Cucsa.172290 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.172290
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA and export factor binding protein, putative
Location	scaffold01196 : 180508 .. 183758 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAATCTCTCTCACCAAACCATTACACCGTCGAGGAATCTCCGAAACCCTAAATTCCCATTTtCTTGTCAGTCTTCTTTTTtCGATTACTCCTTCAACTTTGTTTtCTTtCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGTACGGTTTCGAGTTTCTCGATGTTTATGTCGATTTGTCTCGATTTAGCTCCTTGAATTCTGGATTTACGTTTtGTTTTGAACGTTTTTGATTTGTTAAACGTTAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGCATGTATAACTCTTGTGGATGAGTGGAACGAGAAGAGATGTTTCCTTTCTTGTTTCCTTTCTTGTTTGCTTTTGTTGACAGTCTTCGTGTTTGCAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGTATCTTACGAGGCCTGGCATAAGATACTGGTTCTTGAGCATTATCTATTTTTGGGCGAAGTTAAGAAATTCTCTGTCTATAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGTATAAACTCTATTATGTTTTTATGCCTAATCATTGAAATTAGAACACAGATTTGTTTATAATTGGATGGAATAGTTAACTACATCCGCATATTGTAACATAATATATCATGAATTGCAAGTATTACTGTTAAAGTTTTCAGATTGATATTAGCTGTTTTCAGATTCTTAAGTCTTATTTTAACTGTTAAAGTTTTCTTCCCCTTGTTTTGGTGACCTTTAATTCTGCTTATAAAGGATTTGTATTACGGCCTCTTCATTTGTTGTAGTAGTTAACTTGTGGTATATTTTAGGTGGAGTATGCTGTTGTATGTTTTCTCGGGAAAATTTGTCTCTGATGCAGACAATTATGGCATATGAATTCGTACTTGAATAACTTTTTTACAGATTTGTACAATGATACACGATAAAGATGGTTGGAGCCATTTTTTTTCATTTGTAGTGTGTCCCCTTTACTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGATTTTACATTGTTTTATATAATCAGTGGTACCGTCCTCTGAGCCATCCATATCATAGTGACATTCATTTTATAATGGAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGTTGGAATAAAACCCTGGCTGCTAATTATACATCAAATGAGTTGCGGTTCCCCATTGAGGTATGATGTCTATATTTTTGTGCTGCTAATTTCCATATTTTTCTCTCATGATTGTAACTGATGATGTTTCTCTTTTAATTTTTtCTCAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGCGAATCCGCTGAGCAGTTTGCCGCAACTCAGAGGCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCAACATGATCTCCTTCATTAGACCATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGGTAAAAACTTGGTCTCTTCGGAATCATATTCAATGCATTTACATTTGTTTGAATATTTGAAAACAACCTGCCTGTGGATTGAGACGAATATGTGTAGGGGTAAGGAGTAATGCCATTGGATTTTCATATGATTATTTTCACTGACATATAGTATCAATAGCGTAGATAGGTATGTTAATATCACCTTCTTCATATTTCCATACTCCCCTTCGATTTAAATTTGGACCAGTTTTGATGGTTTATTTGTAAAAGCTATAATGTGTATGTCAATATCAATTTTGACTGAATGTGGTTGTTTATATAGATAATGGGGGGGGGgGgATGTTTAATGTTCTAATTTATAGATTATTTCGTAGCTGGTATGAATAGCACAAATTAATATATATATGTATTTTTAATAGTATATTGCGATGTTAAATTTGAAATAGAATATCAGACTGAAAGTCTTTTGATTCCACAGTTAAATGTGGATGTATATATGTGATTGCACGATGGAATCAGATGGTGTCAGTGCTTGGAAGACCGCGACTCTAATTTGAGGAAGCCTTGTTTATTTATTTTGATCTTTTTATAATAGAACTATAAGAGAACAATGTTTTACCAAACGACCAAACCTCATGTAGGCCTTTGTGGTGAAGTTTAGGGTAC

