Cucsa.177600 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.177600
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold01225 : 1577414 .. 1581191 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATTTCTTGAATGCTAAATTTGTAATTACCTTTCTCATGGGTTTAAATGAATCCTATTTACAAATTAGAGCCCAAATTCTGTTGATTGATCCTTTGCCTCCCATAAATAGAGTCTTTTCCCTCATCATTCATGAAGAAAGACAAAGGTCCATTGGATCTTCATCCTCCATTGAGAGCATCACATTATTGGCTAACTCTGAAAGAAGATTTTCTTCTGATAAATCTAAGAAGAAAGACACAAGACCTATATGCTCCAACTGTGGCTATAATGACACACTACTGATGAATGCTACAAGTTACATGACTACCCACCCGGACATAGACTTGCCAACAGCAATAATTTTGTTCATCAAAGGCAGAACAATACAGTCCAAGATGGATATGAGAAAGGGACAGAAGTTTCTAAAAGCAATCAATCTGCATTCTTTGCTAGTCTCAACAATGATCAATATACACAACTTCTGGGCACGCTTCAAACTCATCTCAACACACCTCAAAATGATGAGAATTTAAAAAaTGAGACTACGCACATAGCAGATACTTGCCTATCTAACTCACTCAATGATTCCTTAACATAGATTATTGACTCTAGTGCTTCCTCACATATTTGCCACGACAAGTTTATATTTACAAATCTCTATAGCACTAAGAATATGTTTGTTATCTTTCCCACTAAGACTAAGGTTGAGCATATAGGAGATGTTTTCATATCAAATGATCTAGTCCGGAAAGATGTACTTTATATCCTTGACTTAAATACAACCCACTGTCAGTAAGTACTCTCTTTAAGGATGACAAATTTGCTATGTAATTTTATGATTCTAATTGTCTAATTTAGGACAAGTGGCTTTCAAAAATGATTGGGAAGACTGAATTAACTAATGGACTCTACCTACTTAGGATGAAGAATGAAAGAGTTAATTGCATTCAGCACACTACACTAATGTGTAAaGCCTTGGCCTCTATGTGGCATAAACGAATGAGACATCCCTCTATCAGTAGAATAAATGAGTTAGCTAAGATGATAGAAATTTCTGGCTTTCTAAACTGTAAAGAAGTCTGTCATATTTGTCCCTTAGCTAAATAAAGACGTCTCTCTTTTCCTACATTGAATAATATTATTGAAAATACATTTGATCTTGTGCATTGTGATATATAGGGTCCCTTTAAAACTGTAACACATGTTGGTCATTCATATTTTGTCACCATTGTAGACGATAAATCTAGATACACTTGGGTATATCTTTTGAGAAATAAGATATTCTATAAGTTATTCCTAGATTTTTCAAGATAATTGAAACTCTATTTTCAAAAGCCATTAAGGTCTTTCGATCTGACAATGCTCCAGAGTTGAATTTCAAGGATTTTTTTTGCTAAAACTAAAACAACTCACCAGTTCTCATGGGCCTACACTCCTCAGCAAAATTCAGTAGTGGAAAGAAAGTATCAACACATTCTTAACGTGGCAAGAGCATTGATGTTCCAATCAAAGGCTCCTCTTATCTTCTGGGGAGAATGTATTCTAAGTGATGCATACTTGATCAATAGAACACTTATGGTATTATTATCAAATAACACTTCCTTTCCTACTCTGTTCAAGAAAGAAGCAGATTACAGCATCATCAAGACCTTCGTGTGTCTTGTCTATGCCTCTACTCCCTCAGTAAACAAATCTAAATTTGATCCTAGAGCACAACCTTGTGTTTTTATGGGGTTTCCACCAGGCATAAAAGGGTACAGATTATATGACATAGACAAGAGAAAGTTTTTCATCTCTAGGGATGTCCTATTCTTTGAAGAATTGTTTCCCTTTCATTCTTTCAAAGAAAAAGATATTCTCATCTCTCATGACTTCCTTGAGCAATTCATCATACCATGCCCCCTATTTGATTGCCTATAAAAGGAAGCTATCACCAATCCAACTACTGATGTAAGATCTACGACAGAGGATACCCTTGAAGATAGCCACGGTGTTGATGATCAAGATCCATATGTCAGTTCTCAAAAGAAACCGGTAACACTAACCAAGCACCAATTCCCATCATGACGAGAAAATGCTCTCGGCCACATCACCCACCTTCTTACCTTGTAATCTAACCTCCCAAAACTCAACTTCATTTCCCTTTAAGCAATATCTCTCCTATAATGCCTATTCTCAACATCATAAGAACTATCTATTCAATGTTACCCCCATTTATGAACCTACATATTATCATCAAGCTGTGAAACATCAGACTTGGAGAAAAGCTATGGCTGAGGAAATAGAAGCTATGGAAAGAACCAGCACATGGACCATTGTATCTCTTCCAAAGGATCATCATATTGTTGATAGTAAATGGGTATACAAAATAAAGTGCAAACCAGATGGTACCATTGATAGATACAAGATAAGACTTGTAGCAAAGGGCTATAACCAATAAGAGGGAATCGATTTTTCAGATACCTTTTCACTAGTGGCGAAAATAAGCACTGTAAATTCTTAGCTCTTGCTACATCTTATAACAGGTCCATTAGCCAAATGGATATGAATAATGTCTTCTTCAATGGAGACTTATTTGAAGAAGTACACATGACCCTACCGTTGGGTTATCAAACCTCTCAAGTACCAAGAAAATGAGAGAAATTATCTTGCAAACTAAATAAGTCCATTTATGGTCTTAAGCAAGCATCAAGGCAATGGTTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTCCTTCAGCTATCAACTCAGCCAAAGATACTCTAAAGACACATTTTAAATTAAAGGACCTAGGGCAAGCAAAATATTTCTTAGGTCTAGAGTTATCAAGGTCTCAACAAGGACTTATGCTCTCCCAAATAAAATATTGCCTTCAAATCCTAGAAGATACTAGTTTTCTTGATTCTAAATTAGTTGTAGCGTCTATGGATCCTAATCTGAAGGAGAACAACTAACTAAAGAAGACGCCACTTGCTATAGAAGATTGATTGACAGACTGATATACTTACAAATATCCAGACCTGATATTTGCTTTATTGTCCACCGCTTAAGCCCATTTTTCCACAAGCCTACTAAACATCACCTAGATGTTCATCACCTATTGAAGTACCTCAAGGGTTTCTCAGGACAAGGTGTTTTAATAAAACTTATTGATTTGTTTCACCTAAAAGCTTTTGTTGATGTTGATTGAGGATCGTGCCTTGACACTAGAAGATCAGTCACAGGATTCTATATCTTCTTAGGGGATTCTATAATCTCTTGGAAATCTAAGAAACAAGCAACCGTCTCGAGGTCTTTTGCAAAAGCTGAATATAGAGTCTTGGCATCAGTCACCAGTGAGCTAGTATGGATCACACAACTCCTTACTGATCTTAAAGTAAATACCTTGATGACAACCACTGTCTTTTGTGACAATCAAGTAGCCATTTCTATTGCTTCTAATTCGACATTCTATGAACGAACAAAACACATAGGAATTGATTGTCACTTTGTTCGAGACAAAATAGTTGAAGGGTTTCTAAAGGTTTTGCTTATCAAAACTAGTCTACAACTAGCTGATATGTTTACTAAATCACTACCTTCATCTACCTTGAACAAGCTTATATCCAAGTTGGGAATGAAAGACATTCATC

