Cucsa.172270 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.172270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPolyprotein
Locationscaffold01196 : 174190 .. 175134 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTGCAAAACGAGTGAGCAAGACCCATGAAGAACGGTTGGTGGGGATTGAAGAGCAGATGCTCCACCTTATGGAAATTCCTAATTCCATCCGATTTATGGAAGAACGAATTGAGGAAGTTTCCGAGAGAGCCGAAGTTGTTGACGCGGTGTCCGGTCGCCTGAACGGATTACCCATACAAGATTTGTTGGCTAGAGTTGACACGTTAGAGTCACAAATCCAGAGAATTGAAAATGTTCCCTACGAGCGTGGGGACAATTCATCGGGCTCTATTGCCCGAATGGAGGAGCGAGTTATGGAGAAGATAACTCTTAGAAAGACATACTGGAAATGATAAACGGCATGTCAGAGGACTTTCGAGCCACCCTGGATGTCGTTAGAAATGAAATCGTAGAGGTGAACATGAAGGTGAGCCTTACGATGCGAGCATTGGCCAATCAAGCTCCGGGTTGAGGAGCAATTACAATTGGCAAGATAAAGATCCTGAAACCCAACCCCTTTTGTGGGGCAAGGGATGCAAAGGCATTGGAAAACTTTATCTTCAATATTGAGCAGTACTTTAAAGCGACAAACACCGTGGCAGAGGAAGCCAAAGTGTCGTTGGCGACCCTGCATCTATCTGAGGATGCAAAGTTGTGGTGGAGGTCCCAATATATTGACATTCAGGAAGGGCGTTACATAATAGACACGTGGGACAGTTTGAAGAGAGAACTCCGTTCACAGTTTTTTTCTGGAAAATGTCGAGATTCTAGCTCGATGAAAACTGCGGGAATTAAAGCATACTGGAACCACTCGGGAGTATGTGAAGCAGTTTGCGGGGCTGATGTTGAACATATCCGACATGACTGAAAAGGACAAGATCTTTAGTTTTGTTGAAGGACTGAAGCCATGGGCAAGGACTAAGCTATACGAGCAGAAGGTCCAAGACCTCGTATCAGCC

mRNA sequence

atgtcgactgcaaaacgagtgagcaagacccatgaagaacggttggtggggattgaagagcagatgctccaccttatggaaattcctaattccatccgatttatggaagaacgaattgaggaagtttccgagagagccgaagttgttgacataaagatCCTGAaacccaaccccttttgtggggcaagggatgcaaaggcattggaaaactttatcttcaatattgagcagtactttaaagcgacaaacaccgtggcagaggaagccaaagtgtcgttggcgaccctgcatctatctgaggatgcaaagttgtggtggaggtcccaatatattgacattcaggaagggcgttacataatagacacgtgggacagtttgaagagagaactccgttcacagtttttttctggaaaatgtcgagattctagctcgatgaaaactgcgggaattaaagcatactggaaccactcgggagtatgtgaagcagtttgcggggctgatgttgaacatatccgacatgactgaaaaggacaagatctttagttttgttgaaggactgaagccatgggcaaggactaagctatacgagcagaaggtccaagacctcgtatcagcc

Coding sequence (CDS)

ATGTCGACTGCAAAACGAGTGAGCAAGACCCATGAAGAACGGTTGGTGGGGATTGAAGAGCAGATGCTCCACCTTATGGAAATTCCTAATTCCATCCGATTTATGGAAGAACGAATTGAGGAAGTTTCCGAGAGAGCCGAAGTTGTTGACATAAAGATCCTGAAACCCAACCCCTTTTGTGGGGCAAGGGATGCAAAGGCATTGGAAAACTTTATCTTCAATATTGAGCAGTACTTTAAAGCGACAAACACCGTGGCAGAGGAAGCCAAAGTGTCGTTGGCGACCCTGCATCTATCTGAGGATGCAAAGTTGTGGTGGAGGTCCCAATATATTGACATTCAGGAAGGGCGTTACATAATAGACACGTGGGACAGTTTGAAGAGAGAACTCCGTTCACAGTTTTTTTCTGGAAAATGTCGAGATTCTAGCTCGATGAAAACTGCGGGAATTAAAGCATACTGGAACCACTCGGGAGTATGTGAAGCAGTTTGCGGGGCTGATGTTGAACATATCCGACATGACTGA

Protein sequence

MSTAKRVSKTHEERLVGIEEQMLHLMEIPNSIRFMEERIEEVSERAEVVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWRSQYIDIQEGRYIIDTWDSLKRELRSQFFSGKCRDSSSMKTAGIKAYWNHSGVCEAVCGADVEHIRHD*
Homology
[Close]
BLAST of Cucsa.172270 vs. TrEMBL
Match: A5BDH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 44/106 (41.51%), Postives = 71/106 (66.98%), Query Frame = 1 

