Cucsa.169930 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.169930
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	scaffold01174 : 173867 .. 175317 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAAAAACTGCCACCAATGCTCGCTTTTTCTTCTTCTTCTCTTCTTCTCTTTCCCATAACTTCGACCATTATCTCCCCTCCTTCGCTCCACCTCGAACcTTTTtCTCGTTTCACTCCACCCCTTCGTACGGATAATGTCGCCGGAAGAATCTCCAGAAATGGTACACAGTTTCCGTTCTCATTTTGCACTACTGCGTCCACTGAGCCGGTCACCAGTGACGCcTCCATTGCATTGTCGTCCACATCATTGGATAAGGACGACGATGATCCGGAAAAGAATATTAAGGATGCGGCTGACATGCTCGATATTAGGGTTGGGCGAATCATTAAGGCTTGGAGACATCTGGAGGCTGACACTCTTTATGTTGAAGAAGTTGATGTTGGTGAACCCGAGCCGAGGCTTATTTGCAGTGGCCTTGTTAAATATATCCCTCTCGATCAACTTCTGGTACTTCATTTTTCCTTCTTATGATCAATACATTTAACTTCTGGTTCATTTATATAAGAAAAATATTTGACTGGACATGCTTAAAACTTGAACTCTACCCATTTTTTATTTTACTGTTTTTCTTTTCATGGCTTATAGATCGATTCCTTTACCAATTGGAGTCTTTTCCTTTTCCTCCTATCTTGTCCCTGGTGTTTTTGCTGTATAAAGTGGAAACCTCAGGAACCAACTCAGATTGCAGTTTTAGAGACTATTAAAGGTAGAGGAACAATGTAGGACTACTTGGTCTTGTGAATCTTTTATTAAAATGATATTGTGTTTCATACAAGAGTGGAAGACTTTCCTATTTATAGAAACAAGTCGGGTGAAAAGAAAATTAACCTAGAATGCTACCCAATTAACCTTCATTCTTCTTATAATCAAGAATTGAGAGAAAGTATATTTCTTATTCATCTAGAGTCAGAGTAAAGTTACACACATATATAtaTATAACAAATAAACCCTAATTGTATGTACAATTATGATAAAGGACATATATTATAAATATATATCATAACACTCTCCATCAAGCTGAAGCAAATATGTCGATCATGCCCAATTTATTTTCGTTGAGACAAATAAATACCTTTCTTGCTTCTATCACTTAAATGCTCAAAAAATATTTCAATTGGtCGAAATCTTTCGTATTAAACTGATTCTGAAGGAAATTTTTGAGAGACGAAATACCCGATGCATCATTTCCAGTAATAACAATATATCAACATATACAACTTGTAAAATTATAACATTTTCAGATTGGCGATAGAAAGCAGAATGATCAGATTTACTCTTCTGCATACCAAAGCATACAAGAGCTTGACTAAACTTACCAAACCACGCACATGGACTCTATTTCAAACCATACAAAGATTTTCGAAGGCGACATACTTTCTCACTCTCCTCTtGAGCAACAAACCCAAATGGTTGTTCCATATAAACTTCCTCTTGAAGACCtCCAT