mRNA sequence

atgattgatttcttgaatgctaaatttgtaattacctttctcatgggtttaaatgaatcctatttacaaattagagcccaaattctgttgattgatcctttgcctcccataaatagagtcttttccctcatcattcatgaagaaagacaaaggtccattggatcttcatcctccattgagagcatcacattattggctaactctgaaagaagattttcttctgataaatctaagaagaaagacacaagacctatatgctccaactgtggctataatgacacactactgatgaatgctacaagttacatgactacccacccggacatagacttgccaacagcaataatttttgcttcctcacatatttgccacgacaagtttatatttacaaatctctatagcactaagaatatgtttgttatctttcccactaagactaaggttgagcatataggagatgttttcatatcaaatgatctagtccggaaagatgacaagtggctttcaaaaatgattgggaagactgaattaactaatggactctacctacttaggatgaagaatgaaagagttaattgcattcagcacactacactaatgattttttttgctaaaactaaaacaactcaccagttctcatgggcctacactcctcagcaaaattcagtagtggaaagaaagtatcaacacattcttaacgtggcaagagcattgatgttccaatcaaaggctcctcttatcttctggggagaatgtattctaagtgatgcatacttgatcaatagaacacttatggtattattatcaaataacacttcctttcctactctgttcaagaaagaagcagattacagcatcatcaagaccttcaactatctattcaatgttacccccatttatgaacctacatattatcatcaagCTGTGAAACATCAGACTtggagaaaagctatggctgaggaaatagaagctatggaaagaaccagcacatggaccattgtatctcttccaaaggatcatcatattgttgatagtaaatgggtatacaaaataaagtgcaaaccagatggtaccattgatagatacaagataagacttcactgtaaattcttagctcttgctacatcttataacaggtccattagccaaatggatatgaataatgtcttcttcaatggagacttatttgaagaagtacacatgaccctaccgttgggttatcaaacctctcaagacctagggcaagcaaaatatttcttaggtctagagttatcaaggtctcaacaaggacttatgctctcccaaataaaatattgccttcaaatcctagaagatactagatcgtgccttgacactagaagatcagtcacaggattctatatcttcttaggggattctataatctcttggaaatctaagaaacaagcaaccgtctcgaggtcttttgcaaaagctgaatatagagtcttggcatcagtcaccagtgagctagtatggatcacacaactccttactgatcttaaagtaaataccttgatgacaaccactgtcttttgtgacaatcaagtagccatttctattgcttctaattcgacattctatgaacgaacaaaacacataggaattgattgtcactttgttcgagacaaaatagttgaagggtttctaaaggttttgcttatcaaaactagtctacaactagctgatatgtttactaaatcactaccttcatctaccttgaacaagcttatatccaagttgggaatGAAAGACATTCATC

Coding sequence (CDS)

ATGATTGATTTCTTGAATGCTAAATTTGTAATTACCTTTCTCATGGGTTTAAATGAATCCTATTTACAAATTAGAGCCCAAATTCTGTTGATTGATCCTTTGCCTCCCATAAATAGAGTCTTTTCCCTCATCATTCATGAAGAAAGACAAAGGTCCATTGGATCTTCATCCTCCATTGAGAGCATCACATTATTGGCTAACTCTGAAAGAAGATTTTCTTCTGATAAATCTAAGAAGAAAGACACAAGACCTATATGCTCCAACTGTGGCTATAATGACACACTACTGATGAATGCTACAAGTTACATGACTACCCACCCGGACATAGACTTGCCAACAGCAATAATTTTTGCTTCCTCACATATTTGCCACGACAAGTTTATATTTACAAATCTCTATAGCACTAAGAATATGTTTGTTATCTTTCCCACTAAGACTAAGGTTGAGCATATAGGAGATGTTTTCATATCAAATGATCTAGTCCGGAAAGATGACAAGTGGCTTTCAAAAATGATTGGGAAGACTGAATTAACTAATGGACTCTACCTACTTAGGATGAAGAATGAAAGAGTTAATTGCATTCAGCACACTACACTAATGATTTTTTTTGCTAAAACTAAAACAACTCACCAGTTCTCATGGGCCTACACTCCTCAGCAAAATTCAGTAGTGGAAAGAAAGTATCAACACATTCTTAACGTGGCAAGAGCATTGATGTTCCAATCAAAGGCTCCTCTTATCTTCTGGGGAGAATGTATTCTAAGTGATGCATACTTGATCAATAGAACACTTATGGTATTATTATCAAATAACACTTCCTTTCCTACTCTGTTCAAGAAAGAAGCAGATTACAGCATCATCAAGACCTTCAACTATCTATTCAATGTTACCCCCATTTATGAACCTACATATTATCATCAAGCTGTGAAACATCAGACTTGGAGAAAAGCTATGGCTGAGGAAATAGAAGCTATGGAAAGAACCAGCACATGGACCATTGTATCTCTTCCAAAGGATCATCATATTGTTGATAGTAAATGGGTATACAAAATAAAGTGCAAACCAGATGGTACCATTGATAGATACAAGATAAGACTTCACTGTAAATTCTTAGCTCTTGCTACATCTTATAACAGGTCCATTAGCCAAATGGATATGAATAATGTCTTCTTCAATGGAGACTTATTTGAAGAAGTACACATGACCCTACCGTTGGGTTATCAAACCTCTCAAGACCTAGGGCAAGCAAAATATTTCTTAGGTCTAGAGTTATCAAGGTCTCAACAAGGACTTATGCTCTCCCAAATAAAATATTGCCTTCAAATCCTAGAAGATACTAGATCGTGCCTTGACACTAGAAGATCAGTCACAGGATTCTATATCTTCTTAGGGGATTCTATAATCTCTTGGAAATCTAAGAAACAAGCAACCGTCTCGAGGTCTTTTGCAAAAGCTGAATATAGAGTCTTGGCATCAGTCACCAGTGAGCTAGTATGGATCACACAACTCCTTACTGATCTTAAAGTAAATACCTTGATGACAACCACTGTCTTTTGTGACAATCAAGTAGCCATTTCTATTGCTTCTAATTCGACATTCTATGAACGAACAAAACACATAGGAATTGATTGTCACTTTGTTCGAGACAAAATAGTTGAAGGGTTTCTAAAGGTTTTGCTTATCAAAACTAGTCTACAACTAGCTGATATGTTTACTAAATCACTACCTTCATCTACCTTGAACAAGCTTATATCCAAGTTGGGAATGAAAGACATTCATC

