Cucsa.184900 (gene) Cucumber (Gy14) v1

NameCucsa.184900
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTranscription initiation factor TFIID subunit-like protein
Locationscaffold01274 : 549881 .. 552710 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCACAATTACCTCCAAAGCAAAAATCTATGGTCAAACGCAGCAAAAGCATTACTATCTGAAATCTGGTTTGAATGGAATCAAAGAGTCTTCGACGACAAGCCTTGCGACTGAGCAGCTTGCTTCGATTCATTGCGTCTCCTTGCCTCATCTTGGTGTTCACTCTCAAAGCTTTACACTGCCTACTCAATCCAAGAAATTTGCCTTAATTGGAATGTTTTTCTCTCTTTAGCTTAGATTTGCTCGATAATTTCAAGTTCTAATTCCTTCAGACTTGTGAGGTCCTTAAACTTGTACCCAAATGTATCTCATAATTGATAGTAAACTTTGTATCATTATCATCAAAATATATTAAAAAAATATGTTTCCTTTCCAAAAAAAAAATATTTTACAATTCTCTGTAGACAAATGTTACTAATATTCTGTATTTATTAAATCTACTGGACTAGGCTGGAGGAGCTGCACCTCCAAACCCTAGCCCTAGGATAAGGGGGCGCATTCTGTGGCATTGTGCTTTCCTTGCTTTTCTTTGGGAATGTGGTTAGAGCGAAATTGGAGAGTTTTTAGGTAAATTGAGAGATCTTGAGAAGAGCTTTTGGAATGGACTGTTTTTATACAACTACTTGGGGGTGTGGGCGTTTCTCTTATTTATTTATTATTGTTATATATATATATATGTATGTATTTATTTATTTTGTATTGTTTCATTTGTTCTCAGTAAAAGTAGGTTCTTTTAATTAAAGAGAAGAACTGTTAGGCTAAATCCCCATTTCTTTGAGAGGTTGTGCTGTTGAATCTTTTTCTGTAAGATTGCCCTTTCAATGTTTTGCAGGTTTGGTCATGTTTACAACACTCTTCAGACAAAGCTCACAAAAACTCTTCTCAATGCATTTTTAGACCCCAAACGGGCTTTGACTCAACATTATGGTGCAATTCAAGGATTAGCAGCCTTGGGGATGAATGTGGTATGCTCTTTTCACACGCTTCTTTAATTAGTCTAGGGAGTTGAAGATTGCTAGATTGCAGAAGCAAGCCAAAAGGAAAATGATTGTGCAGAAAGAAAACCAACATGTTTGTGTAAAAATTTATGCAAAGCAATAAAACGGAAGAAAGAAGGGAAGAGATCTTAAGAAAGTTGCCTATGATTTCCATTATAACATACCAAATCAGGTTGAATGTAAGCGATGTGTGAGAATAATGTGCTGATTTATCCGAATTGAATATGCAGGTCAATAAATTTCATCCTTGGTATACAAACGGTGTTCCTTTAAAAATGTTCCTTTTGGCTTTCTACTTGTTTCTCCCATCCAAATGTTTGGTTTTCTAACATTATATCAAGGTTTATATGATCAAATGTTGACATTTCTTTTCATCTCACCCACACCATTTGGCTGCCGCAACTACCTTTAATTTAAACATCTTTTGCTTTTTCGCAACAAAATAGAGCTGTATTTTATAAAGTACTTGGCCTTTATATTATCATCACATTGAAAATAAATGTTCTAAGATAAGAATTATGATGTCCGCTCAACTTCATTTGAAATTTCAATAAAGTATCAAAAGTCAAAAGGCCTTTTGATTTCATAGTTATTTTTTATTTGTCTTGTCATTGGTATATTTTTGTAATCATCGCAGACCTCTCAGTTTGTATAGGATCAATATTTTACAGGTTCACCTCCTTATACTTCCAAATCTTGAGCCATATCTGGGGCTTTTGGAACCTGAAATGCTTCTTGCTAATCAAAAGAATGAGATGAAGCGGCATGAAGCCTGGCGCGTTTATGGAGCCTTGCTGGTGAGTTCTTTCTATTAAGATCTTGTGCAACTTTATTACCAGAGTATTATGTGGAAACTGATGGAATGGGATTTTTGACATGATATGTTTTCCAGCGTGCGGTTGGTCAATGCATTTATGATCATGTCAAGATTTTTCCTCCTTTGCCTAGTATGCCTGCGGGTTCTATCTTGCGGACGAATGCGAGAGTTATCACCACCACATTTCTGAGTAAGATCTTGCAACTTTATTTAAATCAAAGTACAAGATGCAAAAAGACTATCAACTTCTGCTCTGGTTTTCACTAAGCTGAAATTTTTTATTCCTAGGACTTGTAAATTTTTAGCTCTACCTCTGTCTGGGATTTTTAGTTTTGAGTTTTATGCCAATATAGATCCGTCCTCATTAATATGCTGTGAAATATATGATTAGTGAAACGGTGAAAGAATGAAACAGAAATTCTTGCCATTAGGGGAACTAAAATGTAAATACTTGATATATGTCCTAATTGTTGCTTGTGTAGCTGACCAAATTTCCCTAGTAAAAGAGTGATTTTTTGGCAAATCCTTTATATCTTAAATTTTTTGGAACTTTATAGTTCTTGAGTAAGTACACATTATTTAAAGATTTCACATTTACATTGATCTTTTTGTTTTGCATGTGTAATCTTAGACAAACGCAAGGAAAATGCCGACCACTTAGAAGGGCAGCCTCCCCTTAAGAAGATGGTAATGGATAGTCCAATGGGTGTCATGCCAACTAATTCATCTGCATCACACATGGAAGGAGCAGTTAATCCCGCTTCTTCCAGCAATTCCAGTCTGATTTTGCCGACATCTTCTCAACCATTGCAAAACGAAACCATTCCAGGCAGCAATAGTAGGAAAGGCAAGTATGATGATCAAATTCTTAAAAGGTCAGCTGTCTTATCTCAAGTCTGGAAGGAGGATCTTAAATCTGGAAAGTTGTTAACATCCATGTTAGATTTGTTTGGTGAAAGTATGTTATGCTTCATTCCTGCTCCTGAATTGTCCATGTTCTTGTAATAACTATCATC

