Cucsa.169440 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.169440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	SAUR-like auxin-responsive protein family
Location	scaffold01163 : 266007 .. 266468 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTCTCTTTTAAGTACAAGCACATTTTATCTCAATCAAATTCAGAGATGGGAATCCGTTTTCCTTCGGTCCTCCTCAGTGCCAAGCAGATTCTCAAGATGAAATCTGTTTCTATAAGATGTCAGTCTGATGTTCCCAAAGGCCACATTCCGGTGTATGTTGGAGAAAACCAGAGAAAGCGGTTTTTTGTTCCGATTTCTTACTTGAATCATCCTTCATTTGTGAATTTACTTAGTAGAGCTGAAGAAGAGTTTGGATTCAGCCATCCAACAGGAGGTTTGACCATTCCCTGCAAAGAAGAAGCCTTCATTGATGTCACTTCTAGATTGCATATTTCATGAAGGATTGAGACCATAGAGAATATTCTCTCAATTTTGTTTATAGAAGATAAAAGTGAATACCACTGTAAATGGAAACTTTGACACACATGAGTTGCAATGAAGTTAAATTCTTTGTCCACA

mRNA sequence

ATATTCTCTTTTAAGTACAAGCACATTTTATCTCAATCAAATTCAGAGATGGGAATCCGTTTTCCTTCGGTCCTCCTCAGTGCCAAGCAGATTCTCAAGATGAAATCTGTTTCTATAAGATGTCAGTCTGATGTTCCCAAAGGCCACATTCCGGTGTATGTTGGAGAAAACCAGAGAAAGCGGTTTTTTGTTCCGATTTCTTACTTGAATCATCCTTCATTTGTGAATTTACTTAGTAGAGCTGAAGAAGAGTTTGGATTCAGCCATCCAACAGGAGGTTTGACCATTCCCTGCAAAGAAGAAGCCTTCATTGATGTCACTTCTAGATTGCATATTTCATGAAGGATTGAGACCATAGAGAATATTCTCTCAATTTTGTTTATAGAAGATAAAAGTGAATACCACTGTAAATGGAAACTTTGACACACATGAGTTGCAATGAAGTTAAATTCTTTGTCCACA

Coding sequence (CDS)

ATGGGAATCCGTTTTCCTTCGGTCCTCCTCAGTGCCAAGCAGATTCTCAAGATGAAATCTGTTTCTATAAGATGTCAGTCTGATGTTCCCAAAGGCCACATTCCGGTGTATGTTGGAGAAAACCAGAGAAAGCGGTTTTTTGTTCCGATTTCTTACTTGAATCATCCTTCATTTGTGAATTTACTTAGTAGAGCTGAAGAAGAGTTTGGATTCAGCCATCCAACAGGAGGTTTGACCATTCCCTGCAAAGAAGAAGCCTTCATTGATGTCACTTCTAGATTGCATATTTCATGA

Protein sequence

MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS*

Homology

[Close]

BLAST of Cucsa.169440 vs. Swiss-Prot
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.8e-24
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 9  LLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSRAEEE 68
          LL AK+IL   + ++   S  PKG + VYVGE+Q+KR+ VP+SYLN PSF  LLS++EEE
Sbjct: 7  LLVAKKILSRSAAAV---SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEE 66

Query: 69 FGFSHPTGGLTIPCKEEAFIDVTSRLH 96
          FGF HP GGLTIPC E+ FI+VTSRLH
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of Cucsa.169440 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 5  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSR 64
          F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VP+SYLN PSF  LLS+
Sbjct: 3  FVRSLLGAKKIL---SRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSK 62

Query: 65 AEEEFGFSHPTGGLTIPCKEEAFIDVTSRL 95
          +EEEFGF HP GGLTIPC E+ FI+VTSRL
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Cucsa.169440 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-23
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 1


Query: 5  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSR 64
          F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VPISYLN PSF  LLS+
Sbjct: 3  FVRSLLGAKKIL---SRSTTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSK 62

Query: 65 AEEEFGFSHPTGGLTIPCKEEAFIDVTSR 94
          +EEEFGF HP GGLTIPC E+ FI+VTSR
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSR 88

[Close]

BLAST of Cucsa.169440 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-23
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 9  LLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSRAEEE 68
          LL AK+IL   + ++   S  PKG + VYVGE+Q+KR+ VP+SYLN PSF  LLS++E+E
Sbjct: 7  LLGAKKILSRSTAAV---SAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 69 FGFSHPTGGLTIPCKEEAFIDVTSRL 95
          FGF HP GGLTIPC E+ FI+VTSRL
Sbjct: 67 FGFDHPMGGLTIPCHEDTFINVTSRL 89

[Close]

BLAST of Cucsa.169440 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 1


Query: 5  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSR 64
          F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VP+SYL+ PSF  LLS+
Sbjct: 3  FVRSLLGAKKIL---SRSTAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSK 62

