Cucsa.178230 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrotransposon protein
Location	scaffold01227 : 281366 .. 281939 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACTTCGTCTTCGTATTGGTTGGTTGGGAAGGATCCGCAACAGATTCATGCATTCTTCGAGATGCTATTGCACGATCAAATGGGCTGCATGTTCCTCAAGGTAATCAAATGTTTTATGCCTCGAACATATACTACCTGCAACGCCAATCAAATTAGTTAGATCTGACGCATTCGTAACAAGTTATTACTATCTATGCGACGCGGGATATCCCAATGCAGAGGAATTTCTAGCTCCCTATAAAGGACAAAGATACCACTTGCAAGAGTGGCTAGGAGCGGGAAATGCCCGTGCCACCGCAAAAGAGTACTTCAACATGAAACATTTTGCCGCTAGAAATGTTATTGAACGAGCGTTCGGTTTGTTGAAGGGTCGATGGGCAATCCTTTGCGGAAAGTCGTACTATCCCGTGAAAATTCAATGTCGAACAATTCTAGCGTGTTGCCTACTACACAATCTCATCAACCGCGAGATGACGAATGTCGATTTTATTGACAACGTTGACGAGGGAGACTCCACCTACGTGACGATTGGAGGTGATGACATTCAATTCGTTGAGAACTCAAACGAATAG

mRNA sequence

gcgacttcgtcttcgtattggttggttgggaaggatccgcaacagattcatgcattcttcgagatgctattgcacgatcaaatgggctgcatgttcctcaagttagatctgacgcattcgtaacaagttattactatctatgcgacgcgggatatcccaatgcagaggaatttctagctccctataaaggacaaagataccacttgcaagagtggctaggagcgggaaatgcccgtgccaccgcaaaagagtacttcaacatgaaacattttgccgctagaaatgttattgaacgagcgttcggtttgttgaagggtcgatgggcaatcctttgcggaaagtcgtactatcccgtgaaaattcaatgtcgaacaattctagcgtgttgcctactacacaatctcatcaaccgcgagatgacgaatgtcgattttattgacaacgttgacgagggagactccacctacgtgacgattggaggtgatgacattcaattcgttgagaactcaaacgaatag

Coding sequence (CDS)

GCGACTTCGTCTTCGTATTGGTTGGTTGGGAAGGATCCGCAACAGATTCATGCATTCTTCGAGATGCTATTGCACGATCAAATGGGCTGCATGTTCCTCAAGTTAGATCTGACGCATTCGTAACAAGTTATTACTATCTATGCGACGCGGGATATCCCAATGCAGAGGAATTTCTAGCTCCCTATAAAGGACAAAGATACCACTTGCAAGAGTGGCTAGGAGCGGGAAATGCCCGTGCCACCGCAAAAGAGTACTTCAACATGAAACATTTTGCCGCTAGAAATGTTATTGAACGAGCGTTCGGTTTGTTGAAGGGTCGATGGGCAATCCTTTGCGGAAAGTCGTACTATCCCGTGAAAATTCAATGTCGAACAATTCTAGCGTGTTGCCTACTACACAATCTCATCAACCGCGAGATGACGAATGTCGATTTTATTGACAACGTTGACGAGGGAGACTCCACCTACGTGACGATTGGAGGTGATGACATTCAATTCGTTGAGAACTCAAACGAATAG

Protein sequence

DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPYKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQCRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE*

Homology

[Close]

BLAST of Cucsa.178230 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.6e-65
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFV+VL GWEGSA DS ILRDA++R N L VP+         YYYL D GYPNAE FLAP
Sbjct: 181 DFVYVLAGWEGSAADSRILRDALSRPNRLKVPK--------GYYYLVDVGYPNAEGFLAP 240

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           Y+GQRYHLQEW G  NA +T+KE+FNMKH++ARNVIERAFG+LKGRWAIL GKSYYPV++
Sbjct: 241 YRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEV 300

