Cucsa.182040 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.182040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nuclear transcription factor Y subunit B
Location	scaffold01251 : 187198 .. 187469 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAaGGGAAAGATTTCAAAAGAAGCCAAGAAGAGAATGCAAGAATGTGCGAATGAGTTCATTAACTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAA

mRNA sequence

ATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAAGGGAAAGATTTCAAAAGAAGCCAAGAAGAGAATGCAAGAATGTGCGAATGAGTTCATTAACTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAA

Coding sequence (CDS)

ATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAaGGGAAAGATTTCAAAAGAAGCCAAGAAGAGAATGCAAGAATGTGCGAATGAGTTCATTAACTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAA

Protein sequence

MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDIYWAFDSLGLDNYAEASSKYLLX

Homology

[Close]

BLAST of Cucsa.182040 vs. Swiss-Prot
Match: NFYB4_ARATH (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-25
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 6  ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65
          E   LPIANV R+MK+I+P   KISKEAK+ +QECA EFI+FVT EA+++C  ENR+T+N
Sbjct: 4  EDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVN 63

Query: 66 GDDIYWAFDSLGLDNYAEASSKYL 90
          GDDI+WA  +LGLDNYA+A  ++L
Sbjct: 64 GDDIWWALSTLGLDNYADAVGRHL 87

[Close]

BLAST of Cucsa.182040 vs. Swiss-Prot
Match: NFYB5_ARATH (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-22
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIANV RIMK I+P   K+SKEAK+ MQEC +EFI+FVT EA+ +C  E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG D+YA    KYL
Sbjct: 116 CWAMANLGFDDYAAQLKKYL 135

[Close]

BLAST of Cucsa.182040 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-22
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIAN+ RIMKK +P  GKI+K+AK+ +QEC +EFI+F+TSEA+ +CQ E R+T+NGDD+
Sbjct: 43  LPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 102

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG ++Y E    YL
Sbjct: 103 LWAMATLGFEDYIEPLKVYL 122

[Close]

BLAST of Cucsa.182040 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.0e-22
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIAN+ RIMKK +P  GKI+K+AK+ +QEC +EFI+F+TSEA+ +CQ E R+T+NGDD+
Sbjct: 36  LPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 95

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG ++Y E    YL
Sbjct: 96  LWAMATLGFEDYIEPLKVYL 115

[Close]

BLAST of Cucsa.182040 vs. Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIANV RIMKK +P   KISK+AK+ MQEC +EFI+FVT EA+ +CQ E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG ++Y E    YL
Sbjct: 92  LWAMTTLGFEDYVEPLKVYL 111

[Close]

BLAST of Cucsa.182040 vs. TrEMBL
Match: A0A0A0LZ17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569530 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.4e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60
          MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN
Sbjct: 1  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60

Query: 61 RRTLNGDDIYWAFDSLGLDNYAEASSKYLL 91
          RRTLNGDDIYWAFDSLGLDNYAEASSKYLL
Sbjct: 61 RRTLNGDDIYWAFDSLGLDNYAEASSKYLL 90

[Close]

BLAST of Cucsa.182040 vs. TrEMBL
Match: A0A0A0LW12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569510 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 6  ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65
          E L+LPIANVERIMKKI+P+KGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLN
Sbjct: 9  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLN 68

Query: 66 GDDIYWAFDSLGLDNYAEASSKYLL 91
          GDDIYWAF SLGLDNYAEASSK+LL
Sbjct: 69 GDDIYWAFGSLGLDNYAEASSKFLL 93

[Close]

BLAST of Cucsa.182040 vs. TrEMBL
Match: A0A022QI59_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022187mg PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-24
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 8  LQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGD 67
          L LPIANV R+MKKI+P   KIS+EAK+RMQ+CA+EFI FVT EAA RCQ ENR+T+NGD
Sbjct: 7  LSLPIANVGRMMKKILPPSAKISREAKERMQQCASEFICFVTGEAAHRCQKENRKTVNGD 66

Query: 68 DIYWAFDSLGLDNYAEASSKYL 90
          DI WA  SLG DNY+EA  +YL
Sbjct: 67 DICWALSSLGFDNYSEAMLRYL 88

[Close]

BLAST of Cucsa.182040 vs. TrEMBL
Match: M5WPU4_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021948mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-24
Identity = 53/80 (66.25%), Postives = 69/80 (86.25%), Query Frame = 1


Query: 10 LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
          LPIANV RIMK+I+P++ KISKEAK+RMQECA EF++FVT+EA+ +C  ENR+T+NGDDI
Sbjct: 9  LPIANVGRIMKQILPQRAKISKEAKQRMQECATEFLSFVTAEASDKCHKENRKTVNGDDI 68

Query: 70 YWAFDSLGLDNYAEASSKYL 90
           WA  +LG DNYA+A+ +YL
Sbjct: 69 CWALSALGFDNYAQATIRYL 88

[Close]

