Cucsa.189360 (gene) Cucumber (Gy14) v1

NameCucsa.189360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01305 : 77482 .. 77751 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTGTCTTTCAGATAGTATTGTCAATCTTGGCATGCTATCAGTATTTACCCCAAGAAGCTTCCGCAATTCTGACATAAACCACATCCAATTTTCATCACTCTCCACATCGACAACTGCAATGGCCAATGGGAACAATGAGTCATCCGCATCAACAACCGCAGCACAGAGTAAAGCTCCCAGGTATTTTCCTTTAAGATGTGCTCTGTCAAGTTCAAGAAGCGGCCTACAGGCATTTATAAACCCATATATCGAAGCACGATAA

mRNA sequence

ATGCCTCTTTGTCTTTCAGATAGTATTGTCAATCTTGGCATGCTATCAGTATTTACCCCAAGAAGCTTCCGCAATTCTGACATAAACCACATCCAATTTTCATCACTCTCCACATCGACAACTGCAATGGCCAATGGGAACAATGAGTCATCCGCATCAACAACCGCAGCACAGAGTAAAGCTCCCAGGTATTTTCCTTTAAGATGTGCTCTGTCAAGTTCAAGAAGCGGCCTACAGGCATTTATAAACCCATATATCGAAGCACGATAA

Coding sequence (CDS)

ATGCCTCTTTGTCTTTCAGATAGTATTGTCAATCTTGGCATGCTATCAGTATTTACCCCAAGAAGCTTCCGCAATTCTGACATAAACCACATCCAATTTTCATCACTCTCCACATCGACAACTGCAATGGCCAATGGGAACAATGAGTCATCCGCATCAACAACCGCAGCACAGAGTAAAGCTCCCAGGTATTTTCCTTTAAGATGTGCTCTGTCAAGTTCAAGAAGCGGCCTACAGGCATTTATAAACCCATATATCGAAGCACGATAA

Protein sequence

MPLCLSDSIVNLGMLSVFTPRSFRNSDINHIQFSSLSTSTTAMANGNNESSASTTAAQSKAPRYFPLRCALSSSRSGLQAFINPYIEAR*
BLAST of Cucsa.189360 vs. TrEMBL
Match: A0A0S3R025_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G140800 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.0e-09
Identity = 39/84 (46.43%), Postives = 45/84 (53.57%), Query Frame = 1

Query: 1   MPLCLSDSIVNLGMLSVFTPRSFRNSDINHIQFSSLSTSTTAMANGNNESSASTTAAQSK 60
           +P C SD  +N GM SVF  R+  NSD NH+Q SS STSTT  A+GNN  SAS   A+S 
Sbjct: 18  IPCCPSDKNINSGMHSVFPSRTLCNSDRNHVQLSSFSTSTTPKASGNNPPSASKEVAESN 77

Query: 61  APRYFPLRCALSSSRSGLQAFINP 85
             RY        S   G Q    P
Sbjct: 78  VLRYLLFSWIPPSPTIGKQPLKKP 101

BLAST of Cucsa.189360 vs. NCBI nr
Match: gi|965657443|dbj|BAT73862.1| (hypothetical protein VIGAN_01140800 [Vigna angularis var. angularis])

HSP 1 Score: 68.2 bits (165), Expect = 8.6e-09
Identity = 39/84 (46.43%), Postives = 45/84 (53.57%), Query Frame = 1

Query: 1   MPLCLSDSIVNLGMLSVFTPRSFRNSDINHIQFSSLSTSTTAMANGNNESSASTTAAQSK 60
           +P C SD  +N GM SVF  R+  NSD NH+Q SS STSTT  A+GNN  SAS   A+S 
Sbjct: 18  IPCCPSDKNINSGMHSVFPSRTLCNSDRNHVQLSSFSTSTTPKASGNNPPSASKEVAESN 77

Query: 61  APRYFPLRCALSSSRSGLQAFINP 85
             RY        S   G Q    P
Sbjct: 78  VLRYLLFSWIPPSPTIGKQPLKKP 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0S3R025_PHAAN6.0e-0946.43Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G140800 PE=... [more]
Match NameE-valueIdentityDescription
gi|965657443|dbj|BAT73862.1|8.6e-0946.43hypothetical protein VIGAN_01140800 [Vigna angularis var. angularis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.189360.1Cucsa.189360.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None