Cucsa.167410 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.167410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	toprim domain-containing protein
Location	scaffold01154 : 762491 .. 778271 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCGTCGGAAGCAAGCCGCCGAAGAAAGTTGGGGTGGTTTGCAGCAACCAAAACCCACTCTTCGCACACCCCTAACTCCTTCCTCTCTTTACCAATATTCATTTCAATGCCCCTGCCGGTTTCTTCAGTCTCTACCTACCTACTATGTTATTTTTAACTCTGTAGTGTAGACTTGAAATGGTGGCCATACTCAGCTGATCACCTTAACCCTACCAATAGCCAGAATGCGTTTTCTTCATCACAATCACCGTCTCTATAACCCCTTTTCAAAACTCTCTTCATTTTCCTCACCATTTCGTCTAATGGGTTCCTTTCCTTTATGCAAATCAACCTCTCTGGTTTTCCTGTCACACCTTTCTTCTTCTTTTTCGCAGAAGTATTTCCTGTACAGAAGCATTTCTCTTCTCCATGGTTCATTTCCTGTACGACCCTTGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAGACCTCCAGGTGCTATTATTGGAACTTTTTATGGTTGTTTAATTGTAGTTGGATTTATGATTATTTCTGCTTAATACTCATGTTGTGGGGTAACTTGATGTTTCTTGGCTGGGTGGTTACTCTTTTTTTTTCCCCTCTTTTTGGATTGGGATGAAATAGGATTTTTGAAGGCAGAAAAGTAGTTTGCAGGCAATGTATTTTGAGGATGGGACTTGGGAGAGGACTTGACGTTTATTTAGTTTTAATGTTATTCGCTTTCTTCTTTGTGCAGCCCTTTTGGGGAATCCACCAGACAAGGCTTCAATCTCCACTCGATTGAATATTCTAAGAAAAAAATTGCAGGATCTTGACATTGATATCGAAGCTTGTGTTCCTGGGCAGTTTTCCAGTTTGCTTTGTCCAATGGTATTTTGTTTCTAATATCAGTTTCTTTATGCACACTATGTTCTGTTTTGAGATATTCATCCAATTTGTAGAAGTGAAATGAAAACAGCTGCCAACTTCTATATCTTATTTTTTGTACAACGTAAACATTTAGAGGCCAATTTTAGAATTACTGTATGAACTTATAACTTCCAAGTGCAAAGAGGTTGGTATTATCATTATTATATTTATTTTAAAATTTTAATTTTTTTAACTTTACTCGATTAATTATGTATCAAATTGGTGCCAGTGTAAAGGTGGTGATACAAAGGAACGATCCTTCTCCCTAAATATCTCAGAAGATGGGTAAAGATTTTATAGCTTCTCTCTCGTCGAGTTTTTCTTAGAATCTTTTTATTTGATGTACTCATAGGCTTTGTGTGTTTGTGTTTTTCTTATATGGTTTGTTTTAAATGTTTTTGTGGAAGTTATTTAGGGTGACTTGTAATTATTAAGCTTCTTCCTCAGTTGAGTTTAAGTCATTTTACTTTTTATACTATTAGTATTTGTTATTTTTTTTGAAGAGGAAAGAAGTCTCAATATTATTAATGAATTAAATAGAGACAAATGCTCATAGTACTAGAGGGTATGGGCAAAGAAAGAGAGAGAGGCAGATCAACAAACGCACCCGGACATCTCATTTAGGTTGACACTCCTTAGCGCCCTCATCATGTCCATAGTGTGGAAAGAAATAAAAATGATCTTTTCTCTAGGTTGATAGTAGTCAATACAAAGCCAAAATACAAGCCCAAAATAAAGTAGTCAGTCCATACAGAACATTAGAAAAAAAGCATCAACGATATATTAGAAAAACATTCCTCGTCTCTGCATAGATCCATCTCCTGCCAGATAAGTGAGAATTTGTTAAAAAAGGATGTAACATCCATGGTCCCTTGCCTGCATTCATGAACTAGTTTCTGTACAGTATATTGATGAGACATTTTGATGTTTGGAATACAGTTTTTGGGCTGTGTCCTAAGTATGTTTAGGGTAAAGGTTTGCCAATCTGTGGCTCCATGCTATTAATTAATGTGGATCAAAGAAGAGAATCTTCATGCCCTTCTCCTTTACCTTCCTTGGCTTTTATCTCTTTCTTTGAACTAACTTTGGCCCACCGTGGTCCCCTATCTCCTTCCTCACTGTCTAAGTTTCCCTTCACACGTGCTTCCTCTTTCTCTTACGCATTCTACTGTATTGTAGAATAATAGGATGTCTACCATATTGTATCATAAAACAACATCAAAAAAGGAGAAGAAAAACAAAACAAAAAGACAAACTATACCATATAATATACAATCAATATCAAATCAAGTAATAATTTTAAGTCATTTAAAATTGGCAACTCAACAACCTCACGCAACTTTTCTTTTAGTCAAATAATGGTCAATTTAAAATAGGGGTCATTTATGACTATTTTCCAAAACTCAAGGACTAAGTGTTTACTTGGGAGTTAAATAGACATCAACACTAATCCTCAAGGACCAAGTATATGTTTCCCTACGTTTTGTAACAATCTTTTTGGTTATCAATTTAATTTAATTATAAATATGATTATTTTCAAATTCTTTATTTATTTTTTCTTGATATACATATAAGGCTGTGACAAGTTGATGGACTTAAACTCCATAGTTCGTTCACTACTAACCTTAGTTTGATTCTTAGCTTTTTTTTTTTTTGTTCAATGAAATTAATACTTTTTTTCTAATGAAAAGTGGTTGGATTTCCTTCCCATCCACTGGACTTTTCAATTTTTCAATTGCATTGACCTGAATGTATTCTACGGCCTTTTTCTTTTTGAGTATCACATGTTTCTAATTTCCATTTCAAATGACCAGGGAGGCTGCTGTTTGGAATTGTTTTCGTGGAAAATGTGGTTGGAAAGGCCATACTCTGGTATTTATAATAATTCAATTAGATATGCTTTCACACAAAATGTGGTTTGGGCCCTTTCACGTAGGGTTGATTTGAATAGTTCTTCAGTTATGTTTTGCTTTGTTTTTTTCTTTCTTTTTTATATATATATATTTTTATGAGATAATTTGGTTTTTGTTTCAATTTCTTGTATTTTGTTCAAATATCATAGAATGTTCCATAAAGTTTAATTGAGTGGTATCCTTACTACTTGTGGGAAGGGGTTGACGATGAAGGGTCTCATTTGGTTGATTGGAAATTAGTGGTTAAGCTAGTGGAACTAGTAGGATTAAGGATTCTTCATGGATTGCTTTGTGGTATAAAGTTATTGTGAGCAGATATGCCTCACACCCATTGATTTTTAAAGCTCAAGGCACAACAGTCTTCTGGGCACACGCACAAGTCGCAAAAGAAAAAGCTTAAGCTTTTTTGTTTAGGTGTACAGTACTACATTAAGAAGAGAGCCTAGACAAAACCCTTAGTTATTACTAGTTTTTTTTTAAAAAAATAATGAAGACCCTCCAAACGCAGGGTTTTGAGCCTTTGGGCATCACAAAAGACGCATGAATGAGACGCTTCTTGTTTTGTGAGTCTCGCCTTTTCCAGCAAGGCACCAAACTTGGGCTTTGAGCCTAGGTGCGCACCCGAGTGGGCTTTTCAAAAACCGTCCAGAAAGCAGTTGTTCTGTCTAAATACATAAGAAAAATGAAAAATCTATTGGAAGCTATCTGATAGATACCTACATTTAGATAGGGGTAAGGGTAGTTAGTTATATAAGGCAGTTAGATGGTTATAAATAGGGAGGTGGGGAGGGAAGAAGGGCATGAAGAATTTGGTGAAGAATTAGGGCTGCAACATTCCTTGAAAGAGAGGAAGGGCAGAGGGTTAGGGTTCTTTTACTTTTCTTTTGCTGCTTTTATATTGTAATTTTCTGTTTGAGATATCAATAATTTTTTTTTGAAATGGAGACGAGCTTCTTTATTAATAAAGGAAAATGAGACTAAAGCTCAAAGTACAAGAGAATTATACAAAGAGCAAAAAGTAAAGACAAACAACCAAACAAACTGCCCAAAGACAACCTCAGCGAATACAAGGAAAAAACGACTAAAACAAAACAAATGCAAAGAACAAGCTAAAAACGCGAAAACCAACAGAAAAAATGAAGATAAAACAGAACCAAAACGAAGAGAAATAAATACAAAGCATAACAAAATAACTTTCTCAAAAGGAAACCATTTGGATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGACATATCGATAAAATAGAAACACTATATCGGTGTTCTATCACTATCACATATGGATTCCCTTTATTCTCTCAATTTCTCAAATGGTTTGTTGGGCAAGGCTTGAAAAGTTTATTTTGGGAGATCGTTGGACAGGTGGGTATAAAACTTATATTATTAAAATAATAGAAAACCAGTTGGCGTGTCTATTATTTTATTTATACTTTTTTACTTTCCAACATGTTAGGACACTTCCAAGACACATCTAACTATTGTCTTTCAATATCTATCATTGGTAGGTTCTAAACTTTTTCTATATTTGTAAATATTTTAAGCAGTTTTGTCATTTATAGAATCCTTAATAACAACGACAACAATGTGTCAATGTACTGTGCCCTACTTTGCTAGGTTCTAGACCAACATATTCTTTGGGAGAGAAGGGACTCTAGAATTTGGTCTCCTGATCCTTTGCTAGGCTTCTCCTCTTGGTTCCTATTACATATTTTGTTTGTTGCTTTTCCGACCCAGATTAATTCTGCTTTTGTCGGAATTTGGAAGAGTAAAATTCCAAAGAAGTTCAGTTTTTTTCCTGTGACAGGGTTTACATGGTGATTATCATTTAACAACATAATTTTTATGTATTGAGAAAAGGACTATATCATCGGCCAGTTGTACGTGGTTTATGCTACGTGATTATTTACAGGTTCAAAACTGAGATTGATGGCAACAACTTGAGTCGAGCTACTAAGCTAAGGCAACCCACTAGGCCACTACCAAGTTTAAAAGGGAGGGAGATTTGGGATCTCCAGGCCTAAAACCTCTTGATCCAATGATCTTCTCTTCTTTTCTTATTATTATTTAGGCTAATTGAATGGTGGGGTTTTATTTATTTATTATTGTTTTCTTTATTTTTCTTTTCTTTGGGTAGGCCAACTGGCTTTTAATGATGGTGTCCTATCACTCGTGTATTTGTTTTCGATTGCTGTGAGCGTTTCTTATAAAAATGGAAAAAAAGTTTACAATGCAAATTGGTGCCTTTTTTTTCTTATTTCTTCCGTTACTTTACTTTACTGTTTTTATTGGTTTTATTTTTATTTCCATTGAGCATTAGTCTCTTTTTAATATATGAATTTTTTGTTTATTTATTTATGTTGTTCATTTTGAAAAACAAGAACTTATTGCTTCAATCTATATGAATGCGTGATTGAGTTGTTTGTCTTAGCATAGTTTGTGATGGCAGGCCTTTACTGATGGTCGGTCATCATATAAAGATTTAGGACAAGTTGCACTTAAGCAGAACATACGGAAAATTACAGTGGAGAGTCTACAACTTGAACCACTGTGCGATGAGGTTCTTGATTTTATATTTTTCTTCATTTTGATGATAATTATTGCTTTCCGGTCTATGTGAAAGCATATATGTATATTATTGTGTAGTTTTCTAAATATGTTATTTATAGGTGGTCATCAATTCTTTTTCCTTTATTGTCATCCTACATTTTGTTCTATTAGGAATACTTATTTTTCTTGAAATTAAGAATTTAAAATTATCCCAAAGTGCATTAAAACCTGTTAAAACACATTAAAAATAGGTATACTTTCATCTTTATTTTTAGGAATTTTTTTAACAACTTTATAATTTTTTTTCCCTATATGTTTGGAGTGCTAAGTTGTTTAACTAAGAATCGACTATTGAATCGTATAAGTTGATTTCTTTAAACAAATGAAATTTATTTTAAAATTTTTACTATAATTTTGTAAACTAAGCATGGATATAAATATTTCCTTTTCATATGCAATTCAATTGCTCTTATAATTGTGGAACATAGAGAAAATTATTATGTTTCTTGTTTCAGCTGGTTGATTATTTCGCGGAGCGATTGATATCCAAGCAAACATTGTTAAGAAATTCAGTTATGCAGAAAAGATCCAATAATCAGGTAAAAGGAGTTATGTTGAATTGAAGTAGTCATGGAGCATTGGCCTTCGGATGATAATCTCTTAGGGTTCGTTTGGTTTAAGATTTTTCTACCTAAGAATTAGCACATACATTTAAAACTCATGTTTGTTTCACAATTTTCTAACTTTTGCTGGGAATAACTGATTCCCAGGCATCCTTATTTACCACATACCAGGGTTTTTTATTCTCTTCCTAAACAGTGAGTTTCCTCTTTTTCCCCTCTATTTTTTTATTATTTTATTTGAAATACAGTTAACTAATTAATACTAACTTTAAAAAAATAATATAAAATATTTATTTTAATGAATTAGTAACAGTCTAATAAAATATTTACCTAACTTATTTTATAATAAAAAATTATTAAATGAATACAATTATTTCTTTACAAAAATTATTATTTAATTAGCTAACAATATGTTAAATATATTTTAATTGATAAATTAAGATCGATTAAATTTAGTAAGACAAAAATTTATTTTTCAATAATAATAATTGATTACTTTATTGTTTTTTCAATAATCAAGCCATTATTTCTTAAGATTAGTTTTAATTTATATTACTTCATTCACGAAAAACATATAATATTTATAAAACCTTTTTTAGTATTCTTTATTGATATATCATACTCCTATCTCATTTTTTCATTTTTCATTTAATATATTGAATTAAAATATATTTTCTTATAGTATTTAATTGAAATTGAAATTACTAACGATAGAGTTAATTAATTATAAACATGATTAACTATTCGATTGTAATTAATATTATCTTCGTTAAATATTTCAATGGGTTAATTATAATTATCAATTTCTTTAAAAAAATTAATTATAAATCTCAATTTTAAAGTATTTATAGTAAAAAATATTATTGATTCCAAATTAATTAATTATTATCAATATATTTTTTAATTAATTAATCTATTAAGTTTATATAAGAATTTTCTGATTAATTTCATAAATTAAATTCAAACATATTTTTTGTCCTTAAAATTCTAATAGCATTTTCTATGCTCAACCAAACACTGTCATCTTATTCCCAGGTATTCCATTCCTAGGCATCTATGAAACCTTAGACCAAAGGACTCCTTAATGGCATCTAAGCATGCTAAATGTATTGATAAAGTGTGCTTCATTAACTGTGGAAGAATGCTTCAATTTCATAAGATGCAGTTTGATCTTTTGTAAAATTTTGTTGTCTTATAGAGCTGCCTTGACTTATTATTATTTATTTATTAAAAGGAAACAAGACTCTTCATTGAGTGAAAATAAGTATTCTTAATATTCTGCCATTGAATTAGATAAGAAATATCGGGAATGTATTGCATTTTGAATCTTTGGAAAGGAAAACTAAAAATTAAAAAAGAAAAAAAAGGAAACCTAGGAAACAAGTTTACCTTTGACTTCTCTCTCTCTTTTGTGGATTAAGGGGGACGGTTTCTGTAAAGTTACAAGTTTTGACCTTTTTAATGATTCGTTGTGATGGAGCTTCATCATCTTAGTTGCTTTTGTCTTCTGCTTATTTTGTGCATTTGGGGGTGGAGAGGGGCAGATATCAAAGGGAAATTATGTAGTTTTAATTACAAAGCATATTTTGACAGCAAGAATGTTGAAACTTGAAAGCTGTGATTATTTTGGTGATATTGGAGCCATAACTCTTGCCTTGTATAAATTTTAACATGCTTACTGGAGGAAAATTTTAGCATGATTTGCTGCTTCTAATTGCTTACTTGTTTCTACAGATTGCTGTTGCATTTACATATTATCGAGGTGGAGCATTAATTAGTTGCAAGTATCGTGATGCCAAGAAAAGGTTCTGGCAGGTTCTTGGTTCAACTTATAAATAAAACTGTATGATAAATTTTTACTTATCCTGATTCTAAAGGCTTAAAATATATGCTTAGAGTAAATTCAGTTCATCTTAAATCATTTTGATTTTACCTTCTTCCCACTAGAAAAGTGTGCCGTCTGCTTTACTTGTATAATGTTATTGTAAGAAAATATATATAATCATCATCTGATTGTCTACCTTCCTTTATTTCAGGAGGCCAAAACTGAGAAAATATTTTATGGATTGGATGACATAGATGGTGCAAGTGATATCATCATAGTATGAGTTATCTAGTATGGAAAATCACTCCACTTAGATTTATTACTCATAATTTTCCTTTGTAATATAGGTTGAAGGGGAGATAGACAAGCTCTCAATGGCAGAAGCTGGTATCCATAATTGCGTGAGTGTTCCTGATGGTGCACCACCATCAGTTTCCAAAAAAAACGTACCTCCTGCACATCAGGTTACACTTTGAGGACCTTGAATATTTTTTAAGCCTTAACCTTAGCCATCAGATTTGTTTATAACCAAGATTTGGTAGTCTTTTCTTCATTCACACTCCACCTGATTCTTATTTTAAAAATTGACTAGCAAATCACTTTCATCAGGCAACAGAACTGGCGTATATAGCTAGCTAGAAGATCTTCCTTGATGAAGTTAATGAATTAGCATTAGTAAAGGATTTCATTATATTCTTATTTTAAAAACTGACTAGCAAATCACTTTCATCAGGAGAAATAATAATACAAAAGTAAACATGCTGAAAGGCCTCATAGTTGTTGAAATTTTCATGTTATGTTACTTTCTTGTCAGGGACGGTTAGCTTGAGAGTGTATGTCTTGTTTTGTTTTGTTTTTTTTTGTTTTCTTTTTGTTTTTGGATAAGTATTCTTGTCTTCTAAGAAGCATCGACACTCCTAAGATGGCCAAGTGTCAATGTCTGACACGTTTCCAACACACATTCCGACACCTCTCCAACACGCCAGCTTGCTGTCAATTATTTTAATATTTCTTGTTAATTTCCGACATGGCTCCAACACGCCAAGATACTGGAGAGACACAGCTGGAAAAATAAAACAAAGAAAACATTAGAGAAAGCCCATTAGCCCGACCAACCATTATTGGGTTTTTCTTTTTCTTTTTGTACTTTTGGCTTTCACGCATTTCTCTTCTTCACCTCTCTATCGAGTGTCATGTCAGTGCTCCCCTGTTTATCGTGCCCTCTCACTGCTGGTTTCTTTCTATCTTTCTTCTTTTATTTTTAATTTTTTAATTTTTCATGCTTTGTGGTCAGACAGTACGATATCAATTATCATATAAATTTTGTATTTTTCCAAGTATGGTTATTAACATGTTATTTTGATGTTTTTAATTGGAATATTTCACAATATGTTTATATGCATGACATATATTTAATCTTTTTCACTAAAAAATGAACGTGTGTCTGACGTGTCATGTCCTACTTTTTTTAAAAATGGAGTGTTGATGTGTTGCATGTAACTATATGTGCTTCCTAGCTTGTCTTATTGCTCATTCTAGCTCTTTCTCCCATTTTACACCTATTTGGGTAATGTTGTGTGTTTAATTTGCTTGTGTTAGAAATAGTGGACTTGGGTCATGTTGAAAGCCCAAGGGTAGTTGAGATTTACTTTACCCTGATTTTTTATTATTTTAATTAGGTTCGTGTTGCCTATAAATATTTTCCAATTTGTACAATTATTATCATAAGAAAATAATAAGAACTATCAGCATCGTGGTTTTTCTCCCTGTACTAGGATTTTCATGTAAATTTGTATTTGTTCTACATCTTTACTTTCAATATTCTATAAGAGCGAGATATCGAAGAAGCCCTAGAAAATCAAACACTTGATGGAACCCCAACAGAAGGGACAGTTGTCGACATCAGTGCGGCCATTGTTGCTGCAGTTGATGCCCGAATTAGCGATGCCATGGATGAGTGGTTCTGGCGTCTTCAGAACCCATCGCCAGCCTTCCTGTCCCGTTGTAATTGTTCGGCAATCAGTAGCCTTCAATAGCACAGGTCCCTCACGCGCCGCTGGTCCAGATTCTCTCATACGTGTTGTCTAGCCCTCATGCATTGTTGCTCGTGCCTACACGTTCACTGTATGAACCGTCGCACGCGTCGCTCTCAGGACTTTCCTAGTCGTCGCTTAGTTCAGTTTTTTTCTGCTGTGAGATTATGTCACCTCCTACTAGGGGTTCATCCAACAACTGTTTGACCTCACGGTGTATTCTAAAAATCCAATAACCTCGTTCCCTGCTTTGTCTTCTTCTTATGTGTCTAATCCAATGGTATAATCTACATGATATTTTTCGAGGGAGAAATTGAATGGTCAAAACTATTTTACGTGGTCCTAGTCTATTAAAATGATCCTTGAAGGGCGCCACAAGTTTGGTTCCTTGACAAGGGAGATAGCTCATCCTACACTAGGAGACCCTCGAGATCATTCCTGGAAAGAGGACTTTCTTATTTGGTCCACATTGATCAACAATATGGAACCACAGATCGACAAGCCCTTACTGTATGCTGCAACTGTTAGGACATTTGGGATATGACTCAACAATTGTTTTCCAAGCGTCAAAATGCCTCTTGTTTATACACTCTGCAAAAACAAATTCATGAATGCAAACAGGGGACAATGGATGTGGCATCCTTCTTTAACAAACTTTCCCTTATTTGGTAGGAAATGGACCTATGCGGAGAAATTGTCTGGAATCATCCAAGCGATGGCATACAATACTCCAGGATCGAGGTGGTTGACAAGATGTATGTTTTTCTTGCAGGTCTCAACCCTAAGTTCAATATTGTTCGCGGACGTATACTAGGTCAGAGATCGACTATACCCTCTCTGATGGAGGTTTGTTTTGAGATTTTCCTTGAGGAAGATTGTACCATGCTGTGAGTAATCTGACGAACCCGAGTATTAAGTTTAAGGTTTAAGTCCAGGCGTTCAGGCACTTCATTTAGAAGTGTTAGGATTGCCTAAAGTTGTGTTCGCACTTGGGAACATGAGAAGGCGGCGTTCTAGGTTGGGCATGACAGTAAGAGACTCTTCTTGCTTGATGATAATGCCTTCTATAGCAGCATTTCTAAGACTAGTCTTTTATTTTCATATTTTACTACTTGAAATAAAGACCAACATTTTCGTTTAGGCCACCCAACTTGTAAATATGAAATACTTATTTTCTCATCTTTTTTCTAAAGTTGATATTTCTACCCTGCCTTGAGATGTGTGTATTCGGGTTAAACAACATCAAGTCTCATTTCCTAACCATATCAGCCAACCCAACCTTTCACTCTTGTCCATAATGATGTTTGGGTATCGTCCAAGGTCACTACCTCCTTTAGCAAACGGTGGTTTATTACCTTCATTGATGACCCACCCGTCTTTCTTGGGGTTTCCTCATCTCTAACAAATCCGAAGTCACCTTCTCATTCTGGAACTTCTATCACACCGTAGAATCACAATTCAATGCAAAGATTGCAATCCCATGCAGTGATAATGGTTGTGAGTTTCAAAACTACACCCTTAATGTGTTTTTGTCCTCTAAGGGAATTCTCCACTAGGGTTTCTGTGCTCACACCCCTCAACAAAATGGGTTGTTGAGAGAGAATCGTCACCTTTTGGCTTCACTTATGTTGTTTACTTCCCTTCCTTCCTATCTATGGGGTGATGCTATTCTCACTGTAGCTCATCTCATCAACTGAATGCCTTCCCGTAACCTACACCTTCGAACTACCTTAGAATGTCTCAAAGAATTGCATCCCTCCACCCGTCTCATTTATGATGCCCCCCTTTGGGTGTTTGGGTGCACAACCTATGTTCATAACTATGGTCCTAACCAAACTAAATTCATCCCTTGGGCTTAGATTTGTGTGTTTCTTGGATACTCTCTACACCGAAAAGGTCAAATGCTTTCACCCATCTTCACGTAAATACTTTGTCTCCATGGATGTAACCTTTCTTGAGTATCACCCCTTCTTCCTTGTTAGCCTACTTTAAGAGAGTGTGAGTGAAGAGTCTAACTATGTGGTTCCCTTAGAGTCTACCTATCCTACTTTGGTTACTTTACTTGACCCAAATTCTCACACTACAATCCTACCTACAGACTAAGTTCTTTGGGAAACCTACTATAAGAGGAATCTTAGAAAGGAAGTTGGTCTCCTGCTATTCAATCGGCTCCAACCCAGGATTATGAACCTTTATGGATCAAGGTGTGACTCATTCCATTGACTCACGTATTAATAATAGAATGAGTGAGAATGACAGGTCTTAGACGTATTCCACTAATGCACATATCGACAGTAAGGTGGGTGAGAATGAGGAGTTTGAAAATATCTAGTCCGATATAGTTGTCCCTGAAGATATGGTTGAGAAGGGCAGTGTTGATGAGGTCATTGCAGATAGAGAGGACAAGATTGAAGAGAATAAGGTTGTTGCAGAATTTATCGAAAATGAAACCAAGTTGGACCATCCAGGATACATCAGTAAGTGCGTTCCTCCTCTGGATTTTCCTATTGCACTGAGGAAAGGCATCAGGTCTTGTACAAAGCACTCTATTTCTAACTATGTTTCGTTCTAGAATCTCTCACCCTAGTTCAGAGCCTTCACTACCAACGTTGACTCTACTACAATACCCAAGAATATCCACCGTGCCTTAGAGTGCCCTGAGTGGAAGTCTGTTGTCATTGAAGGAATGAGAGCCGTGGAAAAGACTAAAACTTGGGGTCTCTGCACACTCCCCAAGGGACAAAAGACTGTGGGATGCAAACTGGTGTTTCCACTGAAGTACAGAGTAGATGGTATCCTTGACAAACATAAAGTCAGGTTAGTTGTAAAAGGTTCACGCAGACTTATGGGTTGACTCTCCTATTGCAAAGTTAAACATTGTTAGTCTTGTTAGTTGTTGTAAATAAAGACTGACCCCTATATCAATTTGATGTTAAGAATTGATTTAAAAGAGAAAGTGTATATGAGTCCTCCTCCAGGGTTTGAAGCTCATTTTGCTAATCAAGTTCGCAAGCTTCGAAAGTCTTTGTATGGGTTGAATCAGTCACTGAGAGCTTGGTTTGATAGGTTACCACTTTTGTCAAGTCTCAAGGATACAATCAAGGGCACTCCAATCACACTTTGTTTATATAAATCTCCAAGACTTGTAAAATTGCAGTATTGATTGTCTATGTTGATGACATTGTGCTATTTAGTAATGATACCGTTGAGATCACCCATCTAACAAAAAAGAAGATGGAGAATGAGTTTGAAATTAAAGACTTGGGAAATCTGAAGTACTACCTTGAGATGGAGGTTGCTAGGTCTAGAAAGGCCATCTCCGTGTCTCAGAGAAAGTATACCATTGATTTATTAGCTGAAACCGGTATGACAGGATGTTGTTCTCTGCTTATACACCCATTGAATTCAATGTCAAACTTTAAGATTTAGGTGACATATCAATGCCTTATGGGAAAGCTGATTTACTGTCTCACACTAGACCTGACATCTCCTATGCTGTTAGTACTGTCAGTTAGTTCATGCAGGCTTCTTATGAAGACCACATGGAGGTAGTTAATAGAATTCCGAAGTATTTAAAAGTTGTTGGTAATGTATAATTAAATTTTTCTTCAACCACTAGCTTAAGCTTTTGGATGAATTGGTGGTTTAATAAGCAACTCTTAGTAAAGGGATGAAGTTTAGGATGACTGACAGAAGGTGTATGGTGGCCTATGTTGACTATGACTGAGCAGGTTCTGTTGTTGATAGAAAATCCACCTCGAGATATTGCAGCTTTGTGTGGGGCAATCTTGTTACTTGGAAAAGTAAGAAGCAAGGAGTTGTAGCTCGAAGCAGCGTTGAAGCAGAATGTAGGGCTATGAGTTTGAGAATCTGTGAGGAAATCTTTCTCTATAAGGTGTTGTCTGATCTTTGTCAGGAATGTGAGGTGCCTATGAAACTATTCTGCGATACAAGGCAACTATTAGCATATTGTCAATAACTCGGTCCAACACGACAAAACCAAACATGTGGAGATTGACACACTTTATCAAAGAGAGGTTGGAGTGGTAGCATTTGCATCCCTTACATACCCTCGAGCCAACAGTTGGGTCTTTCCGACATTTACGTCCCAACTTGAGGGGGAGTGTTAGAAATAGTGGGCTTGGGTCATGTTGAAAGCCCAAGGGTATTCGAGATTTACTTTGTCCTAATTTTTTATTATTTTAGTTACATTTGTGTTGCCTACAAATATTTTTCCCCTTGTACCTTTATTAAAATAAGAAATTTCAGCATCGTGGTTTTTCTCCCTCTACTAGGGTTTCCACGTAAATTTGTGTTTGTTCTACATCTCTACTTTCAATAATATGCATACCATTTTGTTCAATGACCTCACTCTGTTTCTAAAATGATGTGGGAAGGTTTATCTTTGTGGGATAAAAAATGGGTAGTTACTGTGGGCAGGTATGCTTTAAAAAAAATTCCTGTATTGTTCTTCTCTTTTGGCCAAAAACAGTGGTTTCAGTCCATTTGTAACATCTAATTTTGTGCGCTGTTATTCATTTGAAAATATTCATCCTGTGCACAAGAAAACATTGACATAAGATTAAAAAAAATTGAATGATTATTGCCTATTATTTGGTTTGGTTGATGTTCATTCATTTTAGTCTGATTGAAATGCATATTTCATGTTTCTTGTGAAGCTAGGCCAGAAAGTTTCAGTATCTATGGAACTGCAGAGACTACTTGAACAAGGTTGGCGGATATAATCCCATTCATTTTAAGCATGAAAACAAAGTAGACCATTGGAAACTGCCTAACTTAAATGATATTGCAATTGACAGGCCTTGCGTATTATACTTGCTACTGATGGGGATACGCCTGGTCAAGCTTTAGCAGAGGAGATTGCACGCCGTGTTGGGAAGGAAAGGTTTTCTTTTGTCTTTTTCTAACTACAAACCATTATCTTTTGGGATTAGATGCGGAGTAGTTTGGCTAGTAACAGACATTTTCATTTTCTATTTTTAGATGTTGGAGGGTCAAATGGCCAAAAAAGGATGAGGTCGATCATTTCAAAGATGCAAATGAGGTTGGAATTATTGATCAGTTATCGTATTGCTGTACATTTGTTTATTTACCTTTGATAAATAAAATTAACGTTCTCAGGATGTCTATATTTTCTTGCTCATGACGAAGTTAATGATTATTATATGTAATGCTTGATGGGAAATGTTGTAGATATTTCTGCTAAACTTTTTCCTTTCCGTAGACAAAGCTTGCTTTGGGCAATGATCCGAAGGATGCATTTGGCACGGATAATTGAGTTGAATTTGGTTGATAATAATTGTTTTTTGGTAATAATTGTACGTGTTTTGGGACGTATAATTGAGTTGAATTTTGTTGATAATAATTGTTTTTTGGTAATAATTGTACGTGTTTTGGGTGCACAGTTGAGTTGGGTTGATAGTAATTGTATTCATGCAAGTGGCTGCTGCTAAAAGCTAGAAAAGCTAAATTTTGTTAATGTGACCAATAAATGATTGTCAATGTTTGCATGGAATGGGATCACTTCTCTTCTAAATTGTGTTTAGGTTTTGATGTACTTGGGCCCTGAGGCCCTGAAGGAAGTTGTTGACAACGCAGAGTTGTATCCTATAAGTGGATTATTTCGCTTCAAAGACTACTTCCACGAGATTGATGCATATTATCACAAAAAATTTGGAAATGAGTTTGGTGTGCCGACTGGATGGAGGTGTCTCAATGATTTGTACAATGTGAGTTCAAACTAG

mRNA sequence