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           QCRTILACCLLHNLINREMTN D  DN+DE DST+ T   DDI ++E SNE
Sbjct: 301 QCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNE 343

[Close]

BLAST of Cucsa.178230 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-63
Identity = 121/172 (70.35%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFV+VL GWEGSA DS ILRDAI++ NGL VP+         YYYLCDAGYPNAE FLAP
Sbjct: 153 DFVYVLAGWEGSAADSRILRDAISQENGLQVPK--------GYYYLCDAGYPNAEGFLAP 212

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           YKGQRYHLQEW GA NA   AKEYFNMKH +ARNVIERAFG+LKGRW IL GKSYYP+++
Sbjct: 213 YKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYPLQV 272

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTY-VTIGGDDIQFVENSNE 172
           QCRTILAC LLHNLINREMT  + +++ DEGDSTY  T   +DIQ++E +NE
Sbjct: 273 QCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNE 316

[Close]

BLAST of Cucsa.178230 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 84/138 (60.87%), Postives = 100/138 (72.46%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           F++VL GWEGS +DS +LRDA++R NGL VP          YYYL D GY N + FLAPY
Sbjct: 213 FIYVLPGWEGSTSDSRVLRDAVSRRNGLTVPH--------GYYYLVDVGYTNGKGFLAPY 272

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
           +GQRYHL +W   G+   T +E+FNMKH AARNVIER FGLLK RWAIL    +YP+K Q
Sbjct: 273 RGQRYHLNDWR-EGHMPTTHEEFFNMKHSAARNVIERCFGLLKLRWAILRSPCFYPIKTQ 332

Query: 122 CRTILACCLLHNLINREM 140
           C+ ILACCL+HNLI REM
Sbjct: 333 CKIILACCLIHNLIKREM 341

[Close]

BLAST of Cucsa.178230 vs. TrEMBL
Match: M5X5X1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021413mg PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.5e-40
Identity = 90/162 (55.56%), Postives = 104/162 (64.20%), Query Frame = 1


Query: 10  EGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPYKGQRYHLQ 69
           EGSA++S +LRDAI R NGL VP        T YYYL D GY N E FLAPY+G RYHL 
Sbjct: 190 EGSASESRVLRDAITRPNGLRVP--------TGYYYLVDGGYTNGEGFLAPYRGTRYHLS 249

Query: 70  EWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQCRTILACC 129
           EW   GN     +EYFNMKH  ARNVIER FGLLK RW IL   S+YP+K QCR I ACC
Sbjct: 250 EWR-EGNTLVNHQEYFNMKHAKARNVIERCFGLLKARWGILRSPSFYPIKTQCRIITACC 309

Query: 130 LLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           LLHNLI REM+       ++E + T   I GD +  +  S+E
Sbjct: 310 LLHNLIRREMSRDPLEHEINEIEETENVIEGDMVGTIGASDE 342

[Close]

BLAST of Cucsa.178230 vs. TrEMBL
Match: A0A061EE93_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017356 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.6e-39
Identity = 91/161 (56.52%), Postives = 107/161 (66.46%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           FVFVL GWEGS  D  +LRDA+ R NGL VP           YYL DAGY N E FLAP+
Sbjct: 106 FVFVLPGWEGSVADGRVLRDALRRRNGLKVPN--------GCYYLVDAGYTNCEGFLAPF 165

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
           +GQRYHL EW   G+  ++ KE+FNMKH AARNVIER FGLLK RW IL   S+YP++I 
Sbjct: 166 RGQRYHLNEWR-QGHEPSSPKEFFNMKHAAARNVIERCFGLLKMRWGILRSPSFYPIRIH 225

Query: 122 CRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDD 163
            R I+ACCLLHN I REM + D I+ VD G+     I  D+
Sbjct: 226 NRIIIACCLLHNFIRREM-SFDPIE-VDLGEFVETNIAVDE 255