mRNA sequence

GCCAAATCTCTCTCACCAAACCATTACACCGTCGAGGAATCTCCGAAACCCTAAATTCCCATTTTCTTGTCAGTCTTCTTTTTTCGATTACTCCTTCAACTTTGTTTTCTTTCAATTTTCTCTTCAACCATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAGTTGGTTCTTATATAGATGCTTTTGGTTCAACGAGCACCCTCTGTTCTCTGTATCACCACCATTGTCTAGACTTGGCAGAAAAGGGCTATAGTTTTTCCGTGAATTGGTTTGAATTTCTTTACAGCTTTTGGGCTTTCTATTGTTAGCTTTCGTATGACTTCAGCACGGTAATGTAATTGATGAACAGTAGTCACTGTGTACTCTGCTTTCATTCATTAAGTCCTTTCTGTTTCATTTAATGAGTTGGGAATCAAAGGATCTTCTATTTCCCTTAGCCTGATCACATCTGCAAGGGTGACATTGGTTGGAATAAAACCCTGGCTGCTAATTATACATCAAATGAGTTGCGGTTCCCCATTGAGGGAACCTCAACTCAATAAATCTAATATGTAAGGCATTGAACCGAGAGTTGGCTAACGTGCTAAAAGATGAACAGTCTTCATAGCTATGGGATCCGACTCGAGGCGAATGAAATTAAGAAATTTGCAAGATGAATAAGCCTTTGTTGGTGTATGGAATCTTTGCCTGCGTTTTATAGTAAAAATGCCTGATAATAGGTGAGATATCATTATTTTAAAGTAATTGTCCAAATGTATGCAACGTGGTGGTGGTATTCTACTGCTGTGCTTGTGGAGCGAATCCGCTGAGCAGTTTGCCGCAACTCAGAGGCCTTCATTTGAGGTACAATACCATCACTGTTGAGGGACAGTATCAAGTTTTTATACTGCTGAGTGCTAGTCTTGCAACATGATCTCCTTCATTAGACCATGGATAGCATCATGGCATTTTGACCCTGATCAACGAGCGTTAAATGTGGATGTATATATGTGATTGCACGATGGAATCAGATGGTGTCAGTGCTTGGAAGACCGCGACTCTAATTTGAGGAAGCCTTGTTTATTTATTTTGATCTTTTTATAATAGAACTATAAGAGAACAATGTTTTACCAAACGACCAAACCTCATGTAGGCCTTTGTGGTGAAGTTTAGGGTAC

Coding sequence (CDS)

ATGGCCGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAACAAGAAATCCAGATCCGGAAATTCTAGAGGTCGAGGAAGAGGTTCTGGACCTGGTCCCGTCCGTAGATTCCCCAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTTCTGGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTATCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTAGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCATGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCCCTAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCCGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Protein sequence

MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN*

Homology

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BLAST of Cucsa.172290 vs. Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-74
Identity = 158/251 (62.95%), Postives = 189/251 (75.30%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRRF-PNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of Cucsa.172290 vs. Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.8e-66
Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGR-----------GRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFLVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of Cucsa.172290 vs. Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3)

HSP 1 Score: 185.3 bits (469), Expect = 8.0e-46
Identity = 112/258 (43.41%), Postives = 146/258 (56.59%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGS-------------------GPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  RAA-------NR-TPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLD 120
            A        NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGK 180
           +GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGP 232
           PM I++V + I T    P  ++N    +        G GG     RG   GRGRG GR  
Sbjct: 181 PMNIQLVTSQIDTQR-RPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNS 240

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BLAST of Cucsa.172290 vs. Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 115/265 (43.40%), Postives = 148/265 (55.85%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGS-------------------GPGPVRRFPN 60
           MA  +DMSLDDIIK N+  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RAA--------NR-TPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGR------GGPPSRQRGHGFGRG 232
           +PM I++V + I T    P  +VN      G   R +G       GG     RG   GRG
Sbjct: 181 RPMNIQLVTSQIDTQR-RPAQSVN-----RGGMTRNRGSGGFGGGGGTRRGTRGGSRGRG 240

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BLAST of Cucsa.172290 vs. Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.2e-45
Identity = 116/261 (44.44%), Postives = 149/261 (57.09%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRG--------RGSGPG------------PVRRFP 60
           MA  +DMSLDDIIK N+  R  +  GRG        RG GPG            PVR  P
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  NRAA----NR-TPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYG 120
             A     NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF---DSGF----GAGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPM 180
           VS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+PM
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQ-----GRGGPPSRQRGHGFGRGRGRG 232
            I++V + I T    P  +V    N  G  R +      G GG     RG   GRGRG G
Sbjct: 181 NIQLVTSQIDTQR-RPAQSV----NRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAG 240