Query: 65 AEEEFGFSHPTGGLTIPCKEEAFIDVTSRL 95
          +EEEFGF+HP GGLTIPC E+ FI+VTSRL
Sbjct: 63 SEEEFGFAHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Cucsa.169440 vs. TrEMBL
Match: A0A0A0LLF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.2e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN
Sbjct: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

[Close]

BLAST of Cucsa.169440 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.7e-46
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFVN
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

[Close]

BLAST of Cucsa.169440 vs. TrEMBL
Match: A0A0A0LIZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.1e-38
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MG R PS+L SAKQILK +S+S RCQS VPKGHI VYVGE Q+KRF VPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLD 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LL RAEEEFGF+HPTGGLTIPCKEEAFIDVTSRLH S
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

[Close]

BLAST of Cucsa.169440 vs. TrEMBL
Match: A0A0A0LJ92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-37
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIR PSVL +AKQ+LKM+SVS R QS VPKGHIPVYVGE  RKRFFVPISYL+HPSFV 
Sbjct: 1  MGIRLPSVLAAAKQVLKMQSVSARSQSIVPKGHIPVYVGETDRKRFFVPISYLSHPSFVE 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LL++AEEEFGFSHPTGGL IPCKEEAFIDVTS+L  S
Sbjct: 61 LLNKAEEEFGFSHPTGGLRIPCKEEAFIDVTSKLQSS 97

[Close]

BLAST of Cucsa.169440 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-36
Identity = 72/97 (74.23%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIR PS+LL+AKQI +M+SVS RC S++PKGHI VYVGE +RKRF VP+SYLNHP+F++
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LL+RAEEEFGF+HP+GGLTIPCKE+AFID+TS+LH S
Sbjct: 61 LLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of Cucsa.169440 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 117.1 bits (292), Expect = 6.2e-27
Identity = 59/99 (59.60%), Postives = 70/99 (70.71%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILK----MKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHP 60
          M IR P VL S+KQIL+    + S S     DVPKG++ VYVGE   KRF VP+SYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFVNLLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLH 96
          SF +LL +AEEEFGF HP GGLTIPC EE FID+ SR +
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

[Close]

BLAST of Cucsa.169440 vs. TAIR10
Match: AT5G18060.1 (AT5G18060.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.9 bits (276), Expect = 4.4e-25
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 9  LLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSRAEEE 68
          LL AK+IL   + ++   S  PKG + VYVGE+Q+KR+ VP+SYLN PSF  LLS++EEE
Sbjct: 7  LLVAKKILSRSAAAV---SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEE 66

Query: 69 FGFSHPTGGLTIPCKEEAFIDVTSRLH 96
          FGF HP GGLTIPC E+ FI+VTSRLH
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of Cucsa.169440 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-25
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 1   MGIRFPSVLLSAKQILKMKSVSIRCQSD------VPKGHIPVYVGEN---QRKRFFVPIS 60
           MG+   ++  + KQILK+ S++ R ++       VPKGH+ VYVGE    ++KRF VPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFVNLLSRAEEEFGFSHPTGGLTIPCKEEAFID-VTSRL 95
           +LNHPSF   LSRAEEEFGF+HP GGLTIPC+EE F+D + SRL
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

[Close]

BLAST of Cucsa.169440 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-24
Identity = 57/98 (58.16%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGEN-QRKRFFVPISYLNHPSFV 60
          M IR   VL S+KQ+LK  S S    + +PKGH+ VYVGE  Q++RF VP++YL+HP F 
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSSNNVA-IPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 NLLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
           LL +AEEEFGF HP GGLTIPC E+ FID+ SRL  S
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

[Close]

BLAST of Cucsa.169440 vs. TAIR10
Match: AT5G18080.1 (AT5G18080.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 1


Query: 5  FPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVNLLSR 64
          F   LL AK+IL   S S    S  PKG + VYVGE+Q+KR+ VP+SYLN PSF  LLS+
Sbjct: 3  FVRSLLGAKKIL---SRSTGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSK 62

Query: 65 AEEEFGFSHPTGGLTIPCKEEAFIDVTSRL 95
          +EEEFGF HP GGLTIPC E+ FI+VTSRL
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Cucsa.169440 vs. NCBI nr
Match: gi|778669595|ref|XP_011649275.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 6.0e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN
Sbjct: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

[Close]

BLAST of Cucsa.169440 vs. NCBI nr
Match: gi|778669591|ref|XP_011649272.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFVN
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVN 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

[Close]

BLAST of Cucsa.169440 vs. NCBI nr
Match: gi|659115594|ref|XP_008457634.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 4.7e-45
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MGIR PSVLLSAKQILKMK+VS RCQSDVPKGHIPVYVGENQRKRF VPISYLNHPSFV+
Sbjct: 1  MGIRLPSVLLSAKQILKMKTVSTRCQSDVPKGHIPVYVGENQRKRFLVPISYLNHPSFVH 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS
Sbjct: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 97

