Cucsa.183330 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.183330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold01261 : 147404 .. 147740 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCTTTATATGAACAAGTTATACCTTTTTATTAAACTCATGGATTTGAAAATGGCTGAAGGTGTGCCTTTTGTGGAACATTTGAATGAATTCAATAGGATCATTGAAAAGTTTAGCTTGGTGAAGGTTGAGTTCAACGAAGAAGCGACTTCTATCCTTTTTCTTTCTCCTTTACCTGATAGTTGGGAATCTATGAAAGTAGCGTTAACTTTCTCTTTAGGTACAACAAAATTGAAAATTGAAGATATTATATATAGATGCAACTTTTACAGAAGAGATTTATAGAAGGCACTTTGGTGTGACTTCTACTTCAAATTCAAGCTTCAAGGATAGATGA

mRNA sequence

AAGCTTTATATGAACAAGTTATACCTTTTTATTAAACTCATGGATTTGAAAATGGCTGAAGGTGTGCCTTTTGTGGAACATTTGAATGAATTCAATAGGATCATTGAAAAGTTTAGCTTGGTGAAGGTTGAGTTCAACGAAGAAGCGACTTCTATCCTTTTTCTTTCTCCTTTACCTGATAGTTGGGAATCTATGAAAGTAGCGTTAACTTTCTCTTTAGATGCAACTTTTACAGAAGAGATTTATAGAAGGCACTTTGGTGTGACTTCTACTTCAAATTCAAGCTTCAAGGATAGATGA

Coding sequence (CDS)

AAGCTTTATATGAACAAGTTATACCTTTTTATTAAACTCATGGATTTGAAAATGGCTGAAGGTGTGCCTTTTGTGGAACATTTGAATGAATTCAATAGGATCATTGAAAAGTTTAGCTTGGTGAAGGTTGAGTTCAACGAAGAAGCGACTTCTATCCTTTTTCTTTCTCCTTTACCTGATAGTTGGGAATCTATGAAAGTAGCGTTAACTTTCTCTTTAGATGCAACTTTTACAGAAGAGATTTATAGAAGGCACTTTGGTGTGACTTCTACTTCAAATTCAAGCTTCAAGGATAGATGA

Protein sequence

KLYMNKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWESMKVALTFSLDATFTEEIYRRHFGVTSTSNSSFKDR*
Homology
[Close]
BLAST of Cucsa.183330 vs. TrEMBL
Match: A5AM64_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037436 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 99  NKVHLMKKLFNLKMAENASIAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 158

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++A++ S            D   TEEI RR  G TS S S+
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILTEEIRRRDVGETSGSGSA 200

[Close]
BLAST of Cucsa.183330 vs. TrEMBL
Match: A5AMG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018063 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.4e-12
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 98  NKVHLMKKLFNLKMAENASVTQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 157

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++ ++ S            D    EEIYRR  G TS S S+
Sbjct: 158 MRMTVSNSTGKEKLKYNDIRDLILAEEIYRRDAGETSGSGSA 199

[Close]
BLAST of Cucsa.183330 vs. TrEMBL
Match: A5AYT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025101 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 47  NKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 106

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           MK+A++ S            D    EEI RR  G TS S S+
Sbjct: 107 MKMAVSNSTGKEKLKYNDIRDLILAEEICRRDAGETSGSGSA 148

[Close]
BLAST of Cucsa.183330 vs. TrEMBL
Match: A5CB53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034155 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V++EF++E  +++ L+ LP+SWE+
Sbjct: 99  NKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIEFDDEIHALIVLASLPNSWEA 158

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++A++ S            D    EEI RR  G TS S S+
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILVEEIRRRDAGETSGSGSA 200

[Close]
BLAST of Cucsa.183330 vs. TrEMBL
Match: A5C2X4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037705 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-11
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE V   +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 76  NKVHLMKKLFNLKMAENVSVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 135

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           +++A++ S            D    EEI RR  G TS S+S+
Sbjct: 136 IRMAISNSTGKKKLKYNDIRDLILAEEIRRRDAGETSGSSSA 177

[Close]
BLAST of Cucsa.183330 vs. NCBI nr
Match: gi|147810165|emb|CAN66898.1| (hypothetical protein VITISV_037436 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 5.4e-12
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 99  NKVHLMKKLFNLKMAENASIAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 158