BLAST of Cucsa.182040 vs. TrEMBL
Match: M1CB00_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024745 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-23
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 10 LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
          +PIANV RIMK+I+P   KISKEAK+ MQECA+EFI+FVT EA+ +CQ ENRRT+NGDDI
Sbjct: 9  VPIANVGRIMKQILPPTAKISKEAKETMQECASEFISFVTGEASDKCQKENRRTVNGDDI 68

Query: 70 YWAFDSLGLDNYAEASSKYL 90
           WA  SLG DNYAE   +YL
Sbjct: 69 CWALSSLGFDNYAEVMLRYL 88

[Close]

BLAST of Cucsa.182040 vs. TAIR10
Match: AT1G09030.1 (AT1G09030.1 nuclear factor Y, subunit B4)

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-26
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 6  ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65
          E   LPIANV R+MK+I+P   KISKEAK+ +QECA EFI+FVT EA+++C  ENR+T+N
Sbjct: 4  EDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVN 63

Query: 66 GDDIYWAFDSLGLDNYAEASSKYL 90
          GDDI+WA  +LGLDNYA+A  ++L
Sbjct: 64 GDDIWWALSTLGLDNYADAVGRHL 87

[Close]

BLAST of Cucsa.182040 vs. TAIR10
Match: AT2G47810.1 (AT2G47810.1 nuclear factor Y, subunit B5)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 49/80 (61.25%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIANV RIMK I+P   K+SKEAK+ MQEC +EFI+FVT EA+ +C  E R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG D+YA    KYL
Sbjct: 116 CWAMANLGFDDYAAQLKKYL 135

[Close]

BLAST of Cucsa.182040 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2)

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-23
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIANV RIMKK +P   KISK+AK+ MQEC +EFI+FVT EA+ +CQ E R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG ++Y E    YL
Sbjct: 92  LWAMTTLGFEDYVEPLKVYL 111

[Close]

BLAST of Cucsa.182040 vs. TAIR10
Match: AT2G13570.1 (AT2G13570.1 nuclear factor Y, subunit B7)

HSP 1 Score: 104.4 bits (259), Expect = 3.8e-23
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIANV RIMKK++P  GKISK+AK+ +QEC +EFI+FVT EA+ +CQ E R+T+NGDDI
Sbjct: 41  LPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDI 100

Query: 70  YWAFDSLGLDNYAEASSKYL 90
            WA  +LG ++Y      YL
Sbjct: 101 IWAITTLGFEDYVAPLKVYL 120

[Close]

BLAST of Cucsa.182040 vs. TAIR10
Match: AT3G53340.1 (AT3G53340.1 nuclear factor Y, subunit B10)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 45/81 (55.56%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 10  LPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDI 69
           LPIAN+ RIMK+ +P  GKI+K+AK+ MQEC +EFI+FVTSEA+ +CQ E R+T+NGDD+
Sbjct: 34  LPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDL 93

Query: 70  YWAFDSLGLDNYAEASSKYLL 91
            WA  +LG ++Y +    YL+
Sbjct: 94  LWAMATLGFEDYIDPLKVYLM 114

[Close]

BLAST of Cucsa.182040 vs. NCBI nr
Match: gi|449435998|ref|XP_004135781.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 4.9e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1


Query: 1  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60
          MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN
Sbjct: 1  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60

Query: 61 RRTLNGDDIYWAFDSLGLDNYAEASSKYLL 91
          RRTLNGDDIYWAFDSLGLDNYAEASSKYLL
Sbjct: 61 RRTLNGDDIYWAFDSLGLDNYAEASSKYLL 90

[Close]

BLAST of Cucsa.182040 vs. NCBI nr
Match: gi|659100539|ref|XP_008451143.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 6.1e-39
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60
          MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFI+FVTSEAAQ+C NEN
Sbjct: 1  MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 61 RRTLNGDDIYWAFDSLGLDNYAEASSKYLL 91
          RRTLNGDDIYWAF SLGLDNYAEASS  LL
Sbjct: 61 RRTLNGDDIYWAFGSLGLDNYAEASSMLLL 90

[Close]

BLAST of Cucsa.182040 vs. NCBI nr
Match: gi|449435996|ref|XP_004135780.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 77/85 (90.59%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 6  ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65
          E L+LPIANVERIMKKI+P+KGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLN
Sbjct: 9  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLN 68

Query: 66 GDDIYWAFDSLGLDNYAEASSKYLL 91
          GDDIYWAF SLGLDNYAEASSK+LL
Sbjct: 69 GDDIYWAFGSLGLDNYAEASSKFLL 93

[Close]

BLAST of Cucsa.182040 vs. NCBI nr
Match: gi|659100537|ref|XP_008451142.1| (PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 70/84 (83.33%), Postives = 75/84 (89.29%), Query Frame = 1


Query: 6  ESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLN 65
          E L+LPIANVERIMKKI+P+KGKISKEAKK MQECANEFI+FVTSEAAQRC  ENRRTLN
Sbjct: 9  EFLELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLN 68

Query: 66 GDDIYWAFDSLGLDNYAEASSKYL 90
          GDDI WAF S GLDNYAE  +KYL
Sbjct: 69 GDDICWAFASSGLDNYAEVFAKYL 92

[Close]