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BLAST of Cucsa.172290 vs. TrEMBL
Match: A0A0A0KBU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 3.5e-133
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cucsa.172290 vs. TrEMBL
Match: D7SKJ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04340 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.0e-95
Identity = 184/243 (75.72%), Postives = 199/243 (81.89%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGRGRGSGPGPVRRFPNRAANR-TPYSAPKAPETT 60
           M+  LDMSLDD+IKNNK+S  G N+RGRGRGSGPGP RR PNR ANR TPYS  KAPETT
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKAPETT 60

Query: 61  WQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHY 120
           WQHDMFAD ++ +  Q GR SAI+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+ IHY
Sbjct: 61  WQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 120

Query: 121 DKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPF 180
           D+SGRSKGTAEVVFSRR DAVAAVK+YNNVQLDGKPMKIEIVGTNI+TPA  P      F
Sbjct: 121 DRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTF 180

Query: 181 ENSNGAPRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238
            NSNG  R  QGR G   R R    G GFGRGRGRGRG  EKVSAEDLDADLEKYH+E+M
Sbjct: 181 GNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAM 240

[Close]

BLAST of Cucsa.172290 vs. TrEMBL
Match: A0A061H038_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.2e-95
Identity = 179/242 (73.97%), Postives = 204/242 (84.30%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRT-PYSAPKAPETTW 60
           M++ L+MSLDD+IK N+KS SGNSRGRGRGSGPGP RRFPNR ANR+ PY+A KAPETTW
Sbjct: 1   MSSALEMSLDDLIKRNRKSGSGNSRGRGRGSGPGPARRFPNRGANRSGPYTAAKAPETTW 60

Query: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120
           QHDM++D  + F  Q GRASAI+TGTKLYISNLDYGVSN+DIKELF+EVGD+KR  IHYD
Sbjct: 61  QHDMYSDKGAAFQGQAGRASAIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRFTIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180
           +SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGKPMKIEIVGTN++TP   P+A    F 
Sbjct: 121 RSGRSKGTAEVVFSRRTDAMAAVKRYNNVQLDGKPMKIEIVGTNVATPG-APSAGNGAFG 180

Query: 181 NSNGAPRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238
           NSNGAPR   GRGG   +QR    G GFGRGRGRG+G  EKVSAEDLDA+LEKYH+E+MQ
Sbjct: 181 NSNGAPRGGHGRGGGFGKQRGGGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSEAMQ 240

[Close]

BLAST of Cucsa.172290 vs. TrEMBL
Match: A0A067LAK2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 3.2e-94
Identity = 185/249 (74.30%), Postives = 201/249 (80.72%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRT-PYSAPKAPETTW 60
           M++ LDMSLDDIIK+NKK  SGNSRGRGR SGPGP RRF NR ANR  PYS  KAPETTW
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRASGPGPTRRFTNRVANRAAPYSTAKAPETTW 60

Query: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120
           QHDMF D   G+  QGGRASAI+TGTKLYISNL+YGVSNEDIKELFSEVGD+KR+ IHYD
Sbjct: 61  QHDMFTDQGMGYAGQGGRASAIETGTKLYISNLEYGVSNEDIKELFSEVGDLKRYTIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180
           +SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGKPMKIEIVGTNI+TPA  P+AA   F 
Sbjct: 121 RSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIATPA-APSAANGTFG 180

Query: 181 NSNGAPRRQQGRGGPPSRQR-----GHGFGRGRGRGR------GPSEKVSAEDLDADLEK 238
           +SN   R  QGRGG   RQR     G GFGRGRGRGR      G  EKVSAEDLDADLEK
Sbjct: 181 SSNAVSRGGQGRGGAVGRQRGGSGGGRGFGRGRGRGRGGGGGGGRGEKVSAEDLDADLEK 240

[Close]