Protein sequence

MIDFLNAKFVITFLMGLNESYLQIRAQILLIDPLPPINRVFSLIIHEERQRSIGSSSSIESITLLANSERRFSSDKSKKKDTRPICSNCGYNDTLLMNATSYMTTHPDIDLPTAIIFASSHICHDKFIFTNLYSTKNMFVIFPTKTKVEHIGDVFISNDLVRKDDKWLSKMIGKTELTNGLYLLRMKNERVNCIQHTTLMIFFAKTKTTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVLLSNNTSFPTLFKKEADYSIIKTFNYLFNVTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCKFLALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQTSQDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILEDTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTSLQLADMFTKSLPSSTLNKLISKLGMKDIHX
Homology
[Close]
BLAST of Cucsa.177600 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-18
Identity = 51/138 (36.96%), Postives = 81/138 (58.70%), Query Frame = 1 

Query: 453  RRSVTGFYIFLGD-SIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNT 512
            R+S TG+   + D ++I W +K+Q +V+ S  +AEY  L     E +W+  LLT + +  
Sbjct: 1263 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL 1322

Query: 513  LMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTSLQLADMF 572
                 ++ DNQ  ISIA+N + ++R KHI I  HF R+++    + +  I T  QLAD+F
Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1382

Query: 573  TKSLPSSTLNKLISKLGM 590
            TK LP++   +L  KLG+
Sbjct: 1383 TKPLPAARFVELRDKLGL 1400


HSP 2 Score: 73.6 bits (179), Expect = 8.4e-12
Identity = 49/167 (29.34%), Postives = 74/167 (44.31%), Query Frame = 1 

Query: 275  PTLFKKEADYSIIKTF---NYLFNVTP-IYEPTYYHQAVKHQTWRKAMAEEIEAMERTST 334
            P +   E D S+ K     + +FN  P  ++   Y       +W +A+  E+ A +  +T
Sbjct: 865  PQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRD--DKSSWEEAINTELNAHKINNT 924

Query: 335  WTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCK--------------------- 394
            WTI   P++ +IVDS+WV+ +K    G   RYK RL  +                     
Sbjct: 925  WTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARIS 984

Query: 395  ----FLALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQTSQD 413
                 L+L   YN  + QMD+   F NG L EE++M LP G   + D
Sbjct: 985  SFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD 1029


HSP 3 Score: 48.5 bits (114), Expect = 2.9e-04
Identity = 42/148 (28.38%), Postives = 65/148 (43.92%), Query Frame = 1 

Query: 136 KNMFVIFPTKTK-------VEHIGDVF-ISNDLVRKDDKWLSKMIGKTELTNGLYLLRMK 195
           KN FVIF  +         +++  DVF +  D V K +   +  +    + NG   L   
Sbjct: 500 KNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYL--S 559

Query: 196 NERVNCIQHTTLMIFFAKTKTTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLI 255
           NE         +  F  K   ++  +  +TPQ N V ER  + I   AR ++  +K    
Sbjct: 560 NE---------MRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKS 619

Query: 256 FWGECILSDAYLINRTLMVLLSNNTSFP 276
           FWGE +L+  YLINR     L +++  P
Sbjct: 620 FWGEAVLTATYLINRIPSRALVDSSKTP 636

[Close]
BLAST of Cucsa.177600 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-18
Identity = 50/145 (34.48%), Postives = 79/145 (54.48%), Query Frame = 1 

Query: 445  DTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLL 504
            D    +D R+S TG+        ISW+SK Q  V+ S  +AEY        E++W+ + L
Sbjct: 1182 DMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFL 1241

Query: 505  TDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTS 564
             +L ++      V+CD+Q AI ++ NS ++ RTKHI +  H++R+ + +  LKVL I T+
Sbjct: 1242 QELGLHQ-KEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTN 1301

Query: 565  LQLADMFTKSLPSSTLNKLISKLGM 590
               ADM TK +P +        +GM
Sbjct: 1302 ENPADMLTKVVPRNKFELCKELVGM 1325


HSP 2 Score: 68.6 bits (166), Expect = 2.7e-10
Identity = 43/141 (30.50%), Postives = 69/141 (48.94%), Query Frame = 1 

Query: 316 KAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCK------ 375
           KAM EE+E++++  T+ +V LPK    +  KWV+K+K   D  + RYK RL  K      
Sbjct: 828 KAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKK 887

Query: 376 -------------------FLALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQTS 432
                               L+LA S +  + Q+D+   F +GDL EE++M  P G++ +
Sbjct: 888 GIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVA 947


HSP 3 Score: 53.1 bits (126), Expect = 1.2e-05
Identity = 29/81 (35.80%), Postives = 42/81 (51.85%), Query Frame = 1 

Query: 210 HQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVLLS 269
           H+ +   TPQ N V ER  + I+   R+++  +K P  FWGE + +  YLINR+  V L+
Sbjct: 571 HEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLA 630

Query: 270 NNTSFPTLFKKEADYSIIKTF 291
                     KE  YS +K F
Sbjct: 631 FEIPERVWTNKEVSYSHLKVF 651

[Close]
BLAST of Cucsa.177600 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-09
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 445 DTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVW 500
           D   C  TRRS TGF  FLG +IISW +K+Q TVSRS  + EYR LA   +EL W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225


HSP 2 Score: 39.3 bits (90), Expect = 1.8e-01
Identity = 23/61 (37.70%), Postives = 32/61 (52.46%), Query Frame = 1 

Query: 411 QDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILEDTRSCLDTRRSVTGFYIFLGDSIISW 470
           +DLG   YFLG+++     GL LSQ KY  QIL +    LD +   T   + L  S+ + 
Sbjct: 34  KDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA-GMLDCKPMSTPLPLKLNSSVSTA 93

Query: 471 K 472
           K
Sbjct: 94  K 93

[Close]
BLAST of Cucsa.177600 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-08
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1 