mRNA sequence

GCCACAATTACCTCCAAAGCAAAAATCtatggtcaaacgcagcaaaagcattactatctgaaatctggtttgaatggaatcaaagagtcttcgacgacaagccttgcgactgagcagcttgcttcgattcattgcgtctccttgcctcatcttggtaaattgagagatcttgagaagagcttttggaatggactgtttttatacaactacttggggATTGCCCTTTCAATGTTTTGCAGGTTTGGTCATGTTTACAACACTCTTCAGACAAAGCTCACAAAAACTCTTCTCAATGCATTTTTAGACCCCAAACGGGCTTTGACTCAACATTATGGTGCAATTCAAGGATTAGCAGCCTTGGGGATGAATGTGGTTCACCTCCTTATACTTCCAAATCTTGAGCCATATCTGGGGCTTTTGGAACCTGAAATGCTTCTTGCTAATCAAAAGAATGAGATGAAGCGGCATGAAGCCTGGCGCGTTTATGGAGCCTTGCTGCGTGCGGTTGGTCAATGCATTTATGATCATGTCAAGATTTTTCCTCCTTTGCCTAGTATGCCTGCGGGTTCTATCTTGCGGACGAATGCGAGAGTTATCACCACCACATTTCTGAACAAACGCAAGGAAAATGCCGACCACTTAGAAGGGCAGCCTCCCCTTAAGAAGATGGTAATGGATAGTCCAATGGGTGTCATGCCAACTAATTCATCTGCATCACACATGGAAGGAGCAGTTAATCCCGCTTCTTCCAGCAATTCCAGTCTGATTTTGCCGACATCTTCTCAACCATTGCAAAACGAAACCATTCCAGGCAGCAATAGTAGGAAAGGCAAGTATGATGATCAAATTCTTAAAAGGTCAGCTGTCTTATCTCAAGTCTGGAAGGAGGATCTTAAATCTGGAAAGTTGTTAACATCCATGTTAGATTTGTTTGGTGAAAGTATGTTATGCTTCATTCCTGCTCCTGAATTGTCCATGTTCTTGTAATAACTATCATC