BLAST of Cucsa.172290 vs. TrEMBL
Match: A0A0D2P0Z5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G135200 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 5.5e-94
Identity = 178/242 (73.55%), Postives = 203/242 (83.88%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRT-PYSAPKAPETTW 60
           M++ L+MSLDD+IK N+KS SGN RGRGRGSGPGP RRFPNR ANR+ PY+A  APETTW
Sbjct: 1   MSSALEMSLDDLIKRNRKSGSGNPRGRGRGSGPGPARRFPNRGANRSAPYTAATAPETTW 60

Query: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120
           QHDM++D  + F  Q GRA+AI+TGTKLY+SNLDYGVSN+DIKELFSEVGD+KR+ IHYD
Sbjct: 61  QHDMYSDKGAAFQGQAGRAAAIETGTKLYVSNLDYGVSNDDIKELFSEVGDLKRYAIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180
            +GRSKGTAEVVFSR+ DA+AAVK+YNNVQLDGKPMKIEIVGTNI+TPA  PT A   F 
Sbjct: 121 WTGRSKGTAEVVFSRKADAMAAVKRYNNVQLDGKPMKIEIVGTNIATPA-APTVANVAFG 180

Query: 181 NSNGAPRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238
           +SNGAPR  +GRGG   RQR    G GFGRGRG+GRG  EKVSAEDLDADLEKYH E+MQ
Sbjct: 181 SSNGAPRGGRGRGGGFRRQRGVAGGRGFGRGRGQGRGRGEKVSAEDLDADLEKYHTEAMQ 240

[Close]

BLAST of Cucsa.172290 vs. TAIR10
Match: AT5G59950.5 (AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-75
Identity = 158/252 (62.70%), Postives = 189/252 (75.00%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSR--SGNSRGRGRGSGPGPVRRF-PNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  N+KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP--RRQQGRGGPPSRQRG--------HGFGRGRGRGRGPSEKVSAEDLDAD 238
           N   NSNGAP  R  QGRGG   +QRG         G GRGR  G+GP+EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

[Close]

BLAST of Cucsa.172290 vs. TAIR10
Match: AT5G02530.1 (AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-67
Identity = 159/290 (54.83%), Postives = 181/290 (62.41%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGR-----------GRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+N+K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFLVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Cucsa.172290 vs. TAIR10
Match: AT1G66260.1 (AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 175.6 bits (444), Expect = 3.5e-44
Identity = 122/305 (40.00%), Postives = 161/305 (52.79%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSR----------GRGRGS---------GPGPVRRFPN 60
           M+  L+M+LD+I+K +K  RS  +R          GRGRG          G GPVRR P 
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGP- 60

Query: 61  RAANRTPYS-------APKAPETTWQH--DMFADPSSGFLVQGGRASAIQTGTKLYISNL 120
            A N  P S       A +     WQ+  D++ +      V G     ++ GT +YI+NL
Sbjct: 61  LAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSG-----VEVGTTVYITNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D GV+NEDI+EL++E+G++KR+ IHYDK+GR  G+AEVV+ RR DA+ A++KYNNV LDG
Sbjct: 121 DQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQ-------------QGRGGPPSRQR 238
           +PMK+EI+G N  +    P AA       NG  +R              +GRG  PS +R
Sbjct: 181 RPMKLEILGGNTES---APVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGSGPSGRR 240

[Close]

BLAST of Cucsa.172290 vs. TAIR10
Match: AT5G37720.1 (AT5G37720.1 ALWAYS EARLY 4)

HSP 1 Score: 175.6 bits (444), Expect = 3.5e-44
Identity = 122/293 (41.64%), Postives = 156/293 (53.24%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGN---SRGRGRGSG-----PGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  K +RSG    SRGRGRG G      GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++   AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDG-----LRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST 180
           E+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAVGPTAAVNPFENSNGAPRR----QQGRGGPPSRQRGHGFGRGR--------------- 235
            A             NG  +R    QQG GG   R RG   GRG                
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQG-GGGRGRVRGGRGGRGPAPTVSRRLPIHNQQG 240

[Close]

BLAST of Cucsa.172290 vs. TAIR10
Match: AT2G37220.1 (AT2G37220.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-09
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1


