Cucsa.178720 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Ycf68
Location	scaffold01227 : 1076029 .. 1076213 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTATGGCGTACTTCTCCTGTTTGAATCGGGGTTTGATACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTAAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTAGGGGGGACCACCTTGGCTCCTTTCTTCTCGAGAATCCATACATCCCTTATTAG

mRNA sequence

AGTATGGCGTACTTCTCCTGTTTGAATCGGGGTTTGATACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTAAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTAGGGGGGACCACCTTGGCTCCTTTCTTCTCGAGAATCCATACATCCCTTATTAG

Coding sequence (CDS)

AGTATGGCGTACTTCTCCTGTTTGAATCGGGGTTTGATACCAAACTTCTCCTCAGGAGGATAGATGGGGCGATTAAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGAGCGGTCTAGGGGGGACCACCTTGGCTCCTTTCTTCTCGAGAATCCATACATCCCTTATTAG

Protein sequence

YGVLLLFESGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY*

Homology

[Close]

BLAST of Cucsa.178720 vs. Swiss-Prot
Match: YCF68_EUCGG (Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-16
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 9  SGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          +GF+TK LLRRIDGAI+VRSNVDPTFYSLVGS RS GD  GS LLENPYIPY
Sbjct: 43 TGFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPY 94

[Close]

BLAST of Cucsa.178720 vs. Swiss-Prot
Match: YCF68_PINKO (Uncharacterized protein ycf68 OS=Pinus koraiensis GN=ycf68 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.6e-13
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 6  LFESGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGD---HLGSFLLENPYIPY 61
          LFE GF T+L+LRRIDGAI+VRSN DPTFYS V      G    H GS LLENPYIPY
Sbjct: 7  LFEPGFGTELILRRIDGAIQVRSNADPTFYSFVDLGGPGGPVVIHHGSSLLENPYIPY 64

[Close]

BLAST of Cucsa.178720 vs. Swiss-Prot
Match: YCF68_PINTH (Uncharacterized protein ycf68 OS=Pinus thunbergii GN=ycf68 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-12
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 6  LFESGFDTKLLLRRIDGAIKVRSNVDPTFYSLV---GSERSRGDHLGSFLLENPYIPY 61
          L E GF T+L+LRRIDGAI+VRSN DPTFYS V   G       HLGS LLENPYIPY
Sbjct: 7  LCEPGFGTELILRRIDGAIQVRSNTDPTFYSFVDLGGPGVPVVIHLGSSLLENPYIPY 64

[Close]

BLAST of Cucsa.178720 vs. Swiss-Prot
Match: YCF68_MAIZE (Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1


Query: 14 KLLLRRIDGAIKVRSNVDPTFYSLVGSERSRG 46
          KLLLRRIDGAI+VRS+VD TFYSLVGS RS G
Sbjct: 15 KLLLRRIDGAIQVRSHVDRTFYSLVGSGRSGG 46

[Close]

BLAST of Cucsa.178720 vs. Swiss-Prot
Match: YCF68_SACHY (Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 1


Query: 14 KLLLRRIDGAIKVRSNVDPTFYSLVGSERSRG 46
          KLLLRRIDGAI+VRS+VD TFYSLVGS RS G
Sbjct: 15 KLLLRRIDGAIQVRSHVDRTFYSLVGSGRSGG 46

[Close]

BLAST of Cucsa.178720 vs. TrEMBL
Match: A0A022Q388_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a019258mg PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-17
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  YGVLLLFESGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 60
          +GVLLLFE GF+TK +L RIDGAI+VRSNVDPT  SLVGS RS GDH GS LLENPYIPY
Sbjct: 12 HGVLLLFEPGFETKPILGRIDGAIRVRSNVDPTLDSLVGSGRSGGDHYGSSLLENPYIPY 71

[Close]

BLAST of Cucsa.178720 vs. TrEMBL
Match: A0A109R0E0_9ROSI (Ycf68 OS=Boswellia sacra GN=ycf68 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-16
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 10 GFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          GF+TKLLLRRIDGAI+VRSNVDPTFYSLVGS RS GDH GS LL+NPYIPY
Sbjct: 10 GFETKLLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLDNPYIPY 60

[Close]

BLAST of Cucsa.178720 vs. TrEMBL
Match: A0A088DAC6_CITAU (Hypothetical chloroplast RF68 OS=Citrus aurantiifolia GN=ycf68 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 10 GFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          GF+ KLLLRRIDGAI+VRSNVDPTFYSLVGS RS GDH GS LL+NPYIPY
Sbjct: 10 GFENKLLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLDNPYIPY 60

[Close]

BLAST of Cucsa.178720 vs. TrEMBL
Match: T1QNJ8_EUCSL (Uncharacterized protein OS=Eucalyptus salmonophloia GN=ORF113 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-14
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 9  SGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          +GF+TK LLRRIDGAI+VRSNVDPTFYSLVGS RS GD  GS LLENPYIPY
Sbjct: 43 TGFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPY 94

[Close]

BLAST of Cucsa.178720 vs. TrEMBL
Match: T1QQF2_9MYRT (Uncharacterized protein OS=Stockwellia quadrifida GN=ORF113 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-14
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 9  SGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          +GF+TK LLRRIDGAI+VRSNVDPTFYSLVGS RS GD  GS LLENPYIPY
Sbjct: 43 TGFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPY 94

[Close]

BLAST of Cucsa.178720 vs. NCBI nr
Match: gi|604301234|gb|EYU20945.1| (hypothetical protein MIMGU_mgv1a019258mg, partial [Erythranthe guttata])

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-17
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  YGVLLLFESGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 60
          +GVLLLFE GF+TK +L RIDGAI+VRSNVDPT  SLVGS RS GDH GS LLENPYIPY
Sbjct: 12 HGVLLLFEPGFETKPILGRIDGAIRVRSNVDPTLDSLVGSGRSGGDHYGSSLLENPYIPY 71