mRNA sequence

ATGTTGCAAAAACTGCCACCAATGCTCGCTTTTTCTTCTTCTTCTCTTCTTCTCTTTCCCATAACTTCGACCATTATCTCCCCTCCTTCGCTCCACCTCGAACCTTTTTCTCGTTTCACTCCACCCCTTCGTACGGATAATGTCGCCGGAAGAATCTCCAGAAATGGTACACAGTTTCCGTTCTCATTTTGCACTACTGCGTCCACTGAGCCGGTCACCAGTGACGCCTCCATTGCATTGTCGTCCACATCATTGGATAAGGACGACGATGATCCGGAAAAGAATATTAAGGATGCGGCTGACATGCTCGATATTAGGGTTGGGCGAATCATTAAGGCTTGGAGACATCTGGAGGCTGACACTCTTTATGTTGAAGAAGTTGATGTTGGTGAACCCGAGCCGAGGCTTATTTGCAGTGGCCTTGTTAAATATATCCCTCTCGATCAACTTCTGATCGATTCCTTTACCAATTGGAGTCTTTTCCTTTTCCTCCTATCTTGTCCCTGGTGTTTTTGCTGTATAAAGTGGAAACCTCAGGAACCAACTCAGATTGCAGTTTTAGAGACTATTAAAGGTAGAGGAACAATattggcgatagaaagcagaatgatcagatttactcttctgcataccaaagcatacaagagcttgactaaacttaccaaaccacgcacatggactctatttcaaaccatacaaagattttcgaaggcgacatactttctcactctcctcttgagcaacaaacccaaatggttgttccatataaacttcctcttgaagacctccat

Coding sequence (CDS)

ATGTTGCAAAAACTGCCACCAATGCTCGCTTTTTCTTCTTCTTCTCTTCTTCTCTTTCCCATAACTTCGACCATTATCTCCCCTCCTTCGCTCCACCTCGAACcTTTTtCTCGTTTCACTCCACCCCTTCGTACGGATAATGTCGCCGGAAGAATCTCCAGAAATGGTACACAGTTTCCGTTCTCATTTTGCACTACTGCGTCCACTGAGCCGGTCACCAGTGACGCcTCCATTGCATTGTCGTCCACATCATTGGATAAGGACGACGATGATCCGGAAAAGAATATTAAGGATGCGGCTGACATGCTCGATATTAGGGTTGGGCGAATCATTAAGGCTTGGAGACATCTGGAGGCTGACACTCTTTATGTTGAAGAAGTTGATGTTGGTGAACCCGAGCCGAGGCTTATTTGCAGTGGCCTTGTTAAATATATCCCTCTCGATCAACTTCTGATCGATTCCTTTACCAATTGGAGTCTTTTCCTTTTCCTCCTATCTTGTCCCTGGTGTTTTTGCTGTATAAAGTGGAAACCTCAGGAACCAACTCAGATTGCAGTTTTAGAGACTATTAAAGGTAGAGGAACAATATTGGCGATAGAAAGCAGAATGATCAGATTTACTCTTCTGCATACCAAAGCATACAAGAGCTTGACTAAACTTACCAAACCACGCACATGGACTCTATTTCAAACCATACAAAGATTTTCGAAGGCGACATACTTTCTCACTCTCCTCTtGAGCAACAAACCCAAATGGTTGTTCCATATAAACTTCCTCTTGAAGACCtCCAT

Protein sequence

MLQKLPPMLAFSSSSLLLFPITSTIISPPSLHLEPFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTEPVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLLIDSFTNWSLFLFLLSCPWCFCCIKWKPQEPTQIAVLETIKGRGTILAIESRMIRFTLLHTKAYKSLTKLTKPRTWTLFQTIQRFSKATYFLTLLLSNKPKWLFHINFLLKTSX

Homology

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BLAST of Cucsa.169930 vs. Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.1e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 86  DKDDDDPEKNIKDAA----------DMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPR 145
           DK  +  EK ++ AA            LD+R+GRI+   +H +AD+LYVEEVDVGE  PR
Sbjct: 175 DKKGEKKEKKLQSAAPSADSKPVDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPR 234

Query: 146 LICSGLVKYIPLDQL 151
            + SGLV ++PLDQ+
Sbjct: 235 TVISGLVNHVPLDQM 249

[Close]

BLAST of Cucsa.169930 vs. Swiss-Prot
Match: SYMC_CAEEL (Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.2e-11
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 96  IKDAADM--LDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           + D  D+  LD+RVGRIIK  +H +AD LYVE++DVGE  PR + SGLV+++PLDQ+
Sbjct: 751 VDDTIDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQM 807

[Close]

