Cucsa.183310 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.183310
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	thylakoid lumen 18.3 kDa protein
Location	scaffold01261 : 127441 .. 128074 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAATGACATTGGTTGACTTCACACCGCATCTCGAACCGAGCAAGCAACTGCTCGGGGTGGGGTGTGACATTAATAACTCACCCATTCAAGTTTTAATTTCCTTACAGGTAGAGATCGTGGTTCCAACGCCTAGTTTTAGATCCACCTATGCTGGTAGTTTTTATTTAGATTTTAAGTATGAATCATTTCCTGACATGCACGTAGTTTTTATTTAGATTTTAAGTTAATGATTTTGCGCAAAAAAAAAAAAAATAATAATCAAGTTTCAGACTTTCATATTTTTTAATTCTAATTTTATCCTCTTTTGGTTTTGGAGGGTCTCAGTTTCCAATCCGGCGATCCTCGCGGGAGGTCGAAGCAGAAGACTCTGGTAGCTAAAGAAGGTGGTACAGATCCTTACTAGAACTATTCAATGAAGTTCACAATTGATGAGGTTGTAGGGATTTCTTTGGCACTTAATTTTTTCCCATTGTTGGTTGGTCATAATGCCCTAGCGTCTAGATTTGATGTTCTTAATGATGGGCCACCGAAGGAAACACATGTGGTGGAGAATGTTGAAGTTCTTAGTTGGGTTACGAAGTCGAATTTGAAGAGGTTGTTGACAGATTTGGAGTGGAGCTGGAGTTCTTAG

mRNA sequence

ggggaatgacattggttgacttcacaccgcatctcgaaccgagcaagcaactgctcggggtggggtgtgacaTTAataactcacccattcaagttttaatttccttacaggtagagatcgtggttccaacgcctagttttagatccacctatgctggtagtttttatttagattttaagtatgaatcatttcctgacatgcacAACTATTCAATGAAGTTCACAATTGATGAGGTTGTAGGGATTTCTTTGGCACTTAATTTTTTCCCATTGTTGGTTGGTCATAATGCCCTAGCGTCTAGATTTGATGTTCTTAATGATGGGCCACCGAAGGAAACACATGTGGTGGAGAATGTTGAAGTTCTTAGTTGGGTTACGAAGTCGAATTTGAAGAGGTTGTTGACAGATTTGGAGTGGAGCTGGAGTTCTTAG

Coding sequence (CDS)

GGGGAATGACATTGGTTGACTTCACACCGCATCTCGAACCGAGCAAGCAACTGCTCGGGGTGGGGTGTGACATTAATAACTCACCCATTCAAGTTTTAATTTCCTTACAGGTAGAGATCGTGGTTCCAACGCCTAGTTTTAGATCCACCTATGCTGGTAGTTTTTATTTAGATTTTAAGTATGAATCATTTCCTGACATGCACAACTATTCAATGAAGTTCACAATTGATGAGGTTGTAGGGATTTCTTTGGCACTTAATTTTTTCCCATTGTTGGTTGGTCATAATGCCCTAGCGTCTAGATTTGATGTTCTTAATGATGGGCCACCGAAGGAAACACATGTGGTGGAGAATGTTGAAGTTCTTAGTTGGGTTACGAAGTCGAATTTGAAGAGGTTGTTGACAGATTTGGAGTGGAGCTGGAGTTCTTAG

Protein sequence

GMTLVDFTPHLEPSKQLLGVGCDINNSPIQVLISLQVEIVVPTPSFRSTYAGSFYLDFKYESFPDMHNYSMKFTIDEVVGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLEWSWSS*

Homology

[Close]

BLAST of Cucsa.183310 vs. Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.5e-11
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 48  STYAGSFYLDFKYESFPDMHNYSMKFTID-EVVGISLALNFFPLLVGHNALASRFDVLND 107
           +T++G  +L  ++   P+  N+ +        + +SL L F P+     ALAS F++LND
Sbjct: 37  TTFSGPKHLSTRFTK-PESRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILND 96

Query: 108 GPPKETHVVENVEVLSWVTKSNLKRLLTDLEW 139
           GPPKET+VV++  VLS VTKS+LK+LL+DLE+
Sbjct: 97  GPPKETYVVDDAGVLSRVTKSDLKKLLSDLEY 124

[Close]

BLAST of Cucsa.183310 vs. Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 81  ISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           +SLA++  P      A+AS FDVLN GPP++T+VV++  VLS VTKS++KRL+ DLE
Sbjct: 83  LSLAISMAPAPAP--AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLE 137