Coding sequence (CDS)

ATGTTTTGCAGGTTTGGTCATGTTTACAACACTCTTCAGACAAAGCTCACAAAAACTCTTCTCAATGCATTTTTAGACCCCAAACGGGCTTTGACTCAACATTATGGTGCAATTCAAGGATTAGCAGCCTTGGGGATGAATGTGGTTCACCTCCTTATACTTCCAAATCTTGAGCCATATCTGGGGCTTTTGGAACCTGAAATGCTTCTTGCTAATCAAAAGAATGAGATGAAGCGGCATGAAGCCTGGCGCGTTTATGGAGCCTTGCTGCGTGCGGTTGGTCAATGCATTTATGATCATGTCAAGATTTTTCCTCCTTTGCCTAGTATGCCTGCGGGTTCTATCTTGCGGACGAATGCGAGAGTTATCACCACCACATTTCTGAACAAACGCAAGGAAAATGCCGACCACTTAGAAGGGCAGCCTCCCCTTAAGAAGATGGTAATGGATAGTCCAATGGGTGTCATGCCAACTAATTCATCTGCATCACACATGGAAGGAGCAGTTAATCCCGCTTCTTCCAGCAATTCCAGTCTGATTTTGCCGACATCTTCTCAACCATTGCAAAACGAAACCATTCCAGGCAGCAATAGTAGGAAAGGCAAGTATGATGATCAAATTCTTAAAAGGTCAGCTGTCTTATCTCAAGTCTGGAAGGAGGATCTTAAATCTGGAAAGTTGTTAACATCCATGTTAGATTTGTTTGGTGAAAGTATGTTATGCTTCATTCCTGCTCCTGAATTGTCCATGTTCTTGTAA

Protein sequence

MFCRFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGLLEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVITTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPTSSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFIPAPELSMFL*
BLAST of Cucsa.184900 vs. Swiss-Prot
Match: TAF6_ARATH (Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 PE=1 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.9e-58
Identity = 131/259 (50.58%), Postives = 173/259 (66.80%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           R+G VY TLQ++LT+TL+NA LDPK+ALTQHYGAIQGLAALG  VV LLIL NLEPYL L
Sbjct: 295 RYGTVYITLQSRLTRTLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSIL---RTNA 123
           LEPE+    QKN+MK +EAWRVYGALLRA G CI+  +KIFPPLPS P+ S L   +   
Sbjct: 355 LEPELNAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKG 414

Query: 124 RVITTTFLNKRKENADHLEGQPPLKKMV-MDSPMGVMPTNSSASHMEGAVNPASSSN--S 183
           ++I+T   +KRK + D  E Q P K+++ MD P GV   + S S      NP  + N   
Sbjct: 415 KIISTD-PHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQ 474

Query: 184 SLILPTSSQPLQNETIPGSNSRKGKYDD----QILKRSAVLSQVWKEDLKSGKLLTSMLD 243
           + + P+SS+  Q      S SR GK  +    + +   A+L Q+WK+DL SG+LL  + +
Sbjct: 475 NSVQPSSSE--QASDANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHE 534

Query: 244 LFGESMLCFIPAPELSMFL 253
           L+G+ +L FIP+ E+S+FL
Sbjct: 535 LYGDRILPFIPSTEMSVFL 549

BLAST of Cucsa.184900 vs. Swiss-Prot
Match: TAF6B_ARATH (Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6B PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 8.7e-43
Identity = 103/249 (41.37%), Postives = 148/249 (59.44%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVY+ L  ++T++LL+ FLDP +AL QHYGAIQG+ ALG+N+V  L+LPNL PYL L
Sbjct: 305 RFGHVYHNLLPRVTRSLLHTFLDPTKALPQHYGAIQGMVALGLNMVRFLVLPNLGPYLLL 364

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           L PEM L  QK E KRH AW VYGAL+ A G+C+Y+ +K    L S P  S+ +TN + +
Sbjct: 365 LLPEMGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSETLLSPPTSSVWKTNGK-L 424

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           T+   +KRK ++D+L  QPPLKK+ +    G++  +S+   M G               T
Sbjct: 425 TSPRQSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQMRG---------------T 484

Query: 184 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 243
           ++ P Q+ T   +++R       I  +++  +    ++      L  + + FGESML F 
Sbjct: 485 TTVPQQSHT--DADARHHNSPSTIAPKTSAAAGTDVDN-----YLFPLFEYFGESMLMFT 527

Query: 244 PAPELSMFL 253
           P  ELS FL
Sbjct: 545 PTHELSFFL 527

BLAST of Cucsa.184900 vs. Swiss-Prot
Match: TAF6_SCHPO (Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 34/90 (37.78%), Postives = 56/90 (62.22%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFG+VY TL+ ++T+T L AFLD  +  + HYGAI+GL  +G   + +L++PN++ Y  L
Sbjct: 318 RFGNVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVVPNIKVYEVL 377

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAV 94
           +   +    + NE + +EA +   AL  A+
Sbjct: 378 VRKTL---EKGNEEEIYEANKCMDALYDAL 404

BLAST of Cucsa.184900 vs. TrEMBL
Match: A0A0A0KEI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 6.6e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI
Sbjct: 355 LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT
Sbjct: 415 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 474

Query: 184 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 243
           SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI
Sbjct: 475 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 534

Query: 244 PAPELSMFL 253
           PAPELSMFL
Sbjct: 535 PAPELSMFL 543

BLAST of Cucsa.184900 vs. TrEMBL
Match: A0A0A0K1B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 7.1e-116
Identity = 213/250 (85.20%), Postives = 228/250 (91.20%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKR+LTQHYGAI+GLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRSLTQHYGAIRGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLANQKNEMKRHEAW VYGALLRAVGQCIY+ +KIFPPL S PAGS+LRTNAR I
Sbjct: 355 LEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTI 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTF NKRK NAD+LEGQPPLK+M +D PMGVM TNSSASHMEG V PA+S NS+L+ PT
Sbjct: 415 TTTFPNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGTVVPAASGNSNLVSPT 474

Query: 184 SSQPLQNETI-PGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           SS  +QNE I  GS SRKGK+DDQILK+SAVLSQVWKEDL SGKLLTSMLDLFGESM CF
Sbjct: 475 SSGQMQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCF 534

Query: 244 IPAPELSMFL 253
           IPAPELS+FL
Sbjct: 535 IPAPELSLFL 544

BLAST of Cucsa.184900 vs. TrEMBL
Match: M5WT17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003876mg PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.6e-80
Identity = 156/250 (62.40%), Postives = 189/250 (75.60%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQ++LTKTL+NAFLDPKR LTQHYGAIQGLAALG +VV LL+LPNLE YL L
Sbjct: 296 RFGHVYNTLQSRLTKTLVNAFLDPKRTLTQHYGAIQGLAALGPSVVRLLVLPNLETYLRL 355

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPE+LL  QKNEMKRHEAWRVYGALL A GQCIYD +K+FP LPS    S   T+ RVI
Sbjct: 356 LEPELLLDKQKNEMKRHEAWRVYGALLNAAGQCIYDRLKMFPLLPSPAPQSFWSTSQRVI 415

