Cucsa.178220 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.178220
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrotransposon protein
Location	scaffold01227 : 280347 .. 281033 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATGGCACATCAGACTCGGGTATCTGGCACAACTTCTACGAATGATGGTCGCGAAGTTACCGGGATGCAATGTACATGCGACCACAGTCATCGACTGCCACATAAAGACGTTGAAGCGCACATACCAGGTAATCACAGAAATGTGCGGTCCGTCATGCAATGGGTTTGGTTGGAATGACGATGCGAAGTGCATCGTTGCTGAGAAGGAGTTGTTTGACAATTGGGTCAAGGTATGTGAAAAGTATAATTGTACACTAATATAATTTTTACTTCAATATGAAACAAGTTTAATATTTGATTTTTCTTTCCTATGCAGAGTCATCCTACAGCCAAGGGCCTGCTAAATAAGCCTTTCCCATATTACGACGAATTGGCGTATGTATTCGGGAAAGATCGTGCAATAGGAGCCCATGCAGAAACCTTTGCCGATGTCGGATTGAACATTCCTCCTGGGTTTGAGGAATTTCCTCACATGGATCTCAATGATATGGAAATTCTTTCCATGTCCAACCATAGGTTTAACATGTCACAAGACGACATCGCACGACCAGGTCGAGAAACCGATAGTAGGACGACTTTGAGTGGTTTGAAGCGAAGGCGAGGAGGGCAGACTTCAGAAACAGCTGATGTCATTAAGGATGTTATGGCTCTTCAAACTGACCAGCTGAGGCTCATTGCAGAATGA

mRNA sequence

acaatggcacatcagactcgggtatctggcacaacttctacgaatgatggtcgcgaagttaccgggatgcaatgtacatgcgaccacagtcatcgactgccacataaagacgttgaagcgcacataccaggtaatcacagaaatgtgcggtccgtcatgcaatgggtttggttggaatgacgatgcgaagtgcatcgttgctgagaaggagttgtttgacaattgggtcaagagtcatcctacagccaagggcctgctaaataagcctttcccatattacgacgaattggcgtatgtattcgggaaagatcgtgcaataggagcccatgcagaaacctttgccgatgtcggattgaacattcctcctgggtttgaggaatttcctcacatggatctcaatgatatggaaattctttccatgtccaaccataggtttaacatgtcacaagacgacatcgcacgaccaggtcgagaaaccgatagtaggacgactttgagtggtttgaagcgaaggcgaggagggcagacttcagaaacagctgatgtcattaaggatgttatggctcttcaaactgaccagctgaggctcattgcagaatga

Coding sequence (CDS)

ACAATGGCACATCAGACTCGGGTATCTGGCACAACTTCTACGAATGATGGTCGCGAAGTTACCGGGATGCAATGTACATGCGACCACAGTCATCGACTGCCACATAAAGACGTTGAAGCGCACATACCAGGTAATCACAGAAATGTGCGGTCCGTCATGCAATGGGTTTGGTTGGAATGACGATGCGAAGTGCATCGTTGCTGAGAAGGAGTTGTTTGACAATTGGGTCAAGAGTCATCCTACAGCCAAGGGCCTGCTAAATAAGCCTTTCCCATATTACGACGAATTGGCGTATGTATTCGGGAAAGATCGTGCAATAGGAGCCCATGCAGAAACCTTTGCCGATGTCGGATTGAACATTCCTCCTGGGTTTGAGGAATTTCCTCACATGGATCTCAATGATATGGAAATTCTTTCCATGTCCAACCATAGGTTTAACATGTCACAAGACGACATCGCACGACCAGGTCGAGAAACCGATAGTAGGACGACTTTGAGTGGTTTGAAGCGAAGGCGAGGAGGGCAGACTTCAGAAACAGCTGATGTCATTAAGGATGTTATGGCTCTTCAAACTGACCAGCTGAGGCTCATTGCAGAATGA

Protein sequence

QWHIRLGYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIVAEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGFEEFPHMDLNDMEILSMSNHRFNMSQDDIARPGRETDSRTTLSGLKRRRGGQTSETADVIKDVMALQTDQLRLIAE*

Homology

[Close]

BLAST of Cucsa.178220 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 5.5e-55
Identity = 115/198 (58.08%), Postives = 139/198 (70.20%), Query Frame = 1


Query: 5   RLGYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKC 64
           R GYLAQL+RMM  KL GC V ATTVIDC IKTLKRT+Q I EM GP+C+GFGWND+ KC
Sbjct: 358 RPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKC 417