[Close]

BLAST of Cucsa.178720 vs. NCBI nr
Match: gi|1002164102|ref|YP_009234263.1| (ycf68 (chloroplast) [Boswellia sacra])

HSP 1 Score: 91.3 bits (225), Expect = 6.4e-16
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 10 GFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          GF+TKLLLRRIDGAI+VRSNVDPTFYSLVGS RS GDH GS LL+NPYIPY
Sbjct: 10 GFETKLLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLDNPYIPY 60

[Close]

BLAST of Cucsa.178720 vs. NCBI nr
Match: gi|697964811|ref|YP_009059396.1| (hypothetical chloroplast RF68 (chloroplast) [Citrus aurantiifolia])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-15
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 10 GFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          GF+ KLLLRRIDGAI+VRSNVDPTFYSLVGS RS GDH GS LL+NPYIPY
Sbjct: 10 GFENKLLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDHHGSSLLDNPYIPY 60

[Close]

BLAST of Cucsa.178720 vs. NCBI nr
Match: gi|545718613|ref|YP_008577454.1| (hypothetical protein EGUI_CP_p070 (chloroplast) [Eucalyptus guilfoylei])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 9  SGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          +GF+TK LLRRIDGAI+VRSNVDPTFYSLVGS RS GD  GS LLENPYIPY
Sbjct: 43 TGFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPY 94

[Close]

BLAST of Cucsa.178720 vs. NCBI nr
Match: gi|108802688|ref|YP_636345.1| (hypothetical protein EuglglCp070 (chloroplast) [Eucalyptus globulus subsp. globulus])

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 9  SGFDTKLLLRRIDGAIKVRSNVDPTFYSLVGSERSRGDHLGSFLLENPYIPY 61
          +GF+TK LLRRIDGAI+VRSNVDPTFYSLVGS RS GD  GS LLENPYIPY
Sbjct: 43 TGFETKPLLRRIDGAIQVRSNVDPTFYSLVGSGRSGGDPHGSSLLENPYIPY 94

The following BLAST results are available for this feature:

BLAST of Cucsa.178720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCF68_EUCGG	1.3e-16	82.69	Uncharacterized protein ycf68 OS=Eucalyptus globulus subsp. globulus GN=ycf68-1 ...	[more]
YCF68_PINKO	8.6e-13	67.24	Uncharacterized protein ycf68 OS=Pinus koraiensis GN=ycf68 PE=3 SV=1	[more]
YCF68_PINTH	4.3e-12	67.24	Uncharacterized protein ycf68 OS=Pinus thunbergii GN=ycf68 PE=3 SV=1	[more]
YCF68_MAIZE	1.6e-06	84.38	Uncharacterized protein ycf68 OS=Zea mays GN=ycf68 PE=3 SV=2	[more]
YCF68_SACHY	1.6e-06	84.38	Uncharacterized protein ycf68 OS=Saccharum hybrid GN=ycf68-1 PE=3 SV=1	[more]

BLAST of Cucsa.178720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A022Q388_ERYGU	5.3e-17	78.33	Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a019258mg...	[more]
A0A109R0E0_9ROSI	4.5e-16	86.27	Ycf68 OS=Boswellia sacra GN=ycf68 PE=4 SV=1	[more]
A0A088DAC6_CITAU	1.7e-15	84.31	Hypothetical chloroplast RF68 OS=Citrus aurantiifolia GN=ycf68 PE=4 SV=1	[more]
T1QNJ8_EUCSL	1.4e-14	82.69	Uncharacterized protein OS=Eucalyptus salmonophloia GN=ORF113 PE=4 SV=1	[more]
T1QQF2_9MYRT	1.4e-14	82.69	Uncharacterized protein OS=Stockwellia quadrifida GN=ORF113 PE=4 SV=1	[more]

BLAST of Cucsa.178720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|604301234\|gb\|EYU20945.1\|	7.6e-17	78.33	hypothetical protein MIMGU_mgv1a019258mg, partial [Erythranthe guttata]	[more]
gi\|1002164102\|ref\|YP_009234263.1\|	6.4e-16	86.27	ycf68 (chloroplast) [Boswellia sacra]	[more]
gi\|697964811\|ref\|YP_009059396.1\|	2.4e-15	84.31	hypothetical chloroplast RF68 (chloroplast) [Citrus aurantiifolia]	[more]
gi\|545718613\|ref\|YP_008577454.1\|	2.1e-14	82.69	hypothetical protein EGUI_CP_p070 (chloroplast) [Eucalyptus guilfoylei]	[more]
gi\|108802688\|ref\|YP_636345.1\|	2.1e-14	82.69	hypothetical protein EuglglCp070 (chloroplast) [Eucalyptus globulus subsp. globu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022546	Uncharacterised_Ycf68

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178720.1	Cucsa.178720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022546	Uncharacterised protein family Ycf68	PFAM	PF10839	DUF2647	coord: 13..46 score: 6.9
None	No IPR available	PRODOM	PD169947		coord: 22..60 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178720	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178720	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178720	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178720	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178720	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178720	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178720	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178720	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178720	Watermelon (97103) v1	cgywmB341
Cucsa.178720	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178720	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178720	Bottle gourd (USVL1VR-Ls)	cgylsiB300
Cucsa.178720	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178720	Silver-seed gourd	carcgyB0005
Cucsa.178720	Silver-seed gourd	carcgyB0204
Cucsa.178720	Cucumber (Chinese Long) v3	cgycucB287
Cucsa.178720	Watermelon (97103) v2	cgywmbB323
Cucsa.178720	Wax gourd	cgywgoB366