Query: 301 EPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTID 360
           EP     A+K   W +AM EE++A+ R  TW +V  P + +I+  KWV+K K   DGT+D
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 361 RYKIRLHCK 370
           R K RL  K
Sbjct: 87  RLKARLVAK 95

[Close]
BLAST of Cucsa.177600 vs. TrEMBL
Match: A0A151TBK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 134/328 (40.85%), Postives = 187/328 (57.01%), Query Frame = 1 

Query: 291 NYLFNVTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYK 350
           +Y+ +++   EP +YHQAVK Q W  AM  EI+A+   +TWTIV LP   H +  KWVYK
Sbjct: 508 HYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEIDALTANNTWTIVDLPSGKHPIGCKWVYK 567

Query: 351 IKCKPDGTIDRYKIRLHCK-------------------------FLALATSYNRSISQMD 410
           IK + DG+++RYK RL  K                          LA+A+S N  + Q+D
Sbjct: 568 IKYRSDGSVERYKARLVAKGFTQTEGLDYFETCAPVEKLTTVRLLLAVASSQNWFLHQLD 627

Query: 411 MNNVFFNGDLFEEVHMTLPLGYQTSQDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILED 470
           +NN F +GDL EEV+MT+P G               +  S+  Q   L +  Y L+  + 
Sbjct: 628 VNNAFLHGDLEEEVYMTIPQG---------------VVWSKPNQVCKLHKSLYMLK--QA 687

Query: 471 TRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLT 530
           +R              FLG+S+ISW+SKKQ+TVSRS ++A+YR LAS + E+ W+T LLT
Sbjct: 688 SR--------------FLGNSLISWRSKKQSTVSRSSSEAKYRALASTSCEIQWLTYLLT 747

Query: 531 DLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTSL 590
           +L V       +FCD+  A  IA+ S F+ERTKHI IDC+ VR+ +    L +L I T+ 
Sbjct: 748 NLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREHLQNHLLHLLPISTTE 804

Query: 591 QLADMFTKSLPSSTLNKLISKLGMKDIH 594
           Q AD+FTK+L  S  + L+SKLG+ DIH
Sbjct: 808 QPADLFTKALDPSPFSHLLSKLGVLDIH 804

[Close]
BLAST of Cucsa.177600 vs. TrEMBL
Match: A0A151TBK6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_019027 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 210 HQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVLLS 269
           HQ S   TPQQN+VVERK++HILNV R+L+F SK P  FW   +    + INR    +L+
Sbjct: 290 HQTSCVETPQQNAVVERKHKHILNVTRSLLFHSKLPKSFWSFAVNHAVFFINRLPSPVLN 349

Query: 270 NNTSFPTLFKKEADYSIIKTFNYL 294
             + F  L+  + + + ++ F  L
Sbjct: 350 QLSPFQLLYNTKPNLNDLRFFGSL 373


HSP 2 Score: 207.2 bits (526), Expect = 5.4e-50
Identity = 140/388 (36.08%), Postives = 197/388 (50.77%), Query Frame = 1 

Query: 197 TTLMIFFAKTKTTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSD 256
           T+L  F A+  T  Q+S      QN VVERK++H+L  ARA+M  S AP  FW E +   
Sbjct: 24  TSLRRFLAEQGTLPQYSCLDAYTQNGVVERKHRHLLETARAVMLTSHAPPHFWAEVVSIA 83

Query: 257 AYLINRTLMVLLSNNTSFPTLFKKEADY------SIIKTFNYLFNVTPIYEPTYYHQAVK 316
           A+LINR     L   T F  L      Y      ++     Y F    + EPT Y +A  
Sbjct: 84  AFLINRQPSSALKGCTPFERLTASPPRYDLRDRRTVRPPERYGFVAAALVEPTTYREAAA 143

Query: 317 HQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCKF 376
           H  W++AMAEEI A+ERT TW +V LP     +  KW    +   +       +      
Sbjct: 144 HPEWQQAMAEEIAALERTGTWGLVPLPARVTPITCKWQEHGRDYDEIFAPVTYMTTVRTI 203

Query: 377 LALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQT--------------------- 436
           LA+A+ +  SISQ+D+ N F NG+L EEV+M  PLG  +                     
Sbjct: 204 LAVASVHQWSISQLDVKNAFLNGELCEEVYMQPPLGILSLMACDDHQYIDFVKKHLSDKF 263

Query: 437 -SQDLGQAKYFLGLELSRSQQGLMLSQIKYC-LQILEDTRSCLD--TRRSVTGFYIFLGD 496
              D+G   YFLG+E++ +  G  LSQ     L++  D     D   RRS++ + +FLG 
Sbjct: 264 LMSDMGPLLYFLGIEVTSTPVGYYLSQENSLQLKVYFDATWTSDHSDRRSLSVYGVFLGS 323

Query: 497 SIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAI 554
           S+I+WK+KKQ  VS S A+AE R LAS+T E  W+  LL D  V+    T +  D+  AI
Sbjct: 324 SLIAWKTKKQTAVSCSSAEAELRALASLTVEATWLRWLLQDFGVSVTALTPLLSDSIGAI 383

[Close]
BLAST of Cucsa.177600 vs. TrEMBL
Match: A5BHI3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007978 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.6e-46
Identity = 146/488 (29.92%), Postives = 219/488 (44.88%), Query Frame = 1 

Query: 202 FFAKTKTTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLIN 261
           F +     H+ S  +T QQNS+ ERK++HI+ +   L+ QS  P  FW +  L+  ++IN
Sbjct: 285 FLSDNGIFHRLSCPHTSQQNSLAERKHRHIVEMGLTLLEQSGLPKKFWVDAFLTSIFIIN 344

Query: 262 R-------------TLMVLLSNNTSFP-TLFKKEADYSIIKTFNY-----LFNVTPIYEP 321
           R             +  V +S N  F  T+F       ++ + +      L     I +P
Sbjct: 345 RLPTKKGFRCYDPSSRRVYISINVIFDETVFPARVQSPLMDSGSRVPSTALHASVIISKP 404

Query: 322 TYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRY 381
             Y QA     W  AM  E +A+ +  TWT+   P   ++V SKWV+K KC P+G+I+R 
Sbjct: 405 HSYAQAAAIPKWHLAMESEFQALLKNDTWTLCPRPPGKNVVPSKWVFKCKCHPNGSIERL 464

Query: 382 KIRLHC-------------------------KFLALATSYNRSISQMDMNNVFFNGDLFE 441
           K +L                             LALA S+N  I Q+DM+N F +G L E
Sbjct: 465 KAQLVAVGYLQRSGIDFFDTFSPIIKPSTVRMVLALAVSFNWDIRQLDMSNAFLHGILDE 524