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAV-NPASSSNSSLILP 183
           T    NKRK + +H+E QPPLKK+  D P G++PTNSS SHME  +  PA S +     P
Sbjct: 416 TMP--NKRKGSVEHMEEQPPLKKIATDGPTGLVPTNSSPSHMEVEIATPAPSGDPDAAPP 475

Query: 184 TSSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           +SS  + NE +  S SR+ +   + LK+SA+L+QVWK+DL SG LL S+ +LFGE +L F
Sbjct: 476 SSSGQMPNEGVSNSRSRRDRASGRSLKKSALLTQVWKDDLNSGHLLVSLFELFGEDILSF 535

Query: 244 IPAPELSMFL 253
           +PAPE+ +FL
Sbjct: 536 VPAPEMCLFL 543

BLAST of Cucsa.184900 vs. TrEMBL
Match: D7TE54_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00300 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.0e-78
Identity = 158/250 (63.20%), Postives = 189/250 (75.60%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYN LQT+LTKTLL+AFLDPKR++TQHYGAIQGLAALG N+V LLI+PNLEPYL L
Sbjct: 296 RFGHVYNNLQTRLTKTLLHAFLDPKRSMTQHYGAIQGLAALGPNMVRLLIVPNLEPYLRL 355

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLL  QKNE+KRHEAW VYGALLRA GQ IYD +K+FP LPS PA  + RTN RV+
Sbjct: 356 LEPEMLLEKQKNELKRHEAWCVYGALLRATGQSIYDRLKMFPALPSPPA-RVFRTNGRVV 415

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTN-SSASHMEGAVNPASSSNSSLILP 183
           T+   NKRK N +HLE QP LKK+  D PM V+PTN SS         P  S++  +   
Sbjct: 416 TSP-PNKRKANNEHLEQQPSLKKIATDGPMDVVPTNLSSNMQPPETKGPVPSTDPDMGPS 475

Query: 184 TSSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           +SS+ + +  I  S  RKGK D + LK SAVL+Q W++DLKSG LL S+ +LFGES+L F
Sbjct: 476 SSSRQIPHGNISDSRDRKGKGDSRALKMSAVLTQTWRDDLKSGHLLVSLFELFGESILPF 535

Query: 244 IPAPELSMFL 253
           IPAPE+S+FL
Sbjct: 536 IPAPEMSLFL 543

BLAST of Cucsa.184900 vs. TrEMBL
Match: A0A067EWU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009148mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.4e-76
Identity = 156/252 (61.90%), Postives = 188/252 (74.60%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           R+GHVYNTLQT+LTKTLLNA LDPKRALTQHYGA+QGLAALG NVV LL+LPNL PYL L
Sbjct: 295 RYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLL  QKNE+KRHEAWRVYGALL+A GQCIYD +KIFPPL S+PA S+ +TN   I
Sbjct: 355 LEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNG--I 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHME---GAVNPASSSNSSLI 183
             T  NKRK + D LE QPPLKK+  D P+  + T+S  + ME    A  P  +S++   
Sbjct: 415 VATLSNKRKTSMD-LEEQPPLKKIATDGPVDAVSTSSMPTPMEEDATAATPLDNSDADHP 474

Query: 184 LPTSSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESML 243
            P+S Q +  ++   S S++ K D Q  K SA+L QVWK+DL SGKLL S+ +LFGE +L
Sbjct: 475 SPSSVQ-IPPDSGSESRSKRDKGDSQAQKLSAILPQVWKDDLNSGKLLVSLFELFGEGIL 534

Query: 244 CFIPAPELSMFL 253
            FIPAPE+S+FL
Sbjct: 535 SFIPAPEMSLFL 542

BLAST of Cucsa.184900 vs. TAIR10
Match: AT1G04950.1 (AT1G04950.1 TATA BOX ASSOCIATED FACTOR II 59)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-59
Identity = 131/259 (50.58%), Postives = 173/259 (66.80%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           R+G VY TLQ++LT+TL+NA LDPK+ALTQHYGAIQGLAALG  VV LLIL NLEPYL L
Sbjct: 295 RYGTVYITLQSRLTRTLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSIL---RTNA 123
           LEPE+    QKN+MK +EAWRVYGALLRA G CI+  +KIFPPLPS P+ S L   +   
Sbjct: 355 LEPELNAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPS-PSPSFLHKGKGKG 414