BLAST of Cucsa.169930 vs. Swiss-Prot
Match: SYYC_CHICK (Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-10
Identity = 28/48 (58.33%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 103 LDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           LDIRVG+++   +H +AD+LYVE++DVGEPEPR + SGLV+++P +QL
Sbjct: 367 LDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLVQFVPKEQL 414

[Close]

BLAST of Cucsa.169930 vs. Swiss-Prot
Match: SYYC_XENTR (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-10
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 102 MLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLL 152
           +LD+RVG+I+   +H +AD+LYVE VDVGE  PR + SGLV+Y+P DQLL
Sbjct: 367 LLDLRVGKILSVRQHPDADSLYVESVDVGEENPRCVVSGLVQYVPSDQLL 416

[Close]

BLAST of Cucsa.169930 vs. Swiss-Prot
Match: SYYC_XENLA (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-10
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1


Query: 102 MLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLL 152
           +LD+RVG+I+   +H +AD+LYVE VDVGE  PR + SGLV+Y+P DQLL
Sbjct: 367 LLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLL 416

[Close]

BLAST of Cucsa.169930 vs. TrEMBL
Match: A0A0A0L299_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438550 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 4.9e-59
Identity = 123/141 (87.23%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 11  FSSSSLLLFPITSTIISPPSLHLEPFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE 70
           FSSS    F       +PP      FSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE
Sbjct: 26  FSSSLSHNFDHYLPSFAPP----RTFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE 85

Query: 71  PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG 130
           PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG
Sbjct: 86  PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG 145

Query: 131 EPEPRLICSGLVKYIPLDQLL 152
           EPEPRLICSGLVKYIPLDQLL
Sbjct: 146 EPEPRLICSGLVKYIPLDQLL 162

[Close]

BLAST of Cucsa.169930 vs. TrEMBL
Match: M5W4Z9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020734mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.8e-25
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 62  SFCTTAS-TEPVTSDASIALSSTSLDK------DDDDPEKNIKDAADMLDIRVGRIIKAW 121
           SFCT AS T+   + AS A+S  S+D+      D +D ++ IKDAAD+LDIRVGR++KAW
Sbjct: 65  SFCTAASATDASATGASGAVSDASIDEAVPPVSDVEDQKQRIKDAADVLDIRVGRVLKAW 124

Query: 122 RHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLLID---SFTNWSLFLFLLSC 168
           RH EAD+LYVEEVD+GEPEPR ICSGLVKY+PLD L +     F ++SL++    C
Sbjct: 125 RHEEADSLYVEEVDIGEPEPRTICSGLVKYVPLDHLQVPKILKFKSFSLYVANWDC 180

[Close]

BLAST of Cucsa.169930 vs. TrEMBL
Match: V4TP86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021676mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 19  FPITSTIISPPSLHLEPFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTEPVTSDASI 78
           F   ++  +PP L L   S  T   RTD  A  + R       SFCT+  T    ++A  
Sbjct: 24  FSPAASFRTPPQLPLLRSSPITTITRTDR-ALLLLRPHHPKTSSFCTSPITN---ANAET 83

Query: 79  ALSSTSLDKDD-DDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLI 138
             +S SL +   +D   N+KDAA+MLDIRVGRIIKAWRH EAD+LYVEEVDVGE EPR+I
Sbjct: 84  TTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRII 143

Query: 139 CSGLVKYIPLDQL 151
           CSGLVKY+PLD L
Sbjct: 144 CSGLVKYVPLDFL 152

[Close]

BLAST of Cucsa.169930 vs. TrEMBL
Match: A0A067DF10_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024343mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.1e-22
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 1


Query: 19  FPITSTIISPPSLHLEPFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTEPVTSDASI 78
           F   ++  +PP L L   S  T   RTD  A  + R       SFCT+  T    ++A  
Sbjct: 24  FSPAASFRTPPQLPLLRSSPITTITRTDR-ALLLLRPHHPKTSSFCTSPITN---ANAET 83