Query: 65  IVAEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIP-PG 124
           IVAEKELFDNWV+S P AKGLLN PFPYYDEL YVFG+DRA G  AETFADVG N P  G
Sbjct: 418 IVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGG 477

Query: 125 FEEFPHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETAD 184
           ++ F   D N+ +   + +   ++ QDD+  +RP R ++ +T  SG KR+RG Q     +
Sbjct: 478 YDRFDMGDGNE-DFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVE 537

Query: 185 VIKDVMALQTDQLRLIAE 200
            I   +    +QLR IAE
Sbjct: 538 AIHLALDQTNEQLRQIAE 554

[Close]

BLAST of Cucsa.178220 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.5e-48
Identity = 100/197 (50.76%), Postives = 132/197 (67.01%), Query Frame = 1


Query: 5   RLGYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKC 64
           R GYL QL RMM  K+PG N+HA+T ID  IK +KR +  + EM GP+C+GFGWND+ KC
Sbjct: 396 RPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKC 455

Query: 65  IVAEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGF 124
           IVAEKE+FD+W  SHP AKGLLNK F +YDEL+YVFGKDRA G  AE+FAD+G N PPG+
Sbjct: 456 IVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY 515

Query: 125 EEFPHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETADV 184
           +      + D +   M +   NMS DD+   R  R ++ R   SG KR+R G  +++ D+
Sbjct: 516 DAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDI 575

Query: 185 IKDVMALQTDQLRLIAE 200
           ++  +    +QL  IAE
Sbjct: 576 VRTAIEYGNEQLHRIAE 589

[Close]

BLAST of Cucsa.178220 vs. TrEMBL
Match: A0A0A9TMG5_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-28
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1


Query: 7   GYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIV 66
           GYLAQL + +  ++P C       ID  +KTLKR +  ITEM  PS  GFGWND  KCIV
Sbjct: 50  GYLAQLEKWLHERIPTCEFKGNPHIDSRLKTLKRQFHAITEMLEPSAGGFGWNDKDKCIV 109

Query: 67  AEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADV 117
            +K++FDNWVK HP+A+GL NKPFPY ++L+ VF KDRA G  AE+ ADV
Sbjct: 110 CDKDIFDNWVKGHPSARGLSNKPFPYLEKLSIVFVKDRATGEAAESPADV 159

[Close]

BLAST of Cucsa.178220 vs. TrEMBL
Match: A0A0J8BIR4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-25
Identity = 72/182 (39.56%), Postives = 101/182 (55.49%), Query Frame = 1


Query: 7   GYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIV 66
           G  A+L  +M+ KLPGC   A   I+  +K L++ Y  ITEM  PS +GFGWND+ K + 
Sbjct: 50  GAYAKLETIMLQKLPGCEKKAKPHIESRVKHLRKQYDAITEMLSPSASGFGWNDEEKFVT 109

Query: 67  AEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGF-- 126
             + ++D W+KSH  A GL NKPFP+Y+EL  ++GKDRA+G  + T  DV   +  G   
Sbjct: 110 CPQAVWDEWIKSHKNAAGLRNKPFPFYEELGKIWGKDRAVGNESGTVYDVLQEMEHGARV 169

Query: 127 -EEFPHMDLNDMEILSMSNHRFNMSQDDIARPGRETDSRTTLSGLKRRRGGQTSETADVI 186
            EE    DLN  E    SN   + +Q D   P   T   TT S  + +R    +ET + +
Sbjct: 170 EEEHQVPDLNAEE----SN---SPTQCDPTGPPSSTPQSTTPSSSRTKRA--RTETIEAL 222

[Close]

BLAST of Cucsa.178220 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 64/148 (43.24%), Postives = 83/148 (56.08%), Query Frame = 1


Query: 7   GYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIV 66
           GY   L R ++ K+P C + A   I+  +K LK  Y  I +M GPS +GFGWND  K IV
Sbjct: 47  GYTKVLERYLLKKIPDCTLKANPHIESRVKRLKSHYSAIRDMLGPSASGFGWNDATKTIV 106

Query: 67  AEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGFEE 126
            EKE++  W KSHP A GL  KPFP+Y+ L  VFGKD+A G  +E  AD   NI   F  
Sbjct: 107 VEKEVYRQWCKSHPNATGLFGKPFPHYERLHNVFGKDKACGDTSEDPADHAYNIVKEF-- 166

Query: 127 FPHMDLNDMEI-LSMSNHRFNMSQDDIA 154
           FP    N+ +I L++    F     + A
Sbjct: 167 FPSSPRNEFDIDLNLGEENFESQISETA 192