Query: 124 RVITTTFLNKRKENADHLEGQPPLKKMV-MDSPMGVMPTNSSASHMEGAVNPASSSN--S 183
           ++I+T   +KRK + D  E Q P K+++ MD P GV   + S S      NP  + N   
Sbjct: 415 KIISTD-PHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQ 474

Query: 184 SLILPTSSQPLQNETIPGSNSRKGKYDD----QILKRSAVLSQVWKEDLKSGKLLTSMLD 243
           + + P+SS+  Q      S SR GK  +    + +   A+L Q+WK+DL SG+LL  + +
Sbjct: 475 NSVQPSSSE--QASDANESESRNGKVKESGRSRAITMKAILDQIWKDDLDSGRLLVKLHE 534

Query: 244 LFGESMLCFIPAPELSMFL 253
           L+G+ +L FIP+ E+S+FL
Sbjct: 535 LYGDRILPFIPSTEMSVFL 549

BLAST of Cucsa.184900 vs. TAIR10
Match: AT1G54360.2 (AT1G54360.2 TBP-ASSOCIATED FACTOR 6B)

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-44
Identity = 103/249 (41.37%), Postives = 148/249 (59.44%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVY+ L  ++T++LL+ FLDP +AL QHYGAIQG+ ALG+N+V  L+LPNL PYL L
Sbjct: 305 RFGHVYHNLLPRVTRSLLHTFLDPTKALPQHYGAIQGMVALGLNMVRFLVLPNLGPYLLL 364

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           L PEM L  QK E KRH AW VYGAL+ A G+C+Y+ +K    L S P  S+ +TN + +
Sbjct: 365 LLPEMGLEKQKEEAKRHGAWLVYGALMVAAGRCLYERLKTSETLLSPPTSSVWKTNGK-L 424

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           T+   +KRK ++D+L  QPPLKK+ +    G++  +S+   M G               T
Sbjct: 425 TSPRQSKRKASSDNLTHQPPLKKIAVG---GIIQMSSTQMQMRG---------------T 484

Query: 184 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 243
           ++ P Q+ T   +++R       I  +++  +    ++      L  + + FGESML F 
Sbjct: 485 TTVPQQSHT--DADARHHNSPSTIAPKTSAAAGTDVDN-----YLFPLFEYFGESMLMFT 527

Query: 244 PAPELSMFL 253
           P  ELS FL
Sbjct: 545 PTHELSFFL 527

BLAST of Cucsa.184900 vs. NCBI nr
Match: gi|778716397|ref|XP_004140111.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus])

HSP 1 Score: 498.0 bits (1281), Expect = 9.4e-138
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI
Sbjct: 355 LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT
Sbjct: 415 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 474

Query: 184 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 243
           SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI
Sbjct: 475 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 534

Query: 244 PAPELSMFL 253
           PAPELSMFL
Sbjct: 535 PAPELSMFL 543

BLAST of Cucsa.184900 vs. NCBI nr
Match: gi|659097009|ref|XP_008449395.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 474.2 bits (1219), Expect = 1.5e-130
Identity = 238/249 (95.58%), Postives = 240/249 (96.39%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYD VKIFPPLPSMPAGSILRTNARVI
Sbjct: 355 LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDRVKIFPPLPSMPAGSILRTNARVI 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTF NKRK NADH+ GQ PLKKMVMDSPMGVMPTNSSASHMEGAVNPASS NSSL+LPT
Sbjct: 415 TTTFPNKRKANADHIRGQAPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSGNSSLVLPT 474

Query: 184 SSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 243
           SSQPLQNE IPGS SRKGK DDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI
Sbjct: 475 SSQPLQNEIIPGSTSRKGKCDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCFI 534