Query: 68  SSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK-SGRSKG 127
           SSG    GG  S   +G ++Y+ NL +GV +  ++ LFSE G +    + YD+ SGRSKG
Sbjct: 187 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG 246

Query: 128 TAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 158
              V +    +   A+K  +   LDG+ +++
Sbjct: 247 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277

[Close]

BLAST of Cucsa.172290 vs. NCBI nr
Match: gi|449450684|ref|XP_004143092.1| (PREDICTED: THO complex subunit 4A-like [Cucumis sativus])

HSP 1 Score: 482.3 bits (1240), Expect = 5.0e-133
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cucsa.172290 vs. NCBI nr
Match: gi|659095077|ref|XP_008448383.1| (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 473.8 bits (1218), Expect = 1.8e-130
Identity = 233/237 (98.31%), Postives = 235/237 (99.16%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGGPPSRQRG GFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Cucsa.172290 vs. NCBI nr
Match: gi|659095085|ref|XP_008448388.1| (PREDICTED: THO complex subunit 4A-like isoform X2 [Cucumis melo])

HSP 1 Score: 371.7 bits (953), Expect = 9.6e-100
Identity = 183/186 (98.39%), Postives = 185/186 (99.46%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPR 187
           SNGAPR
Sbjct: 181 SNGAPR 186

[Close]

BLAST of Cucsa.172290 vs. NCBI nr
Match: gi|225435024|ref|XP_002284215.1| (PREDICTED: THO complex subunit 4A [Vitis vinifera])

HSP 1 Score: 357.8 bits (917), Expect = 1.4e-95
Identity = 184/243 (75.72%), Postives = 199/243 (81.89%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSG-NSRGRGRGSGPGPVRRFPNRAANR-TPYSAPKAPETT 60
           M+  LDMSLDD+IKNNK+S  G N+RGRGRGSGPGP RR PNR ANR TPYS  KAPETT
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPGPARRLPNRGANRITPYSVSKAPETT 60

Query: 61  WQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHY 120
           WQHDMFAD ++ +  Q GR SAI+TGTKLYISNLDYGVSNEDIKELFSEVGD+KR+ IHY
Sbjct: 61  WQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHY 120

Query: 121 DKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPF 180
           D+SGRSKGTAEVVFSRR DAVAAVK+YNNVQLDGKPMKIEIVGTNI+TPA  P      F
Sbjct: 121 DRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVTNGTF 180

Query: 181 ENSNGAPRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESM 238
            NSNG  R  QGR G   R R    G GFGRGRGRGRG  EKVSAEDLDADLEKYH+E+M
Sbjct: 181 GNSNGGLRSAQGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAM 240

[Close]

BLAST of Cucsa.172290 vs. NCBI nr
Match: gi|590589573|ref|XP_007016490.1| (RNA-binding family protein [Theobroma cacao])

HSP 1 Score: 356.7 bits (914), Expect = 3.2e-95
Identity = 179/242 (73.97%), Postives = 204/242 (84.30%), Query Frame = 1


Query: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRT-PYSAPKAPETTW 60
           M++ L+MSLDD+IK N+KS SGNSRGRGRGSGPGP RRFPNR ANR+ PY+A KAPETTW
Sbjct: 1   MSSALEMSLDDLIKRNRKSGSGNSRGRGRGSGPGPARRFPNRGANRSGPYTAAKAPETTW 60

Query: 61  QHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYD 120
           QHDM++D  + F  Q GRASAI+TGTKLYISNLDYGVSN+DIKELF+EVGD+KR  IHYD
Sbjct: 61  QHDMYSDKGAAFQGQAGRASAIETGTKLYISNLDYGVSNDDIKELFAEVGDLKRFTIHYD 120

Query: 121 KSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFE 180
           +SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGKPMKIEIVGTN++TP   P+A    F 
Sbjct: 121 RSGRSKGTAEVVFSRRTDAMAAVKRYNNVQLDGKPMKIEIVGTNVATPG-APSAGNGAFG 180

Query: 181 NSNGAPRRQQGRGGPPSRQR----GHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQ 238
           NSNGAPR   GRGG   +QR    G GFGRGRGRG+G  EKVSAEDLDA+LEKYH+E+MQ
Sbjct: 181 NSNGAPRGGHGRGGGFGKQRGGGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSEAMQ 240