Query: 442 EVHMTLPLGYQTSQD------------LGQAKYFLGLELSRSQQGLM---LSQIKYCLQI 501
           EV+M  P G++   +                + F+   +S  Q       L Q+ Y L I
Sbjct: 525 EVYMAEPKGFEDPTNPQFVFYVDDILVTSNVRSFIDELISNLQLDFAMKDLGQLSYFLGI 584

Query: 502 LEDTRSCLDTRRSVTGFYIFL--------------------------------------G 561
            E TR   D     T + I L                                      G
Sbjct: 585 -EATRDSSDLHLRQTRYIINLLDRVNLISIRPYRAPCVSGPKAGDPDDRRSMCGYGVFVG 644

Query: 562 DSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVA 593
            ++ISW +KKQ  VS+S  +AEYR LA VT+E+ W+  LL +L+++      ++CDN  A
Sbjct: 645 PNLISWSAKKQPVVSKSSIEAEYRCLALVTAEVYWLRMLLCELEISLDSPPVIWCDNISA 704

[Close]
BLAST of Cucsa.177600 vs. TrEMBL
Match: Q8GZY7_ORYSJ (Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0013D02.15 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.3e-43
Identity = 138/434 (31.80%), Postives = 207/434 (47.70%), Query Frame = 1 

Query: 208  TTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVL 267
            T  QFS      QN VVERK++H+L  ARAL+  S  P  FW E + +  YL+N      
Sbjct: 1637 TLAQFSCPGAHAQNGVVERKHRHLLETARALLLGSCVPPHFWAEAVFTANYLVNIQPSSA 1696

Query: 268  LSNNTSFPTLFKKEADYSIIKTFNYLFNV--------TPIYEPTYY------HQAVKHQT 327
            L     +  L  K  DY  ++ F Y+  V          + +P  +        A     
Sbjct: 1697 LHGGIPYEHLCSKLPDYFGLRLFGYVCYVLLAPHTTSASLVDPLSFLFLPDASIASTRPE 1756

Query: 328  WRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCK---- 387
             + AMAEEI A+ERT  W +V LP     +  KWVYK +   D   + +    H      
Sbjct: 1757 SQLAMAEEIAALERTGMWDLVPLPAHVCPITCKWVYKQEHGRDYD-ETFAHVAHMTTVRT 1816

Query: 388  FLALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGY-----QTSQDLGQ--------- 447
              A+A+    SIS +D+ N F NG+L EEV+M  P GY     +T  +L           
Sbjct: 1817 LFAVASIREWSISHLDVKNAFLNGELHEEVYMRPPPGYSIPEVETPMELNVHLCATYGEP 1876

Query: 448  ----------AKYFLGLELSRSQQGLMLSQIKYC------LQILEDTRSCLDT--RRSVT 507
                        Y   L + R  +G ++ ++ +       LQ   D     D+  RRS++
Sbjct: 1877 LSDPTHYHHILHYTRVLRVLRYLRGTIVHRLFFPRSSSLQLQAYCDATWASDSSDRRSLS 1936

Query: 508  GFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTV 567
             F +FLG S+ISWK+KKQ  VS S A+AE   +A V +E+ W+  LL D  V+  M T +
Sbjct: 1937 AFCVFLGGSLISWKTKKQTAVSHSSAEAELHAMALVIAEVTWLRWLLEDFGVSVSMPTPL 1996

Query: 568  FCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTSLQLADMFTKSLPS 592
              D+  AIS+A +   +E +KH+G+D  + R ++ +G +    + + +QLAD+FTK+   
Sbjct: 1997 LSDSTDAISMARDPVKHELSKHVGVDAFYTRAQVQDGVVAPRYVPSEIQLADLFTKAQTG 2056

[Close]
BLAST of Cucsa.177600 vs. TrEMBL
Match: Q8GZY7_ORYSJ (Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0013D02.15 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1 

Query: 301 EPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTID 360
           EP  + +A KH  WR AM  E++A++   TW +  LP+ H  +  KWV+K+K    G I 
Sbjct: 851 EPRSFAEAEKHAAWRAAMRSEMDAVQENRTWELADLPRGHRAITLKWVFKLKRDEAGAIV 910

Query: 361 RYKIRLHCK-------------------------FLALATSYNRSISQMDMNNVFFNGDL 408
           ++K RL  +                          LALA      +  MD+ + F NGDL
Sbjct: 911 KHKARLVARGFVQQEGIDYDDAFAPVARMESVRLLLALAAQEGWGVHHMDVKSAFLNGDL 970


HSP 2 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 30/93 (32.26%), Postives = 57/93 (61.29%), Query Frame = 1 

Query: 450  LDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKV 509
            +DT +S +G   FL + ++SW+S KQ  V+ S  +AE+   ++ +++ +W+ +LL DL  
Sbjct: 1216 IDTSKSTSGILFFLDECLVSWQSVKQQVVALSSCEAEFMAASAASTQALWLARLLGDLLS 1275

Query: 510  NTLMTTTVFCDNQVAISIASNSTFYERTKHIGI 543
                   +  D++ A+++A N  F+ER+KHI +
Sbjct: 1276 RDTGAVELRVDSKSALALAKNPVFHERSKHIRV 1308


HSP 3 Score: 60.5 bits (145), Expect = 8.2e-06
Identity = 29/78 (37.18%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 216 YTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVLLSNNTSFP 275
           Y+PQQN VVER  Q ++ +ARAL+ Q   P IFWGE +++  Y++NR+ +  L   T + 
Sbjct: 564 YSPQQNGVVERCNQTVVGMARALLKQRGMPAIFWGEAVVTAVYILNRSPIKALDGRTPYE 623

Query: 276 TLFKKEADYSIIKTFNYL 294
               ++   S ++ F  L
Sbjct: 624 AWHGRKPAVSHLRVFGCL 641


HSP 4 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 111/284 (39.08%), Postives = 149/284 (52.46%), Query Frame = 1 

Query: 345 SKWVYKIKCKPDGTIDRYKIRLHCK-------------------------FLALATSYNR 404
           ++W+YKIK + DG+++RYK  L  K                          LA+A +   
Sbjct: 562 TRWIYKIKTRSDGSVERYKAHLVAKGFTQEYRIDYEETFAPVARISSVRALLAIAAARKW 621

Query: 405 SISQMDMNNVFFNGDLFEEVHMTLPLGY-----QTSQDLGQAK---YFLGLELSRSQQGL 464
            + QMD+ N F NGDL EE++M  P G      + SQ L   +   Y   L + R  +G 
Sbjct: 622 DLFQMDVKNAFLNGDLSEEIYMQPPPGLSVESNKVSQYLSAPRSTHYAAILRILRYLKGT 681