Query: 244 PAPELSMFL 253
           PAPELSMFL
Sbjct: 535 PAPELSMFL 543

BLAST of Cucsa.184900 vs. NCBI nr
Match: gi|659110962|ref|XP_008455502.1| (PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo])

HSP 1 Score: 433.3 bits (1113), Expect = 2.8e-118
Identity = 216/250 (86.40%), Postives = 233/250 (93.20%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKR+LTQHYGAI+GLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRSLTQHYGAIRGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLA+QKNEMKRHEAWRVYGALLRAVGQCIY+ VKIFPPLPS PAGS+LRTNAR+I
Sbjct: 355 LEPEMLLASQKNEMKRHEAWRVYGALLRAVGQCIYERVKIFPPLPSTPAGSVLRTNARII 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTF NKRK NAD+LEGQPPLK+M++D PMGVM TNSSASHMEG V PA+S NS+++ PT
Sbjct: 415 TTTFPNKRKANADYLEGQPPLKRMLIDGPMGVMLTNSSASHMEGTVVPAASGNSNVVSPT 474

Query: 184 SSQPLQNETI-PGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           SS  +QNETI  GS SRKGK+DDQILKRSAVLSQVWKEDL SGKLLTSMLDLFGESM CF
Sbjct: 475 SSGQMQNETISSGSTSRKGKHDDQILKRSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCF 534

Query: 244 IPAPELSMFL 253
           IPAPELS+FL
Sbjct: 535 IPAPELSLFL 544

BLAST of Cucsa.184900 vs. NCBI nr
Match: gi|778723605|ref|XP_004144526.2| (PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115
Identity = 213/250 (85.20%), Postives = 228/250 (91.20%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQTKLTKTLLNAFLDPKR+LTQHYGAI+GLAALGMNVVHLLILPNLEPYLGL
Sbjct: 295 RFGHVYNTLQTKLTKTLLNAFLDPKRSLTQHYGAIRGLAALGMNVVHLLILPNLEPYLGL 354

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPEMLLANQKNEMKRHEAW VYGALLRAVGQCIY+ +KIFPPL S PAGS+LRTNAR I
Sbjct: 355 LEPEMLLANQKNEMKRHEAWHVYGALLRAVGQCIYERIKIFPPLLSTPAGSVLRTNARTI 414

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAVNPASSSNSSLILPT 183
           TTTF NKRK NAD+LEGQPPLK+M +D PMGVM TNSSASHMEG V PA+S NS+L+ PT
Sbjct: 415 TTTFPNKRKANADYLEGQPPLKRMSIDGPMGVMLTNSSASHMEGTVVPAASGNSNLVSPT 474

Query: 184 SSQPLQNETI-PGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           SS  +QNE I  GS SRKGK+DDQILK+SAVLSQVWKEDL SGKLLTSMLDLFGESM CF
Sbjct: 475 SSGQMQNEAISSGSTSRKGKHDDQILKKSAVLSQVWKEDLNSGKLLTSMLDLFGESMFCF 534

Query: 244 IPAPELSMFL 253
           IPAPELS+FL
Sbjct: 535 IPAPELSLFL 544

BLAST of Cucsa.184900 vs. NCBI nr
Match: gi|595938187|ref|XP_007215640.1| (hypothetical protein PRUPE_ppa003876mg [Prunus persica])

HSP 1 Score: 307.4 bits (786), Expect = 2.4e-80
Identity = 156/250 (62.40%), Postives = 189/250 (75.60%), Query Frame = 1

Query: 4   RFGHVYNTLQTKLTKTLLNAFLDPKRALTQHYGAIQGLAALGMNVVHLLILPNLEPYLGL 63
           RFGHVYNTLQ++LTKTL+NAFLDPKR LTQHYGAIQGLAALG +VV LL+LPNLE YL L
Sbjct: 296 RFGHVYNTLQSRLTKTLVNAFLDPKRTLTQHYGAIQGLAALGPSVVRLLVLPNLETYLRL 355