The following BLAST results are available for this feature:

BLAST of Cucsa.172290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THO4A_ARATH	1.8e-74	62.95	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	[more]
THO4B_ARATH	1.8e-66	54.83	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]
THOC4_MOUSE	8.0e-46	43.41	THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3	[more]
THOC4_BOVIN	1.4e-45	43.40	THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1	[more]
THOC4_TAEGU	5.2e-45	44.44	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	[more]

BLAST of Cucsa.172290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU2_CUCSA	3.5e-133	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G193610 PE=4 SV=1	[more]
D7SKJ4_VITVI	1.0e-95	75.72	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04340 PE=4 SV=...	[more]
A0A061H038_THECC	2.2e-95	73.97	RNA-binding family protein OS=Theobroma cacao GN=TCM_041883 PE=4 SV=1	[more]
A0A067LAK2_JATCU	3.2e-94	74.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1	[more]
A0A0D2P0Z5_GOSRA	5.5e-94	73.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G135200 PE=4 SV=1	[more]

BLAST of Cucsa.172290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59950.5	1.3e-75	62.70	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	1.0e-67	54.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.1	3.5e-44	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G37720.1	3.5e-44	41.64	ALWAYS EARLY 4	[more]
AT2G37220.1	8.3e-09	34.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cucsa.172290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450684\|ref\|XP_004143092.1\|	5.0e-133	100.00	PREDICTED: THO complex subunit 4A-like [Cucumis sativus]	[more]
gi\|659095077\|ref\|XP_008448383.1\|	1.8e-130	98.31	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo]	[more]
gi\|659095085\|ref\|XP_008448388.1\|	9.6e-100	98.39	PREDICTED: THO complex subunit 4A-like isoform X2 [Cucumis melo]	[more]
gi\|225435024\|ref\|XP_002284215.1\|	1.4e-95	75.72	PREDICTED: THO complex subunit 4A [Vitis vinifera]	[more]
gi\|590589573\|ref\|XP_007016490.1\|	3.2e-95	73.97	RNA-binding family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR025715	FoP_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.172290.1	Cucsa.172290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 score: 2.1
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 score: 9.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 85..162 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 195..209 score: 4.0E-20coord: 76..163 score: 4.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 20..159 score: 2.31
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 176..232 score: 5.7
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 161..237 score: 5.2
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..237 score: 7.8E
None	No IPR available	PANTHER	PTHR19965:SF29	SUBFAMILY NOT NAMED	coord: 1..237 score: 7.8E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.172290	Cla013288	Watermelon (97103) v1	cgywmB328
Cucsa.172290	Csa6G193610	Cucumber (Chinese Long) v2	cgycuB262
Cucsa.172290	MELO3C013685	Melon (DHL92) v3.5.1	cgymeB306
Cucsa.172290	ClCG02G020360	Watermelon (Charleston Gray)	cgywcgB306
Cucsa.172290	CSPI06G14690	Wild cucumber (PI 183967)	cgycpiB270
Cucsa.172290	CmaCh02G008200	Cucurbita maxima (Rimu)	cgycmaB0487
Cucsa.172290	CmoCh02G008260	Cucurbita moschata (Rifu)	cgycmoB0490
Cucsa.172290	Lsi10G013570	Bottle gourd (USVL1VR-Ls)	cgylsiB286
Cucsa.172290	Cp4.1LG05g08900	Cucurbita pepo (Zucchini)	cgycpeB0475
Cucsa.172290	MELO3C013685.2	Melon (DHL92) v3.6.1	cgymedB298
Cucsa.172290	CsaV3_6G017140	Cucumber (Chinese Long) v3	cgycucB275
Cucsa.172290	Cla97C02G046320	Watermelon (97103) v2	cgywmbB310
Cucsa.172290	Bhi10G000547	Wax gourd	cgywgoB354
Cucsa.172290	Carg20280	Silver-seed gourd	carcgyB0359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.172290	Cucurbita maxima (Rimu)	cgycmaB0486
Cucsa.172290	Cucurbita pepo (Zucchini)	cgycpeB0473
Cucsa.172290	Silver-seed gourd	carcgyB0397