[Close]

BLAST of Cucsa.183310 vs. Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-07
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 81  ISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           +SLA++  P      A+AS FDVLN GPP++T+VV++  VLS VTKS++KRL+ DLE
Sbjct: 83  LSLAISMAPAPAP--AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLE 137

[Close]

BLAST of Cucsa.183310 vs. TrEMBL
Match: A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020910 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-16
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           V ISLALNF PLL GHNALAS FDVL+DGPPKETH+V++  VLS VTKS+LKRLLTDLE
Sbjct: 77  VAISLALNFSPLLAGHNALASEFDVLSDGPPKETHLVDDAGVLSRVTKSDLKRLLTDLE 135

[Close]

BLAST of Cucsa.183310 vs. TrEMBL
Match: B9RF18_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430470 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.4e-12
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + +SLALNF PLL G NALAS FDV+N+GPPK+++VV++  VLS VTKS+LK+LL+DLE
Sbjct: 72  LALSLALNFSPLLYGGNALASEFDVINEGPPKDSYVVDDAGVLSKVTKSDLKQLLSDLE 130

[Close]

BLAST of Cucsa.183310 vs. TrEMBL
Match: A0A151U518_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_007074 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + ISLALNF PLL   NALAS FDVLN+GPPK+++VV++  VLS VT+S+LKRLL+DLE
Sbjct: 73  LAISLALNFSPLLFSGNALASEFDVLNEGPPKDSYVVDDAGVLSRVTRSDLKRLLSDLE 131

[Close]

BLAST of Cucsa.183310 vs. TrEMBL
Match: A0A0D2SSZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G294200 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + ISLALNF P+L   NA+AS FDV+N+GPPKE++VV++  VLS VTKS+LKRLL+DLE
Sbjct: 75  LAISLALNFSPVLYTGNAIASEFDVINEGPPKESYVVDDANVLSRVTKSDLKRLLSDLE 133

[Close]

BLAST of Cucsa.183310 vs. TrEMBL
Match: A5ACT0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033901 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.1e-12
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + +SLALNF PLL  ++ALAS FDVLNDGPP+E++VV++  VLS VTKS+LKRLL+DLE
Sbjct: 75  LALSLALNFCPLLPTNSALASEFDVLNDGPPQESYVVDDAGVLSRVTKSDLKRLLSDLE 133

[Close]

BLAST of Cucsa.183310 vs. TAIR10
Match: AT1G54780.1 (AT1G54780.1 thylakoid lumen 18.3 kDa protein)

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1


Query: 48  STYAGSFYLDFKYESFPDMHNYSMKFTID-EVVGISLALNFFPLLVGHNALASRFDVLND 107
           +T++G  +L  ++   P+  N+ +        + +SL L F P+     ALAS F++LND
Sbjct: 37  TTFSGPKHLSTRFTK-PESRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFNILND 96

Query: 108 GPPKETHVVENVEVLSWVTKSNLKRLLTDLEW 139
           GPPKET+VV++  VLS VTKS+LK+LL+DLE+
Sbjct: 97  GPPKETYVVDDAGVLSRVTKSDLKKLLSDLEY 124

[Close]

BLAST of Cucsa.183310 vs. NCBI nr
Match: gi|659070442|ref|XP_008455096.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 3.6e-17
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           V ISLALNF PLL GHNALAS FDVLNDGPPKETHVV++  VLS VTKS+LKRLLTDLE
Sbjct: 76  VAISLALNFSPLLAGHNALASEFDVLNDGPPKETHVVDDAGVLSRVTKSDLKRLLTDLE 134

[Close]

BLAST of Cucsa.183310 vs. NCBI nr
Match: gi|449442857|ref|XP_004139197.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 3.0e-16
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           V ISLALNF PLL GHNALAS FDVL+DGPPKETH+V++  VLS VTKS+LKRLLTDLE
Sbjct: 77  VAISLALNFSPLLAGHNALASEFDVLSDGPPKETHLVDDAGVLSRVTKSDLKRLLTDLE 135

[Close]

BLAST of Cucsa.183310 vs. NCBI nr
Match: gi|255542548|ref|XP_002512337.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Ricinus communis])

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + +SLALNF PLL G NALAS FDV+N+GPPK+++VV++  VLS VTKS+LK+LL+DLE
Sbjct: 72  LALSLALNFSPLLYGGNALASEFDVINEGPPKDSYVVDDAGVLSKVTKSDLKQLLSDLE 130