Query: 35  MEERIEEVSERAEVVDI-----KILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEA 94
           M+ R +E+ +   +  I     ++ KP+ F G RDAK L+NF++++E+YF+A   + E  
Sbjct: 136 MDARDQEIRQELAIYKIAAPRVEVPKPHTFSGKRDAKELDNFLWHMERYFEAIALMDEAT 195

Query: 95  KVSLATLHLSEDAKLWWRSQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           KV +ATL+L+++A LWWR  + DI+ G   IDTWD+ KRE++ QF+
Sbjct: 196 KVRIATLYLTDNATLWWRRWFADIERGTCTIDTWDAFKREIKRQFY 241

[Close]
BLAST of Cucsa.172270 vs. TrEMBL
Match: A5C1Y3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005867 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-17
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 1 

Query: 47  EVVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWW 106
           E + +++ KP  F G RDAK L+NF++++E+YF+A   + E  KV  ATL+L+++A LWW
Sbjct: 124 EALRVEVPKPYAFSGKRDAKELDNFLWHMERYFEAIALMDEATKVRTATLYLTDNATLWW 183

Query: 107 RSQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           R ++ DI++G   IDTWD+ KRE++ QF+
Sbjct: 184 RRRFADIEKGTCTIDTWDAFKREIKRQFY 212

[Close]
BLAST of Cucsa.172270 vs. TrEMBL
Match: A5AYX1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 47  EVVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWW 106
           E   +++ KP+ F G RDAK L+NF++++E+YF+A     E AKV   TL+L+++A LWW
Sbjct: 5   EAPRVEVPKPHTFSGKRDAKELDNFLWHMERYFEAIALTDEAAKVRTVTLYLTDNATLWW 64

Query: 107 RSQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           R ++ DI+ G   IDTWD+ KRE++ QF+
Sbjct: 65  RRRFADIERGTCTIDTWDAFKREIKRQFY 93

[Close]
BLAST of Cucsa.172270 vs. TrEMBL
Match: A5B3Z0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043382 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17
Identity = 42/89 (47.19%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 47  EVVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWW 106
           E   +++ KP+ F G RDAK L+NF++++E+YF+A     E AKV  ATL+L++ A LWW
Sbjct: 146 EASRVEVPKPHRFSGNRDAKELDNFLWHMERYFEAIALTNEAAKVRTATLYLTDTATLWW 205

Query: 107 RSQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           R ++ DI+ G   IDTWD+ KRE++ QF+
Sbjct: 206 RRRFADIERGTCTIDTWDAFKREIKRQFY 234

[Close]
BLAST of Cucsa.172270 vs. TrEMBL
Match: A5AZ22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008583 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 1 

Query: 47  EVVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWW 106
           E   +K+ KP+ F G RD K L+NF++++E+YF+A     E  KV  ATL+L+++A LWW
Sbjct: 139 EAPRVKVSKPHMFSGKRDTKDLDNFLWHMERYFEAITLTDEATKVRTATLYLTDNATLWW 198

Query: 107 RSQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           R ++ DI++   IIDTWD+ KRE++ QF+
Sbjct: 199 RRRFADIEKETCIIDTWDAFKREIQRQFY 227

[Close]
BLAST of Cucsa.172270 vs. NCBI nr
Match: gi|659121588|ref|XP_008460733.1| (PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 48  VVDIKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWR 107
           V  +K+ KP PF G RDAKALENF F++EQYFK TNTV EEAKV+LAT++L EDAKLWWR
Sbjct: 13  VTKVKVPKPKPFYGVRDAKALENFTFDLEQYFKVTNTVTEEAKVTLATMYLCEDAKLWWR 72

Query: 108 SQYIDIQEGRYIIDTWDSLKRELRSQFF 136
           S+Y+DIQEGR  IDTWD LK+EL S+FF
Sbjct: 73  SRYMDIQEGRCTIDTWDVLKKELHSEFF 100

[Close]
BLAST of Cucsa.172270 vs. NCBI nr
Match: gi|1009161113|ref|XP_015898721.1| (PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba])

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-21
Identity = 56/135 (41.48%), Postives = 90/135 (66.67%), Query Frame = 1 

Query: 1   MSTAKRVSKTHEERLVGIEEQMLHL-MEIPNSIRFMEERIEEVSERAEVVDIKILKPNPF 60
           MST   +++  +  +  ++ +M  +  ++  ++R +E R   V    +   +K+ +P  +
Sbjct: 78  MSTVNELTEEFQATVEALKIEMGQINTKLAITMRAVENR-PAVPMGGDYGRMKVPEPRAY 137