Query: 79  ALSSTSLDKDD-DDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLI 138
             +S SL +   +D   N+KDAA+MLDIRVGRIIKAWRH EAD+LYVEEVDVGE EPR+I
Sbjct: 84  TTTSESLPRPAVEDNSVNVKDAANMLDIRVGRIIKAWRHEEADSLYVEEVDVGEAEPRII 143

Query: 139 CSGLVKYIPLDQL 151
           CSGLVKY+PL+ L
Sbjct: 144 CSGLVKYVPLEFL 152

[Close]

BLAST of Cucsa.169930 vs. TrEMBL
Match: A0A068VEC9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002103001 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 62/126 (49.21%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 26  ISPPSLHLEP-FSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTEPVTSDASIALSSTS 85
           ++PP L   P  ++FTP   +  +     R        FCT  S+           SS  
Sbjct: 104 LTPPILPPSPVITKFTPATASPTLLPGWKR-------CFCTAPSSH----------SSVK 163

Query: 86  LDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKY 145
           ++ DDDD    IK+AA+ LDIRVG+I+KAWRH EAD+LYVEEVDVGEPEPR+ICSGLVKY
Sbjct: 164 VEDDDDDEMTKIKEAANSLDIRVGKILKAWRHQEADSLYVEEVDVGEPEPRIICSGLVKY 212

Query: 146 IPLDQL 151
           +PL  L
Sbjct: 224 LPLHHL 212

[Close]

BLAST of Cucsa.169930 vs. TAIR10
Match: AT3G59980.1 (AT3G59980.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-23
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 1


Query: 43  LRTDNVAGRISRNGTQFP--FSFCTTASTEPVTSDASIALSSTSLDKDDDDPEKNIKDAA 102
           LR   V     RN + +P   +FCT A     T  A  +   +   K+    E+N+K+ A
Sbjct: 51  LRVSAVYNHQQRNRSSWPRVATFCTAAPDAGTTVSADESEKKSESQKE----EENVKETA 110

Query: 103 DMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           ++LDI+VGRI+KAW+H EAD+LYVEEVD+GE EPR+ICSGLVKY+PLD L
Sbjct: 111 NLLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIICSGLVKYVPLDLL 156

[Close]

BLAST of Cucsa.169930 vs. TAIR10
Match: AT4G13780.1 (AT4G13780.1 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-11
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 81  SSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSG 140
           SS    K    P  + +     LDIRVG+I+KA +H +AD LYVEE+DVG  E R + SG
Sbjct: 617 SSKGGGKPKPQPAADREITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSG 676

Query: 141 LVKYIPLDQL 151
           LVKYIPL+++
Sbjct: 677 LVKYIPLEEM 686

[Close]

BLAST of Cucsa.169930 vs. TAIR10
Match: AT2G40660.1 (AT2G40660.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-08
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 66  TASTEPVTSDASIALSSTSLD--KDDDDPEKNIKDA---ADMLDIRVGRIIKAWRHLEAD 125
           T  TEP     + A    +    K   +PE   K+A     +L+I+VG I KAW+H  AD
Sbjct: 190 TKKTEPEEPKKNAAKEKDAKKEKKKPAEPEPAKKEAELSVSLLNIQVGLIRKAWKHPSAD 249

Query: 126 TLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           +L VEE+DVGE + R + SGL K+   + L
Sbjct: 250 SLLVEEIDVGEDKVRQVVSGLAKFCSPEDL 279

[Close]

BLAST of Cucsa.169930 vs. NCBI nr
Match: gi|449453193|ref|XP_004144343.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 7.0e-59
Identity = 123/141 (87.23%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 11  FSSSSLLLFPITSTIISPPSLHLEPFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE 70
           FSSS    F       +PP      FSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE
Sbjct: 26  FSSSLSHNFDHYLPSFAPP----RTFSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTE 85

Query: 71  PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG 130
           PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG
Sbjct: 86  PVTSDASIALSSTSLDKDDDDPEKNIKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVG 145