[Close]

BLAST of Cucsa.178230 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 63/154 (40.91%), Postives = 84/154 (54.55%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           F++VL GWEGSA DS +L DA+ +                  +YL D G+ N   FLAP+
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRK------------------FYLVDCGFANRLNFLAPF 84

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
           +G RYHLQE+ G      T  E FN++H + RNVIER FG+ K R+AI      +  K Q
Sbjct: 85  RGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIFKSRFAIFKSAPPFSYKKQ 144

Query: 122 CRTILACCLLHNLINREMTN--VDFIDNV-DEGD 153
              +L C  LHN + +E  +   DF D V +EGD
Sbjct: 145 AGLVLTCAALHNFLRKECRSDEADFPDEVGNEGD 160

[Close]

BLAST of Cucsa.178230 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-21
Identity = 55/137 (40.15%), Postives = 72/137 (52.55%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           F +VL GWEGSA+D  +L  A+ R N L VPQ +        YY+ D  YPN   F+APY
Sbjct: 185 FNYVLAGWEGSASDQQVLNAALTRRNKLQVPQGK--------YYIVDNKYPNLPGFIAPY 244

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
            G          + N+R  AKE FN +H      I R FG LK R+ IL     YP++ Q
Sbjct: 245 HGV---------STNSREEAKEMFNERHKLLHRAIHRTFGALKERFPILLSAPPYPLQTQ 304

Query: 122 CRTILACCLLHNLINRE 139
            + ++A C LHN +  E
Sbjct: 305 VKLVIAACALHNYVRLE 304

[Close]

BLAST of Cucsa.178230 vs. TAIR10
Match: AT4G10890.1 (AT4G10890.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 28/67 (41.79%), Postives = 40/67 (59.70%), Query Frame = 1


Query: 44  YYLCDAGYPNAEEFLAPYKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLL 103
           YYL ++ YP    +L P++   YHL ++ G G    T +E FN KH   R+VI+R FG+ 
Sbjct: 95  YYLVNSVYPTTTGYLGPHRRILYHLGQF-GRGGPPVTVQELFNRKHLDLRSVIDRTFGVW 154

Query: 104 KGRWAIL 111
           K +W IL
Sbjct: 155 KAKWRIL 160

[Close]

BLAST of Cucsa.178230 vs. TAIR10
Match: AT5G12010.1 (AT5G12010.1 unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 39/135 (28.89%), Postives = 58/135 (42.96%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           F  + +GW GS  D  +L  ++         +  +   +   +     G+P  +  L PY
Sbjct: 334 FTDLCIGWPGSMPDDKVLEKSLLYQ------RANNGGLLKGMWVAGGPGHPLLDWVLVPY 393

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
             Q      W          +  FN K    + V + AFG LKGRWA  C +    VK+Q
Sbjct: 394 TQQNL---TW---------TQHAFNEKMSEVQGVAKEAFGRLKGRWA--CLQKRTEVKLQ 448

Query: 122 -CRTIL-ACCLLHNL 135
              T+L ACC+LHN+
Sbjct: 454 DLPTVLGACCVLHNI 448

[Close]

BLAST of Cucsa.178230 vs. TAIR10
Match: AT2G13770.1 (AT2G13770.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-06
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 1


Query: 44  YYLCDAGYPNAEEFLAPYKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLL 103
           YYL D  YP     +     Q  H        + R   K+ F MK  A R  +ERAFG+L
Sbjct: 225 YYLADGIYPKWSTLV-----QTIH--------DPRGPKKKLFAMKQEACRKDVERAFGVL 284

Query: 104 KGRWAILCGKSYYPVKIQCRTIL-ACCLLHNLINREMTNVD--FIDNVDEGDSTYVTIGG 163
           + R+AI+ G S    K     I+ +C ++HN+I  +  ++D    + V+         G 
Sbjct: 285 QLRFAIVAGPSRLWNKTVLHDIMTSCIIMHNMIIEDERDIDAPIEERVEVPIEEVEMTGD 338