BLAST of Cucsa.182040 vs. NCBI nr
Match: gi|1012236535|ref|XP_015939806.1| (PREDICTED: nuclear transcription factor Y subunit B-4-like [Arachis duranensis])

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 4  NWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRT 63
          N E + LPIANV RIMK++VP  GKISKE K+ MQEC  EFI+FVT EA+ +C  ENR+T
Sbjct: 10 NNEDMSLPIANVGRIMKQVVPGSGKISKEGKQLMQECVTEFISFVTGEASAKCHKENRKT 69

Query: 64 LNGDDIYWAFDSLGLDNYAEASSKYL 90
          +NGDDI WA  SLG DNYAEA S+YL
Sbjct: 70 VNGDDICWALSSLGFDNYAEAISRYL 95

The following BLAST results are available for this feature:

BLAST of Cucsa.182040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYB4_ARATH	5.0e-25	61.90	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana GN=NFYB4 PE=1...	[more]
NFYB5_ARATH	2.3e-22	61.25	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana GN=NFYB5 PE=2...	[more]
NFYB3_ORYSJ	4.0e-22	56.25	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NF...	[more]
NFYB_MAIZE	4.0e-22	56.25	Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1	[more]
NFYB2_ARATH	5.2e-22	58.75	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2...	[more]

BLAST of Cucsa.182040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ17_CUCSA	3.4e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569530 PE=4 SV=1	[more]
A0A0A0LW12_CUCSA	1.2e-36	90.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569510 PE=4 SV=1	[more]
A0A022QI59_ERYGU	1.0e-24	69.51	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a022187mg PE=4 SV=1	[more]
M5WPU4_PRUPE	3.0e-24	66.25	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021948mg PE=4 S...	[more]
M1CB00_SOLTU	1.1e-23	68.75	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024745 PE=4 SV=1	[more]

BLAST of Cucsa.182040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09030.1	2.8e-26	61.90	nuclear factor Y, subunit B4	[more]
AT2G47810.1	1.3e-23	61.25	nuclear factor Y, subunit B5	[more]
AT5G47640.1	2.9e-23	58.75	nuclear factor Y, subunit B2	[more]
AT2G13570.1	3.8e-23	58.75	nuclear factor Y, subunit B7	[more]
AT3G53340.1	1.1e-22	55.56	nuclear factor Y, subunit B10	[more]

BLAST of Cucsa.182040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435998\|ref\|XP_004135781.1\|	4.9e-44	100.00	PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus]	[more]
gi\|659100539\|ref\|XP_008451143.1\|	6.1e-39	90.00	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
gi\|449435996\|ref\|XP_004135780.1\|	1.7e-36	90.59	PREDICTED: nuclear transcription factor Y subunit B-4-like [Cucumis sativus]	[more]
gi\|659100537\|ref\|XP_008451142.1\|	2.8e-31	83.33	PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo]	[more]
gi\|1012236535\|ref\|XP_015939806.1\|	1.1e-24	66.28	PREDICTED: nuclear transcription factor Y subunit B-4-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003958	CBFA_NFYB_domain
IPR009072	Histone-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.182040.1	Cucsa.182040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 9..72 score: 1.3
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 4..89 score: 1.1
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 7..86 score: 1.71
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 75..91 score: 1.7E-10coord: 37..55 score: 1.7E-10coord: 56..74 score: 1.7
None	No IPR available	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 10..89 score: 3.8
None	No IPR available	PANTHER	PTHR11064:SF44	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 10..89 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.182040	Cucurbita moschata (Rifu)	cgycmoB0518
Cucsa.182040	Cucurbita moschata (Rifu)	cgycmoB0519
Cucsa.182040	Cucurbita moschata (Rifu)	cgycmoB0521
Cucsa.182040	Wild cucumber (PI 183967)	cgycpiB288
Cucsa.182040	Cucumber (Chinese Long) v2	cgycuB278
Cucsa.182040	Melon (DHL92) v3.5.1	cgymeB328
Cucsa.182040	Watermelon (Charleston Gray)	cgywcgB324
Cucsa.182040	Watermelon (97103) v1	cgywmB348
Cucsa.182040	Cucurbita pepo (Zucchini)	cgycpeB0499
Cucsa.182040	Cucurbita pepo (Zucchini)	cgycpeB0500
Cucsa.182040	Bottle gourd (USVL1VR-Ls)	cgylsiB304
Cucsa.182040	Melon (DHL92) v3.6.1	cgymedB323
Cucsa.182040	Silver-seed gourd	carcgyB0290
Cucsa.182040	Cucumber (Chinese Long) v3	cgycucB293
Cucsa.182040	Watermelon (97103) v2	cgywmbB328
Cucsa.182040	Wax gourd	cgywgoB372
Cucsa.182040	Wax gourd	cgywgoB373
Cucsa.182040	Cucurbita maxima (Rimu)	cgycmaB0517
Cucsa.182040	Cucurbita maxima (Rimu)	cgycmaB0519
Cucsa.182040	Cucurbita maxima (Rimu)	cgycmaB0520