Query: 465 MLSQIKYCLQILEDTRSCLDT--------RRSVTGFYIFLGDSIISWKSKKQATVSRSFA 524
           +   + Y  Q     R+  D         RRS TG+   LG  +ISW+SKKQ  V+RS  
Sbjct: 682 LFHGLFYSAQSPLVLRAFSDVDWAGDPIDRRSTTGYCFLLGSFLISWRSKKQTFVARSST 741

Query: 525 KAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGID 584
           +AEY   A  TSEL+W+  LL DL V+T   T ++CDNQ AI IA N  F+ERTKHI ID
Sbjct: 742 EAEYHAFADSTSELLWLRWLLKDLGVSTSFATPLYCDNQSAIHIAHNDVFHERTKHIEID 801

Query: 585 CHFVRDKIVEGFLKVLLIKTSLQLADMFTKSLPSSTLNKLISKL 588
           CHF+R  +V G LK+  + +  QLAD+FTKSLP      L+  L
Sbjct: 802 CHFIRYHLVHGALKLFSVSSKDQLADIFTKSLPKRRTRDLVDNL 845

[Close]
BLAST of Cucsa.177600 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 127.1 bits (318), Expect = 3.6e-29
Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 1 

Query: 429 QGLMLS-QIKYCLQILEDT--RSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKA 488
           QGL  S Q +  LQ+  D   +SC DTRRS  G+ +FLG S+ISWKSKKQ  VS+S A+A
Sbjct: 430 QGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEA 489

Query: 489 EYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCH 548
           EYR L+  T E++W+ Q   +L++     T +FCDN  AI IA+N+ F+ERTKHI  DCH
Sbjct: 490 EYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 549

Query: 549 FVRDKIV 553
            VR++ V
Sbjct: 550 SVRERSV 556


HSP 2 Score: 101.3 bits (251), Expect = 2.1e-21
Identity = 56/146 (38.36%), Postives = 77/146 (52.74%), Query Frame = 1 

Query: 291 NYLFNVTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYK 350
           ++L  +    EP+ Y++A +   W  AM +EI AME T TW I +LP +   +  KWVYK
Sbjct: 75  SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134

Query: 351 IKCKPDGTIDRYKIRLHCK-------------------------FLALATSYNRSISQMD 410
           IK   DGTI+RYK RL  K                          LA++  YN ++ Q+D
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194

Query: 411 MNNVFFNGDLFEEVHMTLPLGYQTSQ 412
           ++N F NGDL EE++M LP GY   Q
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQ 220


HSP 3 Score: 43.9 bits (102), Expect = 4.0e-04
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1 

Query: 411 QDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILEDT 447
           +DLG  KYFLGLE++RS  G+ + Q KY L +L++T
Sbjct: 311 RDLGPLKYFLGLEIARSAAGINICQRKYALDLLDET 346

[Close]
BLAST of Cucsa.177600 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 

Query: 445 DTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVW 500
           D   C  TRRS TGF  FLG +IISW +K+Q TVSRS  + EYR LA   +EL W
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225


HSP 2 Score: 39.3 bits (90), Expect = 9.9e-03
Identity = 23/61 (37.70%), Postives = 32/61 (52.46%), Query Frame = 1 

Query: 411 QDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILEDTRSCLDTRRSVTGFYIFLGDSIISW 470
           +DLG   YFLG+++     GL LSQ KY  QIL +    LD +   T   + L  S+ + 
Sbjct: 34  KDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNA-GMLDCKPMSTPLPLKLNSSVSTA 93

Query: 471 K 472
           K
Sbjct: 94  K 93

[Close]
BLAST of Cucsa.177600 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1 

Query: 301 EPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTID 360
           EP     A+K   W +AM EE++A+ R  TW +V  P + +I+  KWV+K K   DGT+D
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 361 RYKIRLHCK 370
           R K RL  K
Sbjct: 87  RLKARLVAK 95

[Close]
BLAST of Cucsa.177600 vs. NCBI nr
Match: gi|970022768|ref|XP_015072707.1| (PREDICTED: uncharacterized protein LOC107016901 [Solanum pennellii])

HSP 1 Score: 231.9 bits (590), Expect = 3.0e-57
Identity = 152/458 (33.19%), Postives = 221/458 (48.25%), Query Frame = 1 

Query: 210 HQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIF------WGECILSDAYLINRT 269
           HQ S  YTP QN V ERK++H+L  ARA+ FQ  A  IF          +  D      T
Sbjct: 139 HQRSCPYTPHQNGVAERKHRHLLETARAIKFQEDADPIFDTSPQNQMPQVSQDVVHRRST 198

Query: 270 LMVLLSNNTSFPTLFKKEAD---YSIIKTFNYLFNVTPIY-----------EPTYYHQAV 329
             V    + +   L K+ A    YSI    +Y  +VTP Y           EPT Y  A+
Sbjct: 199 RPVKPPLSQTDYVLSKQPAGHCLYSITDVVDY-DSVTPTYRRFITQFSLEKEPTSYKDAI 258

Query: 330 KHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCK 389
           +   W +AM +EI A++   TW +  LP D   +  KWVYK+K   +  +DR+K RL   
Sbjct: 259 QDPIWIQAMQDEIHALKDNHTWELTQLPTDKKAIGCKWVYKVKYTVERKVDRFKARL--- 318

Query: 390 FLALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQ--------------------- 449
                      I+Q D+ N F  GDL EEV+M LP+G+                      
Sbjct: 319 ----------DINQRDVFNAFLQGDLNEEVYMELPMGFVHTSEEGTVCNDHNLILETKKS 378

Query: 450 -----TSQDLGQAKYFLGLELSRSQQGLMLSQIKYCLQIL-------------------- 509
                 S+DLG   YFLG+E SR++ G+++ Q KY L+++                    
Sbjct: 379 LKDNFKSKDLGNMSYFLGIEFSRNETGILMHQRKYSLELISEMGLSSYKPVGTPIELNQK 438

Query: 510 --------------EDTR------------SCLDTRRSVTGFYIFLGDSIISWKSKKQAT 569
                         E+ R            SC + R+S+TG+ I  G+S+ISWKSKKQ T
Sbjct: 439 FTTTEFDLHFPPADENDRLLSDPSVYQKLVSCPNNRKSITGYMITYGNSLISWKSKKQNT 498

Query: 570 VSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAISIASNSTFYERT 576
           + RS  +AEYR LAS  +E++W+T L  +L V   +   ++ D++  I IA+   F+E+T
Sbjct: 499 ILRSSVEAEYRSLASTFAEIIWLTGLFKELGVQVKLLVPIYSDSKSTIQIAAYPVFHEQT 558