Query: 131 EPEPRLICSGLVKYIPLDQLL 152
           EPEPRLICSGLVKYIPLDQLL
Sbjct: 146 EPEPRLICSGLVKYIPLDQLL 162

[Close]

BLAST of Cucsa.169930 vs. NCBI nr
Match: gi|659069380|ref|XP_008449535.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Cucumis melo])

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1


Query: 36  FSRFTPPLRTDNVAGRISRNGTQFPFSFCTTASTEPVTSDASIALSSTSLDKDDDDPEKN 95
           FSRFTP LR DNVAGRISRNGT+FPFSFCTTASTEPVTSDASIA SSTS+DK DDDPEKN
Sbjct: 47  FSRFTPSLRKDNVAGRISRNGTRFPFSFCTTASTEPVTSDASIASSSTSMDKGDDDPEKN 106

Query: 96  IKDAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLL 152
           IK+AADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLL
Sbjct: 107 IKNAADMLDIRVGRIIKAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLL 162

[Close]

BLAST of Cucsa.169930 vs. NCBI nr
Match: gi|595838316|ref|XP_007207628.1| (hypothetical protein PRUPE_ppa020734mg [Prunus persica])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 65/116 (56.03%), Postives = 84/116 (72.41%), Query Frame = 1


Query: 62  SFCTTAS-TEPVTSDASIALSSTSLDK------DDDDPEKNIKDAADMLDIRVGRIIKAW 121
           SFCT AS T+   + AS A+S  S+D+      D +D ++ IKDAAD+LDIRVGR++KAW
Sbjct: 65  SFCTAASATDASATGASGAVSDASIDEAVPPVSDVEDQKQRIKDAADVLDIRVGRVLKAW 124

Query: 122 RHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQLLID---SFTNWSLFLFLLSC 168
           RH EAD+LYVEEVD+GEPEPR ICSGLVKY+PLD L +     F ++SL++    C
Sbjct: 125 RHEEADSLYVEEVDIGEPEPRTICSGLVKYVPLDHLQVPKILKFKSFSLYVANWDC 180

[Close]

BLAST of Cucsa.169930 vs. NCBI nr
Match: gi|645218070|ref|XP_008228858.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Prunus mume])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 1


Query: 62  SFCTTAS-TEPVTSDASIALSSTSLDK------DDDDPEKNIKDAADMLDIRVGRIIKAW 121
           SFCT AS T+   + AS A+S  S+D+      D +D ++ I+DAAD+LDIRVGR++KAW
Sbjct: 65  SFCTAASATDASATGASGAVSDASIDEAVPPVSDVEDQKQKIRDAADVLDIRVGRVLKAW 124

Query: 122 RHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           RH EAD+LYVEEVD+GEPEPR ICSGLVKY+PLD L
Sbjct: 125 RHEEADSLYVEEVDIGEPEPRTICSGLVKYVPLDHL 160

[Close]

BLAST of Cucsa.169930 vs. NCBI nr
Match: gi|658000277|ref|XP_008392586.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like [Malus domestica])

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 1


Query: 62  SFCTTASTEPVTSDASIALSSTSLD----------KDDDDPEKNIKDAADMLDIRVGRII 121
           SFCT AS +  ++ A+ A S    D           +  D +K IKDAAD+LDIRVGR++
Sbjct: 69  SFCTAASADDASATAATASSEAVRDAAVVDEAAPASEVVDEQKKIKDAADVLDIRVGRVV 128

Query: 122 KAWRHLEADTLYVEEVDVGEPEPRLICSGLVKYIPLDQL 151
           KAWRH EAD+LYVEEVDVGEPEPR ICSGLVKY+PLD L
Sbjct: 129 KAWRHEEADSLYVEEVDVGEPEPRTICSGLVKYVPLDHL 167

The following BLAST results are available for this feature:

BLAST of Cucsa.169930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AIMP1_CRIGR	4.1e-11	46.67	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetu...	[more]
SYMC_CAEEL	9.2e-11	56.14	Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=3 SV=...	[more]
SYYC_CHICK	1.6e-10	58.33	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1	[more]
SYYC_XENTR	2.7e-10	60.00	Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1	[more]
SYYC_XENLA	2.7e-10	60.00	Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1	[more]

BLAST of Cucsa.169930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L299_CUCSA	4.9e-59	87.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G438550 PE=4 SV=1	[more]
M5W4Z9_PRUPE	7.8e-25	56.03	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020734mg PE=4 SV=1	[more]
V4TP86_9ROSI	2.8e-22	52.63	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021676mg PE=4 SV=1	[more]
A0A067DF10_CITSI	8.1e-22	51.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024343mg PE=4 SV=1	[more]
A0A068VEC9_COFCA	1.8e-21	49.21	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00002103001 PE=4 SV=1	[more]

BLAST of Cucsa.169930 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59980.1	3.8e-23	50.00	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G13780.1	2.0e-11	50.00	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putat...	[more]
AT2G40660.1	4.5e-08	38.89	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of Cucsa.169930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453193\|ref\|XP_004144343.1\|	7.0e-59	87.23	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]
gi\|659069380\|ref\|XP_008449535.1\|	3.0e-54	93.97	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]
gi\|595838316\|ref\|XP_007207628.1\|	1.1e-24	56.03	hypothetical protein PRUPE_ppa020734mg [Prunus persica]	[more]
gi\|645218070\|ref\|XP_008228858.1\|	1.6e-23	62.50	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]
gi\|658000277\|ref\|XP_008392586.1\|	1.0e-22	59.60	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002547	tRNA-bd_dom
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000049	tRNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.169930.1	Cucsa.169930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002547	tRNA-binding domain	PFAM	PF01588	tRNA_bind	coord: 105..150 score: 7.
IPR002547	tRNA-binding domain	PROFILE	PS50886	TRBD	coord: 99..221 score: 10
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 101..150 score: 4.0
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 101..150 score: 6.12
None	No IPR available	PANTHER	PTHR11586	FAMILY NOT NAMED	coord: 93..150 score: 6.6
None	No IPR available	PANTHER	PTHR11586:SF18	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 93..150 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.169930	Cla001456	Watermelon (97103) v1	cgywmB324
Cucsa.169930	Csa4G438550	Cucumber (Chinese Long) v2	cgycuB259
Cucsa.169930	MELO3C003269	Melon (DHL92) v3.5.1	cgymeB303
Cucsa.169930	ClCG04G002910	Watermelon (Charleston Gray)	cgywcgB304
Cucsa.169930	CSPI04G19480	Wild cucumber (PI 183967)	cgycpiB267
Cucsa.169930	CmaCh07G013730	Cucurbita maxima (Rimu)	cgycmaB0482
Cucsa.169930	CmoCh07G014130	Cucurbita moschata (Rifu)	cgycmoB0485
Cucsa.169930	Cp4.1LG19g00040	Cucurbita pepo (Zucchini)	cgycpeB0469
Cucsa.169930	MELO3C003269.2	Melon (DHL92) v3.6.1	cgymedB295
Cucsa.169930	CsaV3_4G029850	Cucumber (Chinese Long) v3	cgycucB271
Cucsa.169930	Cla97C04G070280	Watermelon (97103) v2	cgywmbB308
Cucsa.169930	Bhi03G002301	Wax gourd	cgywgoB350
Cucsa.169930	Carg21093	Silver-seed gourd	carcgyB0546

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.169930	Bottle gourd (USVL1VR-Ls)	cgylsiB283
Cucsa.169930	Silver-seed gourd	carcgyB0592
Cucsa.169930	Cucurbita maxima (Rimu)	cgycmaB0481
Cucsa.169930	Cucurbita moschata (Rifu)	cgycmoB0484
Cucsa.169930	Cucurbita pepo (Zucchini)	cgycpeB0468