Cucsa.177290 (gene) Cucumber (Gy14) v1

NameCucsa.177290
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionABC transporter family protein
Locationscaffold01225 : 1324491 .. 1325973 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGCTTTTGGAGTAAATGTCTTGACCATTATTGTTACTGCATTGCTTGGAATTACTATGAAAATTGGTGGAAGAAGACGGAGGGTATGTTTCACTTATCACAGGTTGCCCCTAGTTTTCTACATTCACAAAGCAAAAACAGTGACCAAATTCTTAATTTCCACAACGACTAATTAAGATATCTTCAAGAGTCCTTTTCATCTTAAGATTTTGTGGTTGGTTTTCATTGTTCGTCATTATTCAATGTCTAATATCTCTGAACTTTAAAGACTTGTAGATAAAAATTTCTATGTTGATGAGTTAGAATCACTCAGTTATTACAAATATCCAGCCTTGGGAAAATTGAGCTTCATGCTAGTTTCCATAGTTTGTTGGTCATTTGATGATTTAGACTTCTGTTAAGTATCGGAAACACAAGAAAAACGCTAAAGTAACTATATTGCAATATCAATGAAGTGATTAAAATATCAATAGCCTTTTGATTGGACTCTCTCTCTCAAAGTCCCATTATGAAGAACCCCGCCAAAATGATCACGTAAGGACTGTTGTAACTGATGGTATGTTCATATTGATTTCTTGCGTTGTTTCCATACTGCATTTATCAGTTTTCCACACTTCTTTTTGTAGAATTTTCAGAGAAGTCTTCTGGAGAAAATTTTCTTTCATTTCCTTCCAGCCATTGGACTATGTTTATCACTCTTTGAGATGATGTTTCTTCTGAGGAAATTATTCACCGGTGATGTTGTTGAATACCATGAGTGGTTATCAACAAGTTCACTACTTGCAGTCTGGGTAAGCTATCTAACCTTAGGTTACTTGTCATTAGTTGTTTTTCATGATCTATACAACTTTTTCTTTATTGTTTGTTTTATGAGTTTCTTTGTGAATATGTAGATTTTCACTTCAATCTTTGCAAATTGTTCCAACTTTGAACACATATTTAACAACAAAATGCTCTGTTTATGGTGGATTGTGAGAGCAATATTTGGGATTTTCATTTTCGTGTCGACATATGCAGACTTTGAGGTACTCATATTGTCTCCTAACTGTATCATTATATTCTGTTATCATCATGTTTGTTCCTACATTTTACTATTAACTTAATTTCATCTTGTGATCTCATCCATATATCTAGGATTTTGATCCTCATTCCGTTACTTTTAAATGAACTTACATGTCACTCTGAAGTTTGATTCTTTTATTTGTTTAATTCTTATTTTGGACTGCTGTAACTTCGTAAGTCTTCGAGAACTTTTCTAGTCATAACTCGTAAAATATTTTATACACATCGCTGGACTATGAATGCTTATTGAATTGCGTAAAGTGTGCACTAATAATAACAAGTTTTTCTTGTATAGATACTCAAAACAGTGAACAGCAGTTTTGTTGTTTTGTTGGATGTTTTGTTTGGCACATTAGCATTCATTATCAGTTCAGAGCATGCAAAAAGCAGGTACGTTAAGTTTTAATATCAATGGATGA

mRNA sequence

ATTTGCTTTTGGAGTAAATGTCTTGACCATTATTGTTACTGCATTGCTTGGAATTACTATGAAAATTGGTGGAAGAAGACGGAGGAATTTTCAGAGAAGTCTTCTGGAGAAAATTTTCTTTCATTTCCTTCCAGCCATTGGACTATGTTTATCACTCTTTGAGATGATGTTTCTTCTGAGGAAATTATTCACCGGTGATGTTGTTGAATACCATGAGTGGTTATCAACAAGTTCACTACTTGCAGTCTGGATTTTCACTTCAATCTTTGCAAATTGTTCCAACTTTGAACACATATTTAACAACAAAATGCTCTGTTTATGGTGGATTGTGAGAGCAATATTTGGGATTTTCATTTTCGTGTCGACATATGCAGACTTTGAGCATTCATTATCAGTTCAGAGCATGCAAAAAGCAGGTACGTTAAGTTTTAATATCAATGGATGA

Coding sequence (CDS)

ATGAAAATTGGTGGAAGAAGACGGAGGAATTTTCAGAGAAGTCTTCTGGAGAAAATTTTCTTTCATTTCCTTCCAGCCATTGGACTATGTTTATCACTCTTTGAGATGATGTTTCTTCTGAGGAAATTATTCACCGGTGATGTTGTTGAATACCATGAGTGGTTATCAACAAGTTCACTACTTGCAGTCTGGATTTTCACTTCAATCTTTGCAAATTGTTCCAACTTTGAACACATATTTAACAACAAAATGCTCTGTTTATGGTGGATTGTGAGAGCAATATTTGGGATTTTCATTTTCGTGTCGACATATGCAGACTTTGAGCATTCATTATCAGTTCAGAGCATGCAAAAAGCAGGTACGTTAAGTTTTAATATCAATGGATGA