[Close]
BLAST of Cucsa.177600 vs. NCBI nr
Match: gi|1012353243|gb|KYP64431.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 134/328 (40.85%), Postives = 187/328 (57.01%), Query Frame = 1 

Query: 291 NYLFNVTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYK 350
           +Y+ +++   EP +YHQAVK Q W  AM  EI+A+   +TWTIV LP   H +  KWVYK
Sbjct: 508 HYVLSLSTHEEPKFYHQAVKSQEWVVAMKAEIDALTANNTWTIVDLPSGKHPIGCKWVYK 567

Query: 351 IKCKPDGTIDRYKIRLHCK-------------------------FLALATSYNRSISQMD 410
           IK + DG+++RYK RL  K                          LA+A+S N  + Q+D
Sbjct: 568 IKYRSDGSVERYKARLVAKGFTQTEGLDYFETCAPVEKLTTVRLLLAVASSQNWFLHQLD 627

Query: 411 MNNVFFNGDLFEEVHMTLPLGYQTSQDLGQAKYFLGLELSRSQQGLMLSQIKYCLQILED 470
           +NN F +GDL EEV+MT+P G               +  S+  Q   L +  Y L+  + 
Sbjct: 628 VNNAFLHGDLEEEVYMTIPQG---------------VVWSKPNQVCKLHKSLYMLK--QA 687

Query: 471 TRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLT 530
           +R              FLG+S+ISW+SKKQ+TVSRS ++A+YR LAS + E+ W+T LLT
Sbjct: 688 SR--------------FLGNSLISWRSKKQSTVSRSSSEAKYRALASTSCEIQWLTYLLT 747

Query: 531 DLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKTSL 590
           +L V       +FCD+  A  IA+ S F+ERTKHI IDC+ VR+ +    L +L I T+ 
Sbjct: 748 NLAVPFTAPALLFCDSASARHIAAISVFHERTKHIDIDCYVVREHLQNHLLHLLPISTTE 804

Query: 591 QLADMFTKSLPSSTLNKLISKLGMKDIH 594
           Q AD+FTK+L  S  + L+SKLG+ DIH
Sbjct: 808 QPADLFTKALDPSPFSHLLSKLGVLDIH 804

[Close]
BLAST of Cucsa.177600 vs. NCBI nr
Match: gi|1012353243|gb|KYP64431.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-08
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 210 HQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSDAYLINRTLMVLLS 269
           HQ S   TPQQN+VVERK++HILNV R+L+F SK P  FW   +    + INR    +L+
Sbjct: 290 HQTSCVETPQQNAVVERKHKHILNVTRSLLFHSKLPKSFWSFAVNHAVFFINRLPSPVLN 349

Query: 270 NNTSFPTLFKKEADYSIIKTFNYL 294
             + F  L+  + + + ++ F  L
Sbjct: 350 QLSPFQLLYNTKPNLNDLRFFGSL 373


HSP 2 Score: 218.0 bits (554), Expect = 4.4e-53
Identity = 133/334 (39.82%), Postives = 181/334 (54.19%), Query Frame = 1 

Query: 296 VTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKP 355
           VT  +EP  Y +AVK   WR+AM +EIEA+E   TWT+  L      + SKWVYKI    
Sbjct: 486 VTASHEPQSYSEAVKDSRWREAMRKEIEALENNRTWTVEDLLPGKKALGSKWVYKINYNS 545

Query: 356 DGTIDRYKIRLHC-------------------------KFLALATSYNRSISQMD--MNN 415
           DGTI+RYK RL                            FLA+A + N  + QMD  +N 
Sbjct: 546 DGTIERYKARLVIFGNKQVEGIDYNETFALVAKMVTVRAFLAVAAAKNWELHQMDEQLNI 605

Query: 416 VFF---------NGDLFEEVHMTLPLGYQTSQDLGQAKYFLGLELSRSQQGLMLSQIKYC 475
           + +         NG+        L   +   +DLG  KYFLG+E++RSQ+    S ++  
Sbjct: 606 LVYVDDLVISGNNGNAIWRFKKYLSRCFHM-KDLGTLKYFLGVEVARSQKAD--SDLRLY 665

Query: 476 LQILEDTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVW 535
                D   C  TRRS+T +++ LG + ISWK+KKQ TVSRS A+AEYR +A+   EL W
Sbjct: 666 AYCDSDWAGCPLTRRSLTRYFVLLGQAPISWKTKKQLTVSRSSAEAEYRSMATAACELKW 725

Query: 536 ITQLLTDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVL 594
           +  LL    V       + CDNQ A+ IA N  F+ERTKHI +DCHF+R +I  G ++  
Sbjct: 726 LKGLLHSSGVGHPDPMRLHCDNQAALHIAMNPIFHERTKHIEVDCHFIRGEIQNGNIRPS 785

[Close]
BLAST of Cucsa.177600 vs. NCBI nr
Match: gi|951066925|ref|XP_014524081.1| (PREDICTED: uncharacterized protein LOC106780319 [Vigna radiata var. radiata])

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-51
Identity = 124/330 (37.58%), Postives = 180/330 (54.55%), Query Frame = 1 

Query: 292 YLFNVTPIYEPTYYHQAVKHQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKI 351
           Y   ++   EP  Y +A +   W   M +E++A++   TWT+  LP   + +  +WVYKI
Sbjct: 351 YTLAISADKEPRSYKEAKEKYEWVIDMQKELQALQDNGTWTLTQLPPGKNSIGCRWVYKI 410

Query: 352 KCKPDGTIDRYKIRLHCK-------------------------FLALATSYNRSISQMDM 411
           K K DG+I RYK RL  K                          LA A + N  + Q+D+
Sbjct: 411 KYKADGSIKRYKARLVAKGYTQQEGIDFLDTFSPVAKLTTVRIILATAAAKNWHLHQLDI 470

Query: 412 NNVFFNGDLFEEVHMTLPLGYQTSQDLGQAKYFLGLELSRSQQGLML---SQIKYCLQIL 471
           +N F +GDL EEV+M  P G     D+ + ++ L    S   QG+     S I+      
Sbjct: 471 DNAFLHGDLNEEVYMEPPPGL----DIQEGQHMLRYIKSSPSQGIFFATDSNIQIKAFSD 530

Query: 472 EDTRSCLDTRRSVTGFYIFLGDSIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQL 531
            D  +C +TRRS T F IFLG S++SWK+KKQ+ VSRS  +AEYR LA+   E+ WI+  
Sbjct: 531 SDWATCPNTRRSTTEFCIFLGSSLVSWKTKKQSNVSRSSTEAEYRALAATVCEIQWIS-- 590