[Close]

BLAST of Cucsa.178220 vs. TAIR10
Match: AT1G30140.1 (AT1G30140.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 5.5e-06
Identity = 27/94 (28.72%), Postives = 50/94 (53.19%), Query Frame = 1


Query: 22  GCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIVAEKELFDNWVKSHPT 81
           GCN +    +   +K LK  YQ   ++   S +GFGW+ + K   A  E++ +++K+HP 
Sbjct: 58  GCNKNHKNYMS-RLKFLKNLYQSYLDLKRFS-SGFGWDPETKKFTAPDEVWRDYLKAHPN 117

Query: 82  AKGLLNKPFPYYDELAYVFGKDRAIGAHAETFAD 116
            K +  +   ++++L  +FG   A G+ A   +D
Sbjct: 118 HKHMQTESIDHFEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of Cucsa.178220 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 222.2 bits (565), Expect = 7.9e-55
Identity = 115/198 (58.08%), Postives = 139/198 (70.20%), Query Frame = 1


Query: 5   RLGYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKC 64
           R GYLAQL+RMM  KL GC V ATTVIDC IKTLKRT+Q I EM GP+C+GFGWND+ KC
Sbjct: 358 RPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKC 417

Query: 65  IVAEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIP-PG 124
           IVAEKELFDNWV+S P AKGLLN PFPYYDEL YVFG+DRA G  AETFADVG N P  G
Sbjct: 418 IVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGG 477

Query: 125 FEEFPHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETAD 184
           ++ F   D N+ +   + +   ++ QDD+  +RP R ++ +T  SG KR+RG Q     +
Sbjct: 478 YDRFDMGDGNE-DFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVE 537

Query: 185 VIKDVMALQTDQLRLIAE 200
            I   +    +QLR IAE
Sbjct: 538 AIHLALDQTNEQLRQIAE 554

[Close]

BLAST of Cucsa.178220 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 6.2e-52
Identity = 102/196 (52.04%), Postives = 141/196 (71.94%), Query Frame = 1


Query: 7   GYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIV 66
           GYLAQL RMM  KLPG N+  ++ IDCH+K+LK+TY  I EM GPSC+GFGWN++ +CI+
Sbjct: 43  GYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCII 102

Query: 67  AEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGFEE 126
           AE++LFD+W+KSHP AKGLL+K FPYYD+L+YVFGKDRA GA +ETF +VG N+   F +
Sbjct: 103 AERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFND 162

Query: 127 -FPHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETADVI 186
             P  D +D +I +M +   +MS D++   R G+ ++ R   S  KR+RG +  ET +VI
Sbjct: 163 TIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVI 222

Query: 187 KDVMALQTDQLRLIAE 200
           + VM    +QL+ IA+
Sbjct: 223 RSVMEFGNEQLKAIAD 238

[Close]

BLAST of Cucsa.178220 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 1.9e-48
Identity = 100/194 (51.55%), Postives = 130/194 (67.01%), Query Frame = 1


Query: 8   YLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIVA 67
           YL QL RMM  K+PGCN+HA+T ID  IK +KR +  + EM GP+CN FGWND+ KCIVA
Sbjct: 385 YLNQLARMMAFKIPGCNIHAST-IDSRIKLMKRMFHALAEMRGPNCNSFGWNDEKKCIVA 444

Query: 68  EKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGFEEF 127
           EKE+FD+W  SHPTAKGLLNK F +YDEL+YVFGKDRA G  AE+FAD+G N P G++ F
Sbjct: 445 EKEVFDDW--SHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNHPAGYDAF 504

Query: 128 PHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETADVIKD 187
           P     D +   M +   NMS DD+   R  R ++ R   SG KR+  G  +++ D+++ 
Sbjct: 505 PADAAPDTDFPPMYSLGLNMSADDLMETRTARVSERRNVSSGSKRKHPGHATDSGDIVRT 564

Query: 188 VMALQTDQLRLIAE 200
            +    +QL  IAE
Sbjct: 565 AIKYGNEQLHRIAE 575

[Close]

BLAST of Cucsa.178220 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 199.9 bits (507), Expect = 4.2e-48
Identity = 105/194 (54.12%), Postives = 129/194 (66.49%), Query Frame = 1


Query: 8   YLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKCIVA 67
           YL QL RMM  K+PG NVHA+T ID  IK LKR +  I EM GP+C+GFGWND+ KCIVA
Sbjct: 245 YLNQLARMMAFKIPGSNVHAST-IDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVA 304