Query: 61  CGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWRSQYIDIQEGRYI 120
            GARDAK LENF+F++EQYF+A    +EE KV++AT++L+ DAKLWWRS+Y DI   R I
Sbjct: 138 GGARDAKELENFLFDMEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKYEDIMNNRCI 197

Query: 121 IDTWDSLKRELRSQF 135
           IDTWD L++EL++QF
Sbjct: 198 IDTWDQLQKELKNQF 211

[Close]
BLAST of Cucsa.172270 vs. NCBI nr
Match: gi|1009181571|ref|XP_015872243.1| (PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba])

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 51  IKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWRSQY 110
           +K+ +P  + GARDAK LENF+F++EQYF+A    +EE KV++AT++L+ DAKLWWRS+Y
Sbjct: 30  MKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKY 89

Query: 111 IDIQEGRYIIDTWDSLKRELRSQF 135
            DI+  R IIDTWD L++EL++QF
Sbjct: 90  EDIKNNRCIIDTWDQLQKELKNQF 113

[Close]
BLAST of Cucsa.172270 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 48/84 (57.14%), Postives = 68/84 (80.95%), Query Frame = 1 

Query: 51  IKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWRSQY 110
           +K+ +P  + GARDAK LENF+F++EQYF+A    +EE KV++AT++L+ DAKLWWRS+Y
Sbjct: 317 MKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKY 376

Query: 111 IDIQEGRYIIDTWDSLKRELRSQF 135
            DI+  R IIDTWD L++EL++QF
Sbjct: 377 EDIKNNRCIIDTWDQLQKELKNQF 400

[Close]
BLAST of Cucsa.172270 vs. NCBI nr
Match: gi|1009175511|ref|XP_015868924.1| (PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba])

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 1 

Query: 85  VAEEA-KVSLATLHLSEDAKLWWRSQYIDIQEGRYIIDTWDSLKRELRSQFFSGKCRDSS 144
           +A++A K+  ATL+LS+ A LWWR ++ DI+ G     T+D  K++L+ QF+     D +
Sbjct: 3   IADDASKIRTATLYLSDTAMLWWRRRHSDIERGTCTFHTFDDFKKDLKRQFYPENAEDEA 62

Query: 145 SMKTAGIK 152
             +   +K
Sbjct: 63  RSRLRRLK 70


HSP 2 Score: 109.4 bits (272), Expect = 6.5e-21
Identity = 48/84 (57.14%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 51  IKILKPNPFCGARDAKALENFIFNIEQYFKATNTVAEEAKVSLATLHLSEDAKLWWRSQY 110
           +K+ +P  + GARDAK LENF+F++EQYF+A    +EE KV++AT++L+ DAKLWWRS+Y
Sbjct: 30  MKVPEPRAYGGARDAKELENFLFDMEQYFRAIKPDSEETKVTMATMYLTNDAKLWWRSKY 89

Query: 111 IDIQEGRYIIDTWDSLKRELRSQF 135
            DI   R IIDTWD L++EL++QF
Sbjct: 90  EDIMNNRCIIDTWDQLQKELKNQF 113

The following BLAST results are available for this feature:
BLAST of Cucsa.172270 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BDH9_VITVI3.0e-1741.51Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1[more]
A5C1Y3_VITVI4.0e-1746.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005867 PE=4 SV=1[more]
A5AYX1_VITVI6.8e-1746.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040475 PE=4 SV=1[more]
A5B3Z0_VITVI6.8e-1747.19Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043382 PE=4 SV=1[more]
A5AZ22_VITVI1.2e-1646.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008583 PE=4 SV=1[more]
BLAST of Cucsa.172270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121588|ref|XP_008460733.1|2.2e-2971.59PREDICTED: uncharacterized protein LOC103499495, partial [Cucumis melo][more]
gi|1009161113|ref|XP_015898721.1|3.8e-2141.48PREDICTED: uncharacterized protein LOC107432159 [Ziziphus jujuba][more]
gi|1009181571|ref|XP_015872243.1|5.0e-2157.14PREDICTED: uncharacterized protein LOC107409324, partial [Ziziphus jujuba][more]
gi|1009175511|ref|XP_015868924.1|5.0e-2157.14PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
gi|1009175511|ref|XP_015868924.1|4.2e-0435.29PREDICTED: uncharacterized protein LOC107406328 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.172270.1Cucsa.172270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 32..52
scor

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.172270Cucumber (Chinese Long) v3cgycucB275
Cucsa.172270Wild cucumber (PI 183967)cgycpiB270
Cucsa.172270Cucumber (Chinese Long) v2cgycuB262