Query: 532 LTDLKVNTLMTTTVFCDNQVAISIASNSTFYERTKHIGIDCHFVRDKIVEGFLKVLLIKT 591
           L DL + T  T  ++CDN+ AI IA N +++ERT HI +DCH  R+KI    L +L I++
Sbjct: 591 LQDLNIETTTTAALYCDNKSAIHIAHNQSYHERTNHIELDCHVFREKIQANLLHLLPIRS 650

Query: 592 SLQLADMFTKSLPSSTLNKLISKLGMKDIH 594
           + QLA++FTK         ++ KLG+ +IH
Sbjct: 651 NEQLAEIFTKFPHRVRFQFIVPKLGLVNIH 674

[Close]
BLAST of Cucsa.177600 vs. NCBI nr
Match: gi|284434632|gb|ADB85351.1| (putative spotted leaf protein 11 [Phyllostachys edulis])

HSP 1 Score: 207.2 bits (526), Expect = 7.8e-50
Identity = 140/388 (36.08%), Postives = 197/388 (50.77%), Query Frame = 1 

Query: 197 TTLMIFFAKTKTTHQFSWAYTPQQNSVVERKYQHILNVARALMFQSKAPLIFWGECILSD 256
           T+L  F A+  T  Q+S      QN VVERK++H+L  ARA+M  S AP  FW E +   
Sbjct: 24  TSLRRFLAEQGTLPQYSCLDAYTQNGVVERKHRHLLETARAVMLTSHAPPHFWAEVVSIA 83

Query: 257 AYLINRTLMVLLSNNTSFPTLFKKEADY------SIIKTFNYLFNVTPIYEPTYYHQAVK 316
           A+LINR     L   T F  L      Y      ++     Y F    + EPT Y +A  
Sbjct: 84  AFLINRQPSSALKGCTPFERLTASPPRYDLRDRRTVRPPERYGFVAAALVEPTTYREAAA 143

Query: 317 HQTWRKAMAEEIEAMERTSTWTIVSLPKDHHIVDSKWVYKIKCKPDGTIDRYKIRLHCKF 376
           H  W++AMAEEI A+ERT TW +V LP     +  KW    +   +       +      
Sbjct: 144 HPEWQQAMAEEIAALERTGTWGLVPLPARVTPITCKWQEHGRDYDEIFAPVTYMTTVRTI 203

Query: 377 LALATSYNRSISQMDMNNVFFNGDLFEEVHMTLPLGYQT--------------------- 436
           LA+A+ +  SISQ+D+ N F NG+L EEV+M  PLG  +                     
Sbjct: 204 LAVASVHQWSISQLDVKNAFLNGELCEEVYMQPPLGILSLMACDDHQYIDFVKKHLSDKF 263

Query: 437 -SQDLGQAKYFLGLELSRSQQGLMLSQIKYC-LQILEDTRSCLD--TRRSVTGFYIFLGD 496
              D+G   YFLG+E++ +  G  LSQ     L++  D     D   RRS++ + +FLG 
Sbjct: 264 LMSDMGPLLYFLGIEVTSTPVGYYLSQENSLQLKVYFDATWTSDHSDRRSLSVYGVFLGS 323

Query: 497 SIISWKSKKQATVSRSFAKAEYRVLASVTSELVWITQLLTDLKVNTLMTTTVFCDNQVAI 554
           S+I+WK+KKQ  VS S A+AE R LAS+T E  W+  LL D  V+    T +  D+  AI
Sbjct: 324 SLIAWKTKKQTAVSCSSAEAELRALASLTVEATWLRWLLQDFGVSVTALTPLLSDSIGAI 383

The following BLAST results are available for this feature:
BLAST of Cucsa.177600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
COPIA_DROME1.6e-1836.96Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
POLX_TOBAC6.0e-1834.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
M810_ARATH2.3e-0956.36Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
M820_ARATH1.9e-0843.48Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of Cucsa.177600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TBK6_CAJCA1.5e-5540.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A0A151TBK6_CAJCA5.1e-0840.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
A5BHI3_VITVI1.6e-4629.92Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007978 PE=4 SV=1[more]
Q8GZY7_ORYSJ1.3e-4331.80Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0013D02.15... [more]
Q8GZY7_ORYSJ3.8e-1131.82Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0013D02.15... [more]
BLAST of Cucsa.177600 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.13.6e-2951.18 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.11.3e-1056.36ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.11.1e-0943.48ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
BLAST of Cucsa.177600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|970022768|ref|XP_015072707.1|3.0e-5733.19PREDICTED: uncharacterized protein LOC107016901 [Solanum pennellii][more]
gi|1012353243|gb|KYP64431.1|2.1e-5540.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|1012353243|gb|KYP64431.1|7.4e-0840.48Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|951066925|ref|XP_014524081.1|2.4e-5137.58PREDICTED: uncharacterized protein LOC106780319 [Vigna radiata var. radiata][more]
gi|284434632|gb|ADB85351.1|7.8e-5036.08putative spotted leaf protein 11 [Phyllostachys edulis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.177600.1Cucsa.177600.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 202..247
score: 3.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 200..268
score: 1.82
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 329..366
score: 1.0E-7coord: 411..446
score: 3.9E-5coord: 370..410
score: 2.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..514
score: 3.9
NoneNo IPR availablePANTHERPTHR11439:SF185SUBFAMILY NOT NAMEDcoord: 6..514
score: 3.9
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 411..546
score: 6.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.177600Cucumber (Chinese Long) v3cgycucB281
Cucsa.177600Watermelon (97103) v2cgywmbB317
Cucsa.177600Wax gourdcgywgoB360
Cucsa.177600Cucurbita maxima (Rimu)cgycmaB0497
Cucsa.177600Cucurbita maxima (Rimu)cgycmaB0499
Cucsa.177600Cucurbita moschata (Rifu)cgycmoB0499
Cucsa.177600Cucurbita moschata (Rifu)cgycmoB0501
Cucsa.177600Wild cucumber (PI 183967)cgycpiB278
Cucsa.177600Cucumber (Chinese Long) v2cgycuB268
Cucsa.177600Melon (DHL92) v3.5.1cgymeB317
Cucsa.177600Watermelon (Charleston Gray)cgywcgB312
Cucsa.177600Watermelon (97103) v1cgywmB334
Cucsa.177600Cucurbita pepo (Zucchini)cgycpeB0487
Cucsa.177600Cucurbita pepo (Zucchini)cgycpeB0489
Cucsa.177600Bottle gourd (USVL1VR-Ls)cgylsiB297
Cucsa.177600Melon (DHL92) v3.6.1cgymedB312
Cucsa.177600Silver-seed gourdcarcgyB0858
Cucsa.177600Silver-seed gourdcarcgyB0928