Query: 64  LEPEMLLANQKNEMKRHEAWRVYGALLRAVGQCIYDHVKIFPPLPSMPAGSILRTNARVI 123
           LEPE+LL  QKNEMKRHEAWRVYGALL A GQCIYD +K+FP LPS    S   T+ RVI
Sbjct: 356 LEPELLLDKQKNEMKRHEAWRVYGALLNAAGQCIYDRLKMFPLLPSPAPQSFWSTSQRVI 415

Query: 124 TTTFLNKRKENADHLEGQPPLKKMVMDSPMGVMPTNSSASHMEGAV-NPASSSNSSLILP 183
           T    NKRK + +H+E QPPLKK+  D P G++PTNSS SHME  +  PA S +     P
Sbjct: 416 TMP--NKRKGSVEHMEEQPPLKKIATDGPTGLVPTNSSPSHMEVEIATPAPSGDPDAAPP 475

Query: 184 TSSQPLQNETIPGSNSRKGKYDDQILKRSAVLSQVWKEDLKSGKLLTSMLDLFGESMLCF 243
           +SS  + NE +  S SR+ +   + LK+SA+L+QVWK+DL SG LL S+ +LFGE +L F
Sbjct: 476 SSSGQMPNEGVSNSRSRRDRASGRSLKKSALLTQVWKDDLNSGHLLVSLFELFGEDILSF 535

Query: 244 IPAPELSMFL 253
           +PAPE+ +FL
Sbjct: 536 VPAPEMCLFL 543

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TAF6_ARATH1.9e-5850.58Transcription initiation factor TFIID subunit 6 OS=Arabidopsis thaliana GN=TAF6 ... [more]
TAF6B_ARATH8.7e-4341.37Transcription initiation factor TFIID subunit 6b OS=Arabidopsis thaliana GN=TAF6... [more]
TAF6_SCHPO1.3e-0937.78Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (st... [more]
Match NameE-valueIdentityDescription
A0A0A0KEI5_CUCSA6.6e-138100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418910 PE=4 SV=1[more]
A0A0A0K1B8_CUCSA7.1e-11685.20Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037630 PE=4 SV=1[more]
M5WT17_PRUPE1.6e-8062.40Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003876mg PE=4 SV=1[more]
D7TE54_VITVI2.0e-7863.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00300 PE=4 SV=... [more]
A0A067EWU3_CITSI1.4e-7661.90Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009148mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G04950.11.1e-5950.58 TATA BOX ASSOCIATED FACTOR II 59[more]
AT1G54360.24.9e-4441.37 TBP-ASSOCIATED FACTOR 6B[more]
Match NameE-valueIdentityDescription
gi|778716397|ref|XP_004140111.2|9.4e-138100.00PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus][more]
gi|659097009|ref|XP_008449395.1|1.5e-13095.58PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
gi|659110962|ref|XP_008455502.1|2.8e-11886.40PREDICTED: transcription initiation factor TFIID subunit 6-like [Cucumis melo][more]
gi|778723605|ref|XP_004144526.2|1.0e-11585.20PREDICTED: transcription initiation factor TFIID subunit 6 [Cucumis sativus][more]
gi|595938187|ref|XP_007215640.1|2.4e-8062.40hypothetical protein PRUPE_ppa003876mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011442TAF6_C
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0051090regulation of sequence-specific DNA binding transcription factor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0051090 regulation of sequence-specific DNA binding transcription factor activity
cellular_component GO:0005634 nucleus
molecular_function GO:0046982 protein heterodimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.184900.1Cucsa.184900.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011442TAF6, C-terminal HEAT repeat domainPFAMPF07571TAF6_Ccoord: 4..57
score: 4.2
NoneNo IPR availablePANTHERPTHR10221TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6coord: 1..252
score: 3.7
NoneNo IPR availablePANTHERPTHR10221:SF11TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6Bcoord: 1..252
score: 3.7