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++A++ S            D   TEEI RR  G TS S S+
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILTEEIRRRDVGETSGSGSA 200

[Close]
BLAST of Cucsa.183330 vs. NCBI nr
Match: gi|147818238|emb|CAN60396.1| (hypothetical protein VITISV_018063 [Vitis vinifera])

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-12
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 98  NKVHLMKKLFNLKMAENASVTQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 157

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++ ++ S            D    EEIYRR  G TS S S+
Sbjct: 158 MRMTVSNSTGKEKLKYNDIRDLILAEEIYRRDAGETSGSGSA 199

[Close]
BLAST of Cucsa.183330 vs. NCBI nr
Match: gi|147844581|emb|CAN78464.1| (hypothetical protein VITISV_025101 [Vitis vinifera])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 47  NKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 106

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           MK+A++ S            D    EEI RR  G TS S S+
Sbjct: 107 MKMAVSNSTGKEKLKYNDIRDLILAEEICRRDAGETSGSGSA 148

[Close]
BLAST of Cucsa.183330 vs. NCBI nr
Match: gi|147825155|emb|CAN75500.1| (hypothetical protein VITISV_034155 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V++EF++E  +++ L+ LP+SWE+
Sbjct: 99  NKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIEFDDEIHALIVLASLPNSWEA 158

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++A++ S            D    EEI RR  G TS S S+
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILVEEIRRRDAGETSGSGSA 200

[Close]
BLAST of Cucsa.183330 vs. NCBI nr
Match: gi|147864012|emb|CAN81130.1| (hypothetical protein VITISV_003944 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-11
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 

Query: 5   NKLYLFIKLMDLKMAEGVPFVEHLNEFNRIIEKFSLVKVEFNEEATSILFLSPLPDSWES 64
           NK++L  KL +LKMAE     +HLNEFN I  + S V+++F++E  +++ L+ LP+SWE+
Sbjct: 99  NKVHLMTKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEA 158

Query: 65  MKVALTFSL-----------DATFTEEIYRRHFGVTSTSNSS 96
           M++A++ S            D    EEI RR  G TS S S+
Sbjct: 159 MRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSA 200

The following BLAST results are available for this feature:
BLAST of Cucsa.183330 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AM64_VITVI3.8e-1241.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037436 PE=4 SV=1[more]
A5AMG2_VITVI6.4e-1240.20Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018063 PE=4 SV=1[more]
A5AYT3_VITVI1.1e-1141.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025101 PE=4 SV=1[more]
A5CB53_VITVI1.4e-1141.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034155 PE=4 SV=1[more]
A5C2X4_VITVI1.4e-1140.20Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037705 PE=4 SV=1[more]
BLAST of Cucsa.183330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147810165|emb|CAN66898.1|5.4e-1241.18hypothetical protein VITISV_037436 [Vitis vinifera][more]
gi|147818238|emb|CAN60396.1|9.2e-1240.20hypothetical protein VITISV_018063 [Vitis vinifera][more]
gi|147844581|emb|CAN78464.1|1.6e-1141.18hypothetical protein VITISV_025101 [Vitis vinifera][more]
gi|147825155|emb|CAN75500.1|2.0e-1141.18hypothetical protein VITISV_034155 [Vitis vinifera][more]
gi|147864012|emb|CAN81130.1|2.0e-1140.20hypothetical protein VITISV_003944 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.183330.1Cucsa.183330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 4..72
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.183330Cucurbita moschata (Rifu)cgycmoB0522
Cucsa.183330Wild cucumber (PI 183967)cgycpiB290
Cucsa.183330Cucumber (Chinese Long) v2cgycuB280
Cucsa.183330Melon (DHL92) v3.5.1cgymeB330
Cucsa.183330Cucurbita pepo (Zucchini)cgycpeB0502
Cucsa.183330Bottle gourd (USVL1VR-Ls)cgylsiB305
Cucsa.183330Melon (DHL92) v3.6.1cgymedB325
Cucsa.183330Cucumber (Chinese Long) v3cgycucB295
Cucsa.183330Watermelon (97103) v2cgywmbB330