Query: 164 DDIQFVE 168
           DD +F E
Sbjct: 345 DDTRFQE 338

[Close]

BLAST of Cucsa.178230 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 255.0 bits (650), Expect = 9.4e-65
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFV+VL GWEGSA DS ILRDA++R N L VP+         YYYL D GYPNAE FLAP
Sbjct: 181 DFVYVLAGWEGSAADSRILRDALSRPNRLKVPK--------GYYYLVDVGYPNAEGFLAP 240

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           Y+GQRYHLQEW G  NA +T+KE+FNMKH++ARNVIERAFG+LKGRWAIL GKSYYPV++
Sbjct: 241 YRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGVLKGRWAILRGKSYYPVEV 300

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           QCRTILACCLLHNLINREMTN D  DN+DE DST+ T   DDI ++E SNE
Sbjct: 301 QCRTILACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNE 343

[Close]

BLAST of Cucsa.178230 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 250.8 bits (639), Expect = 1.8e-63
Identity = 121/171 (70.76%), Postives = 137/171 (80.12%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFV+VLVGWEGSA DS ILRDA++R N L VP+         YYYL D GYPNAE FLAP
Sbjct: 121 DFVYVLVGWEGSAADSRILRDALSRPNELKVPK--------GYYYLVDVGYPNAEGFLAP 180

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           Y+GQRYHLQEW G  NA +T+KE+FNMKH +ARNVIERAFG+LKGRWAIL GKSYY V++
Sbjct: 181 YRGQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILWGKSYYLVEV 240

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           QCRTIL CCLLHNLINREMTN D  DN+DE DST+ TI  DDI ++E SNE
Sbjct: 241 QCRTILTCCLLHNLINREMTNFDIQDNIDEVDSTHATIATDDIHYIETSNE 283

[Close]

BLAST of Cucsa.178230 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 121/172 (70.35%), Postives = 138/172 (80.23%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFV+VL GWEGSA DS ILRDAI++ NGL VP+         YYYLCDAGYPNAE FLAP
Sbjct: 153 DFVYVLAGWEGSAADSRILRDAISQENGLQVPK--------GYYYLCDAGYPNAEGFLAP 212

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           YKGQRYHLQEW GA NA   AKEYFNMKH +ARNVIERAFG+LKGRW IL GKSYYP+++
Sbjct: 213 YKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGVLKGRWTILRGKSYYPLQV 272

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTY-VTIGGDDIQFVENSNE 172
           QCRTILAC LLHNLINREMT  + +++ DEGDSTY  T   +DIQ++E +NE
Sbjct: 273 QCRTILACTLLHNLINREMTYCNDVEDEDEGDSTYATTTASEDIQYIETTNE 316

[Close]

BLAST of Cucsa.178230 vs. NCBI nr
Match: gi|778730317|ref|XP_011659758.1| (PREDICTED: putative nuclease HARBI1 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-61
Identity = 120/170 (70.59%), Postives = 134/170 (78.82%), Query Frame = 1


Query: 2   FVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAPY 61
           FVFVL GWEGSA DS IL+DAI+R NGL VP+         YYYL D GY NAE FLAPY
Sbjct: 22  FVFVLAGWEGSAADSRILQDAISRPNGLRVPK--------DYYYLVDDGYLNAEGFLAPY 81

Query: 62  KGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKIQ 121
           +GQ YHLQ+W GA NA +  KE+FNMKH +ARNVIERAFG+LK RWAIL GKSYYPVK Q
Sbjct: 82  RGQCYHLQDWHGAENAPSILKEFFNMKHSSARNVIERAFGVLKSRWAILQGKSYYPVKAQ 141

Query: 122 CRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           C TILACCLLHNLINREMTN+D  D+VDEGDST+ T  GDDI ++E SNE
Sbjct: 142 CWTILACCLLHNLINREMTNIDIPDDVDEGDSTHATTAGDDIHYIETSNE 183