[Close]

BLAST of Cucsa.183310 vs. NCBI nr
Match: gi|1012363213|gb|KYP74396.1| (hypothetical protein KK1_007074 [Cajanus cajan])

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 79  VGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTKSNLKRLLTDLE 138
           + ISLALNF PLL   NALAS FDVLN+GPPK+++VV++  VLS VT+S+LKRLL+DLE
Sbjct: 73  LAISLALNFSPLLFSGNALASEFDVLNEGPPKDSYVVDDAGVLSRVTRSDLKRLLSDLE 131

[Close]

BLAST of Cucsa.183310 vs. NCBI nr
Match: gi|1012237092|ref|XP_015939940.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Arachis duranensis])

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 1


Query: 7   FTPHLEPSKQLLGVGCDINNSPIQVLISLQVEIVVPTPSFRSTYAGSFYLDFKYESFPDM 66
           F PH      L  +   +++   + L+S    I    P   S       L FK  S    
Sbjct: 5   FPPHTHTLSPLFNIKASLSS---RTLLSPSNSIFCFKPVIPSLKKNQT-LSFKPSSCASW 64

Query: 67  HNYSMKFTIDEVVGISLALNFFPLLVGHNALASRFDVLNDGPPKETHVVENVEVLSWVTK 126
            N++ +      + ISLALNF P+L   NA AS FDVLN+GPPKET+VV++  VLS VT+
Sbjct: 65  LNHAQQGLA--ALAISLALNFNPILYTGNAFASEFDVLNEGPPKETYVVDDAGVLSRVTR 124

Query: 127 SNLKRLLTDLE 138
           S+LKRLL+DLE
Sbjct: 125 SDLKRLLSDLE 129

The following BLAST results are available for this feature:

BLAST of Cucsa.183310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U603_ARATH	6.5e-11	43.48	UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE...	[more]
U603_ORYSI	1.2e-07	54.39	UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_1...	[more]
U603_ORYSJ	1.2e-07	54.39	UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=O...	[more]

BLAST of Cucsa.183310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGA5_CUCSA	2.1e-16	79.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020910 PE=4 SV=1	[more]
B9RF18_RICCO	2.4e-12	66.10	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430470 PE=4 SV=1	[more]
A0A151U518_CAJCA	3.1e-12	67.80	Uncharacterized protein OS=Cajanus cajan GN=KK1_007074 PE=4 SV=1	[more]
A0A0D2SSZ2_GOSRA	4.1e-12	66.10	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G294200 PE=4 SV=1	[more]
A5ACT0_VITVI	4.1e-12	67.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033901 PE=4 SV=1	[more]

BLAST of Cucsa.183310 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54780.1	3.7e-12	43.48	thylakoid lumen 18.3 kDa protein	[more]

BLAST of Cucsa.183310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070442\|ref\|XP_008455096.1\|	3.6e-17	83.05	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo]	[more]
gi\|449442857\|ref\|XP_004139197.1\|	3.0e-16	79.66	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis sativus]	[more]
gi\|255542548\|ref\|XP_002512337.1\|	3.5e-12	66.10	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Ricinus communis]	[more]
gi\|1012363213\|gb\|KYP74396.1\|	4.5e-12	67.80	hypothetical protein KK1_007074 [Cajanus cajan]	[more]
gi\|1012237092\|ref\|XP_015939940.1\|	4.5e-12	41.22	PREDICTED: UPF0603 protein At1g54780, chloroplastic [Arachis duranensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0010114	response to red light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009637	response to blue light
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009657	plastid organization
biological_process	GO:0010206	photosystem II repair
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031977	thylakoid lumen
molecular_function	GO:0003993	acid phosphatase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.183310.1	Cucsa.183310.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.183310	Melon (DHL92) v3.6.1	cgymedB325
Cucsa.183310	Cucumber (Chinese Long) v3	cgycucB295
Cucsa.183310	Watermelon (97103) v2	cgywmbB330
Cucsa.183310	Cucurbita moschata (Rifu)	cgycmoB0522
Cucsa.183310	Wild cucumber (PI 183967)	cgycpiB290
Cucsa.183310	Cucumber (Chinese Long) v2	cgycuB280
Cucsa.183310	Melon (DHL92) v3.5.1	cgymeB330
Cucsa.183310	Cucurbita pepo (Zucchini)	cgycpeB0502
Cucsa.183310	Bottle gourd (USVL1VR-Ls)	cgylsiB305