Protein sequence

MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSVQSMQKAGTLSFNING*
BLAST of Cucsa.177290 vs. TrEMBL
Match: A0A0A0LF13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710830 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.2e-36
Identity = 80/98 (81.63%), Postives = 83/98 (84.69%), Query Frame = 1

Query: 36  MMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIF 95
           MMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIF
Sbjct: 1   MMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIF 60

Query: 96  GIFIFVSTYADFEHSLSVQSMQKA------GTLSFNIN 128
           GIFIFVSTYADFE   +V S          GTL+F I+
Sbjct: 61  GIFIFVSTYADFEILKTVNSSFVVLLDVLFGTLAFIIS 98

BLAST of Cucsa.177290 vs. TrEMBL
Match: A0A072VNC5_MEDTR (Multidrug resistance-associated protein ABC domain protein OS=Medicago truncatula GN=MTR_2g105190 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.1e-19
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1

Query: 2   KIGGR--RRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSS 61
           KI GR  +R + Q SLLEK   +F+PAIG C S+ E+MFLL+K   G  V YH WL + S
Sbjct: 55  KISGRGTQRSDAQMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCS 114

Query: 62  LLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSV-QSMQK 121
            L VW    +F  C++   I  N++LC WWI+  I GIF  ++ +   E S  + +S+  
Sbjct: 115 ELLVWANIILFTKCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVV 174

Query: 122 AGTLSFNI 127
              LSF +
Sbjct: 175 LMNLSFGV 182

BLAST of Cucsa.177290 vs. TrEMBL
Match: A0A072VC82_MEDTR (Multidrug resistance-associated protein ABC domain protein OS=Medicago truncatula GN=MTR_2g105190 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.1e-19
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1

Query: 2   KIGGR--RRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSS 61
           KI GR  +R + Q SLLEK   +F+PAIG C S+ E+MFLL+K   G  V YH WL + S
Sbjct: 61  KISGRGTQRSDAQMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCS 120

Query: 62  LLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSV-QSMQK 121
            L VW    +F  C++   I  N++LC WWI+  I GIF  ++ +   E S  + +S+  
Sbjct: 121 ELLVWANIILFTKCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVV 180

Query: 122 AGTLSFNI 127
              LSF +
Sbjct: 181 LMNLSFGV 188

BLAST of Cucsa.177290 vs. TrEMBL
Match: G7ZYY5_MEDTR (ABC transporter C family member OS=Medicago truncatula GN=MTR_080s0031 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.1e-19
Identity = 53/128 (41.41%), Postives = 74/128 (57.81%), Query Frame = 1

Query: 2   KIGGR--RRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSS 61
           KI GR  +R + Q SLLEK   +F+PAIG C S+ E+MFLL+K   G  V YH WL + S
Sbjct: 61  KISGRGTQRSDAQMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCS 120

Query: 62  LLAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSV-QSMQK 121
            L VW    +F  C++   I  N++LC WWI+  I GIF  ++ +   E S  + +S+  
Sbjct: 121 ELLVWANIILFTKCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVV 180

Query: 122 AGTLSFNI 127
              LSF +
Sbjct: 181 LMNLSFGV 188

BLAST of Cucsa.177290 vs. TrEMBL
Match: A0A067DM07_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0004971mg PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 1

Query: 8   RRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFT 67
           R+N + +L+EK+F H LP +G CLS  +++ LL++   G+ V YHEWLS+ S   VW   
Sbjct: 49  RQNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTII 108

Query: 68  SIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSL 112
            + + C+ F  +F +++LC WWI++ + GI   + T++ FE  L
Sbjct: 109 VLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEQVL 152

BLAST of Cucsa.177290 vs. TAIR10
Match: AT2G07680.1 (AT2G07680.1 multidrug resistance-associated protein 11)

HSP 1 Score: 50.4 bits (119), Expect = 9.3e-07
Identity = 28/85 (32.94%), Postives = 46/85 (54.12%), Query Frame = 1

Query: 8   RRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSLLAVWIFT 67
           R N ++S +EK   +  PA+G CLS  +++ L+R     +V+     LS   +    I +
Sbjct: 48  RCNRRKSYIEKCLLYVTPALGACLSCVDLVLLVRTNRRREVILCFVPLSGFVMWIAVILS 107

Query: 68  SIFANCSNFEHIFNNKMLCLWWIVR 93
             FA C+   H+F +++LC WWI R
Sbjct: 108 LKFACCAC--HVFTSQILCFWWIFR 130

BLAST of Cucsa.177290 vs. NCBI nr
Match: gi|778682948|ref|XP_011651814.1| (PREDICTED: ABC transporter C family member 13 isoform X1 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1

Query: 1   MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 60
           MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL
Sbjct: 50  MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 109