[Close]

BLAST of Cucsa.169440 vs. NCBI nr
Match: gi|449458550|ref|XP_004147010.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 7.3e-38
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MG R PS+L SAKQILK +S+S RCQS VPKGHI VYVGE Q+KRF VPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLD 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LL RAEEEFGF+HPTGGLTIPCKEEAFIDVTSRLH S
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

[Close]

BLAST of Cucsa.169440 vs. NCBI nr
Match: gi|659115590|ref|XP_008457631.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 1


Query: 1  MGIRFPSVLLSAKQILKMKSVSIRCQSDVPKGHIPVYVGENQRKRFFVPISYLNHPSFVN 60
          MG R PS+L SAKQILK +S+S RCQS VPKGHI VYVGE Q+ RF VPISYLNHPSF++
Sbjct: 1  MGFRLPSILFSAKQILKAQSISGRCQSSVPKGHIAVYVGEVQKTRFLVPISYLNHPSFLD 60

Query: 61 LLSRAEEEFGFSHPTGGLTIPCKEEAFIDVTSRLHIS 98
          LL RAEEEFGF+HPTGGLTIPCKEEAFIDVTSRLH S
Sbjct: 61 LLRRAEEEFGFNHPTGGLTIPCKEEAFIDVTSRLHTS 97

The following BLAST results are available for this feature:

BLAST of Cucsa.169440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU23_ARATH	7.8e-24	62.07	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana GN=SAUR23 PE=2 SV=1	[more]
SAU24_ARATH	3.9e-23	62.22	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU20_ARATH	5.1e-23	62.92	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU22_ARATH	5.1e-23	60.47	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU19_ARATH	1.1e-22	61.11	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of Cucsa.169440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLF7_CUCSA	4.2e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258750 PE=4 SV=1	[more]
A0A0A0LM65_CUCSA	8.7e-46	95.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1	[more]
A0A0A0LIZ4_CUCSA	5.1e-38	81.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1	[more]
A0A0A0LJ92_CUCSA	3.3e-37	81.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	2.8e-36	74.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]

BLAST of Cucsa.169440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38840.1	6.2e-27	59.60	SAUR-like auxin-responsive protein family	[more]
AT5G18060.1	4.4e-25	62.07	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	7.5e-25	55.77	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	1.3e-24	58.16	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	2.2e-24	62.22	SAUR-like auxin-responsive protein family	[more]

BLAST of Cucsa.169440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669595\|ref\|XP_011649275.1\|	6.0e-48	100.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669591\|ref\|XP_011649272.1\|	1.2e-45	95.88	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115594\|ref\|XP_008457634.1\|	4.7e-45	94.85	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|449458550\|ref\|XP_004147010.1\|	7.3e-38	81.44	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115590\|ref\|XP_008457631.1\|	3.6e-37	80.41	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.169440.1	Cucsa.169440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 13..93 score: 1.2
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..97 score: 1.2
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 2..97 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.169440	ClCG11G003720	Watermelon (Charleston Gray)	cgywcgB301
Cucsa.169440	CSPI07G00650	Wild cucumber (PI 183967)	cgycpiB266
Cucsa.169440	CmoCh20G007980	Cucurbita moschata (Rifu)	cgycmoB0482
Cucsa.169440	Lsi10G004550	Bottle gourd (USVL1VR-Ls)	cgylsiB282
Cucsa.169440	MELO3C020766.2	Melon (DHL92) v3.6.1	cgymedB294
Cucsa.169440	Cla97C11G210390	Watermelon (97103) v2	cgywmbB304
Cucsa.169440	Cla97C11G210270	Watermelon (97103) v2	cgywmbB305
Cucsa.169440	Bhi10G001527	Wax gourd	cgywgoB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.169440	Cucumber (Chinese Long) v3	cgycucB270
Cucsa.169440	Cucumber (Gy14) v1	cgycgyB107
Cucsa.169440	Cucurbita maxima (Rimu)	cgycmaB0479
Cucsa.169440	Cucurbita maxima (Rimu)	cgycmaB0480
Cucsa.169440	Cucurbita moschata (Rifu)	cgycmoB0483
Cucsa.169440	Wild cucumber (PI 183967)	cgycpiB265
Cucsa.169440	Cucumber (Chinese Long) v2	cgycuB257
Cucsa.169440	Cucumber (Chinese Long) v2	cgycuB258
Cucsa.169440	Melon (DHL92) v3.5.1	cgymeB301
Cucsa.169440	Melon (DHL92) v3.5.1	cgymeB302
Cucsa.169440	Watermelon (97103) v1	cgywmB321
Cucsa.169440	Watermelon (97103) v1	cgywmB323
Cucsa.169440	Cucurbita pepo (Zucchini)	cgycpeB0466
Cucsa.169440	Cucurbita pepo (Zucchini)	cgycpeB0467
Cucsa.169440	Bottle gourd (USVL1VR-Ls)	cgylsiB281