[Close]

BLAST of Cucsa.178230 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 7.2e-57
Identity = 114/171 (66.67%), Postives = 127/171 (74.27%), Query Frame = 1


Query: 1   DFVFVLVGWEGSATDSCILRDAIARSNGLHVPQVRSDAFVTSYYYLCDAGYPNAEEFLAP 60
           DFVFVL GWEGSA DS ILRDAI+R NGL VP+         YYYLCDAGYPNAE FLAP
Sbjct: 139 DFVFVLFGWEGSAADSRILRDAISRHNGLKVPK--------GYYYLCDAGYPNAEGFLAP 198

Query: 61  YKGQRYHLQEWLGAGNARATAKEYFNMKHFAARNVIERAFGLLKGRWAILCGKSYYPVKI 120
           Y+G+RYHL EW G  NA  TA+E+FNMKH +ARNVIERAFGLLKGRWAIL GKSYYPV +
Sbjct: 199 YRGERYHLSEWRGESNAPTTAREFFNMKHSSARNVIERAFGLLKGRWAILRGKSYYPVDV 258

Query: 121 QCRTILACCLLHNLINREMTNVDFIDNVDEGDSTYVTIGGDDIQFVENSNE 172
           QCRTI+ACCLLHNLINREMTN + I                +I ++E SNE
Sbjct: 259 QCRTIMACCLLHNLINREMTNSEII----------------EINYIEASNE 285

The following BLAST results are available for this feature:

BLAST of Cucsa.178230 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	6.6e-65	70.76	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	2.1e-63	70.35	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A5BND9_VITVI	1.1e-40	60.87	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1	[more]
M5X5X1_PRUPE	2.5e-40	55.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021413mg PE=4 SV=1	[more]
A0A061EE93_THECC	3.6e-39	56.52	Uncharacterized protein OS=Theobroma cacao GN=TCM_017356 PE=4 SV=1	[more]

BLAST of Cucsa.178230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35695.1	2.0e-25	40.91	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G41980.1	2.3e-21	40.15	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT4G10890.1	2.7e-09	41.79	unknown protein	[more]
AT5G12010.1	2.8e-06	28.89	unknown protein	[more]
AT2G13770.1	3.6e-06	30.71	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]

BLAST of Cucsa.178230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136287\|gb\|ADN34114.1\|	9.4e-65	70.76	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659114872\|ref\|XP_008457266.1\|	1.8e-63	70.76	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]
gi\|307135889\|gb\|ADN33754.1\|	3.0e-63	70.35	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|778730317\|ref\|XP_011659758.1\|	1.3e-61	70.59	PREDICTED: putative nuclease HARBI1 [Cucumis sativus]	[more]
gi\|659111563\|ref\|XP_008455792.1\|	7.2e-57	66.67	PREDICTED: putative nuclease HARBI1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027806	HARBI1_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178230.1	Cucsa.178230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 2..133 score: 8.9
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 2..150 score: 4.8
None	No IPR available	PANTHER	PTHR22930:SF27	SUBFAMILY NOT NAMED	coord: 2..150 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178230	Cucumber (Chinese Long) v3	cgycucB287
Cucsa.178230	Watermelon (97103) v2	cgywmbB323
Cucsa.178230	Wax gourd	cgywgoB366
Cucsa.178230	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178230	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178230	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178230	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178230	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178230	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178230	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178230	Melon (DHL92) v3.5.1	cgymeB322
Cucsa.178230	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178230	Watermelon (97103) v1	cgywmB342
Cucsa.178230	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178230	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178230	Bottle gourd (USVL1VR-Ls)	cgylsiB300
Cucsa.178230	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178230	Melon (DHL92) v3.6.1	cgymedB317
Cucsa.178230	Silver-seed gourd	carcgyB0554