Query: 61  LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSVQSMQKA- 120
           LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE   +V S     
Sbjct: 110 LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEILKTVNSSFVVL 169

Query: 121 -----GTLSFNIN 128
                GTL+F I+
Sbjct: 170 LDVLFGTLAFIIS 182

BLAST of Cucsa.177290 vs. NCBI nr
Match: gi|778682951|ref|XP_011651815.1| (PREDICTED: ABC transporter C family member 13 isoform X2 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1

Query: 1   MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 60
           MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL
Sbjct: 50  MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 109

Query: 61  LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSVQSMQKA- 120
           LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE   +V S     
Sbjct: 110 LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEILKTVNSSFVVL 169

Query: 121 -----GTLSFNIN 128
                GTL+F I+
Sbjct: 170 LDVLFGTLAFIIS 182

BLAST of Cucsa.177290 vs. NCBI nr
Match: gi|778682954|ref|XP_011651816.1| (PREDICTED: ABC transporter C family member 13 isoform X3 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1

Query: 1   MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 60
           MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL
Sbjct: 50  MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 109

Query: 61  LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSVQSMQKA- 120
           LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE   +V S     
Sbjct: 110 LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEILKTVNSSFVVL 169

Query: 121 -----GTLSFNIN 128
                GTL+F I+
Sbjct: 170 LDVLFGTLAFIIS 182

BLAST of Cucsa.177290 vs. NCBI nr
Match: gi|778682957|ref|XP_011651817.1| (PREDICTED: ABC transporter C family member 13 isoform X4 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 1

Query: 1   MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 60
           MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL
Sbjct: 50  MKIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSL 109

Query: 61  LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEHSLSVQSMQKA- 120
           LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE   +V S     
Sbjct: 110 LAVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFEILKTVNSSFVVL 169

Query: 121 -----GTLSFNIN 128
                GTL+F I+
Sbjct: 170 LDVLFGTLAFIIS 182

BLAST of Cucsa.177290 vs. NCBI nr
Match: gi|659130380|ref|XP_008465138.1| (PREDICTED: ABC transporter C family member 13 isoform X1 [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 6.2e-53
Identity = 102/107 (95.33%), Postives = 105/107 (98.13%), Query Frame = 1

Query: 2   KIGGRRRRNFQRSLLEKIFFHFLPAIGLCLSLFEMMFLLRKLFTGDVVEYHEWLSTSSLL 61
           KIGGRRRRNFQRSLLEKIF HFLPAIGLCLSLF+M+FLLRKLFTGDVVEYHEWLSTSSLL
Sbjct: 51  KIGGRRRRNFQRSLLEKIFLHFLPAIGLCLSLFDMVFLLRKLFTGDVVEYHEWLSTSSLL 110

Query: 62  AVWIFTSIFANCSNFEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE 109
           AVWIFT+IFANCSN EHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE
Sbjct: 111 AVWIFTTIFANCSNSEHIFNNKMLCLWWIVRAIFGIFIFVSTYADFE 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LF13_CUCSA8.2e-3681.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G710830 PE=4 SV=1[more]
A0A072VNC5_MEDTR9.1e-1941.41Multidrug resistance-associated protein ABC domain protein OS=Medicago truncatul... [more]
A0A072VC82_MEDTR9.1e-1941.41Multidrug resistance-associated protein ABC domain protein OS=Medicago truncatul... [more]
G7ZYY5_MEDTR9.1e-1941.41ABC transporter C family member OS=Medicago truncatula GN=MTR_080s0031 PE=4 SV=1[more]
A0A067DM07_CITSI2.2e-1738.46Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0004971mg PE=4 ... [more]
Match NameE-valueIdentityDescription
AT2G07680.19.3e-0732.94 multidrug resistance-associated protein 11[more]
Match NameE-valueIdentityDescription
gi|778682948|ref|XP_011651814.1|1.2e-5686.47PREDICTED: ABC transporter C family member 13 isoform X1 [Cucumis sativus][more]
gi|778682951|ref|XP_011651815.1|1.2e-5686.47PREDICTED: ABC transporter C family member 13 isoform X2 [Cucumis sativus][more]
gi|778682954|ref|XP_011651816.1|1.2e-5686.47PREDICTED: ABC transporter C family member 13 isoform X3 [Cucumis sativus][more]
gi|778682957|ref|XP_011651817.1|1.2e-5686.47PREDICTED: ABC transporter C family member 13 isoform X4 [Cucumis sativus][more]
gi|659130380|ref|XP_008465138.1|6.2e-5395.33PREDICTED: ABC transporter C family member 13 isoform X1 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.177290.1Cucsa.177290.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24223FAMILY NOT NAMEDcoord: 5..102
score: 3.0
NoneNo IPR availablePANTHERPTHR24223:SF232SERINE PROTEASE/ABC TRANSPORTER B FAMILY PROTEIN TAGB-RELATEDcoord: 5..102
score: 3.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None