Query: 68  EKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGFEEF 127
           EKE+FDNWVKSH  AKGLL K F +YDEL+YVFGKDRA G  AE+FADVG N   G+E F
Sbjct: 305 EKEVFDNWVKSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPF 364

Query: 128 PHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETADVIKD 187
                 D     M +   NMS D++   R  R ++ R   SG KR+RGGQ +++ DV++ 
Sbjct: 365 IANATPDTNFQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRT 424

Query: 188 VMALQTDQLRLIAE 200
            +    +QL  IAE
Sbjct: 425 AIEYGNEQLNHIAE 437

[Close]

BLAST of Cucsa.178220 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 198.7 bits (504), Expect = 9.3e-48
Identity = 100/197 (50.76%), Postives = 132/197 (67.01%), Query Frame = 1


Query: 5   RLGYLAQLLRMMVAKLPGCNVHATTVIDCHIKTLKRTYQVITEMCGPSCNGFGWNDDAKC 64
           R GYL QL RMM  K+PG N+HA+T ID  IK +KR +  + EM GP+C+GFGWND+ KC
Sbjct: 396 RPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKC 455

Query: 65  IVAEKELFDNWVKSHPTAKGLLNKPFPYYDELAYVFGKDRAIGAHAETFADVGLNIPPGF 124
           IVAEKE+FD+W  SHP AKGLLNK F +YDEL+YVFGKDRA G  AE+FAD+G N PPG+
Sbjct: 456 IVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGY 515

Query: 125 EEFPHMDLNDMEILSMSNHRFNMSQDDI--ARPGRETDSRTTLSGLKRRRGGQTSETADV 184
           +      + D +   M +   NMS DD+   R  R ++ R   SG KR+R G  +++ D+
Sbjct: 516 DAGAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDI 575

Query: 185 IKDVMALQTDQLRLIAE 200
           ++  +    +QL  IAE
Sbjct: 576 VRTAIEYGNEQLHRIAE 589

The following BLAST results are available for this feature:

BLAST of Cucsa.178220 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	5.5e-55	58.08	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	6.5e-48	50.76	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A9TMG5_ARUDO	3.4e-28	56.36	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A0J8BIR4_BETVU	4.5e-25	39.56	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018220 PE=4 S...	[more]
A0A072UYX1_MEDTR	1.0e-24	43.24	Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ...	[more]

BLAST of Cucsa.178220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30140.1	5.5e-06	28.72	unknown protein	[more]

BLAST of Cucsa.178220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	7.9e-55	58.08	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	6.2e-52	52.04	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	1.9e-48	51.55	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]
gi\|659118456\|ref\|XP_008459129.1\|	4.2e-48	54.12	PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	9.3e-48	50.76	retrotransposon protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.178220.1	Cucsa.178220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 140..171 score: 4.0E-25coord: 7..116 score: 4.0
None	No IPR available	PANTHER	PTHR31704:SF16	SUBFAMILY NOT NAMED	coord: 140..171 score: 4.0E-25coord: 7..116 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.178220	Melon (DHL92) v3.6.1	cgymedB315
Cucsa.178220	Melon (DHL92) v3.6.1	cgymedB317
Cucsa.178220	Silver-seed gourd	carcgyB0554
Cucsa.178220	Cucumber (Chinese Long) v3	cgycucB287
Cucsa.178220	Watermelon (97103) v2	cgywmbB323
Cucsa.178220	Wax gourd	cgywgoB366
Cucsa.178220	Cucurbita maxima (Rimu)	cgycmaB0509
Cucsa.178220	Cucurbita maxima (Rimu)	cgycmaB0510
Cucsa.178220	Cucurbita moschata (Rifu)	cgycmoB0509
Cucsa.178220	Cucurbita moschata (Rifu)	cgycmoB0510
Cucsa.178220	Wild cucumber (PI 183967)	cgycpiB284
Cucsa.178220	Cucumber (Chinese Long) v2	cgycuB274
Cucsa.178220	Melon (DHL92) v3.5.1	cgymeB320
Cucsa.178220	Melon (DHL92) v3.5.1	cgymeB322
Cucsa.178220	Watermelon (Charleston Gray)	cgywcgB319
Cucsa.178220	Watermelon (97103) v1	cgywmB342
Cucsa.178220	Cucurbita pepo (Zucchini)	cgycpeB0491
Cucsa.178220	Cucurbita pepo (Zucchini)	cgycpeB0492
Cucsa.178220	Bottle gourd (USVL1VR-Ls)	cgylsiB300