TGTCGTCGGAAGCAAGCCGCCGAAGAAAGTTGGGGTGGTTTGCAGCAACCAAAACCCACTCTTCGCACACCCCTAACTCCTTCCTCTCTTTACCAATATTCATTTCAATGCCCCTGCCGGTTTCTTCAGTCTCTACCTACCTACTATGTTATTTTTAACTCTGTAGTGTAGACTTGAAATGGTGGCCATACTCAGCTGATCACCTTAACCCTACCAATAGCCAGAATGCGTTTTCTTCATCACAATCACCGTCTCTATAACCCCTTTTCAAAACTCTCTTCATTTTCCTCACCATTTCGTCTAATGGGTTCCTTTCCTTTATGCAAATCAACCTCTCTGGTTTTCCTGTCACACCTTTCTTCTTCTTTTTCGCAGAAGTATTTCCTGTACAGAAGCATTTCTCTTCTCCATGGTTCATTTCCTGTACGACCCTTGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAGACCTCCAGCCCTTTTGGGGAATCCACCAGACAAGGCTTCAATCTCCACTCGATTGAATATTCTAAGAAAAAAATTGCAGGATCTTGACATTGATATCGAAGCTTGTGTTCCTGGGCAGTTTTCCAGTTTGCTTTGTCCAATGTGTAAAGGTGGTGATACAAAGGAACGATCCTTCTCCCTAAATATCTCAGAAGATGGGGAGGCTGCTGTTTGGAATTGTTTTCGTGGAAAATGTGGTTGGAAAGGCCATACTCTGgcctttactgatggtcggtcatcatataaagatttaggacaagttgcacttaagcagaacatacggaaaattacagtggagagtctacaacttgaaccactgtgcgatgagctggttgattatttcgcggagcgattgatatccaagcaaacattgttaagaaattcagttatgcagaaaagatccaataatcagattgctgttgcatttacatattatcgaggtggagcattaattagttgcaagtatcgtgatgccaagaaaaggttctggcaggaggccaaaactgagaaaatattttatggattggatgacatagatggtgcaagtgatatcatcatagttgaaggggagatagacaagctctcaatggcagaagctggtatccataattgcgtgagtgttcctgatggtgcaccaccatcagtttccaaaaaaaacgtacctcctgcacatcagGCCAGAAAGTTTCAGTATCTATGGAACTGCAGAGACTACTTGAACAAGGCCTTGCGTATTATACTTGCTACTGATGGGGATACGCCTGGTCAAGCTTTAGCAGAGGAGATTGCACGCCGTGTTGGGAAGGAAAGATGTTGGAGGGTCAAATGGCCAAAAAAGGATGAGGTCGATCATTTCAAAGATGCAAATGAGGTTTTGATGTACTTGGGCCCTGAGGCCCTGAAGGAAGTTGTTGACAACGCAGAGTTGTATCCTATAAGTGGATTATTTCGCTTCAAAGACTACTTCCACGAGATTGATGCATATTATCACAAAAAATTTGGAAATGAGTTTGGTGTGCCGACTGGATGGAGGTGTCTCAATGATTTGTACAATGTGAGTTCAAACTAG

Coding sequence (CDS)

ATGCGTTTTCTTCATCACAATCACCGTCTCTATAACCCCTTTTCAAAACTCTCTTCATTTTCCTCACCATTTCGTCTAATGGGTTCCTTTCCTTTATGCAAATCAACCTCTCTGGTTTTCCTGTCACACCTTTCTTCTTCTTTTTCGCAGAAGTATTTCCTGTACAGAAGCATTTCTCTTCTCCATGGTTCATTTCCTGTACGACCCTTGTCCCTTGTGAAACCCTTTGCCATGAAACCAAATGGGGTTTCTTCTTTTACTTCTCATGCCAATGTTCCCAGACCTCCAGCCCTTTTGGGGAATCCACCAGACAAGGCTTCAATCTCCACTCGATTGAATATTCTAAGAAAAAAATTGCAGGATCTTGACATTGATATCGAAGCTTGTGTTCCTGGGCAGTTTTCCAGTTTGCTTTGTCCAATGTGTAAAGGTGGTGATACAAAGGAACGATCCTTCTCCCTAAATATCTCAGAAGATGGGGAGGCTGCTGTTTGGAATTGTTTTCGTGGAAAATGTGGTTGGAAAGGCCATACTCTGGCCTTTACTGATGGTCGGTCATCATATAAAGATTTAGGACAAGTTGCACTTAAGCAGAACATACGGAAAATTACAGTGGAGAGTCTACAACTTGAACCACTGTGCGATGAGCTGGTTGATTATTTCGCGGAGCGATTGATATCCAAGCAAACATTGTTAAGAAATTCAGTTATGCAGAAAAGATCCAATAATCAGATTGCTGTTGCATTTACATATTATCGAGGTGGAGCATTAATTAGTTGCAAGTATCGTGATGCCAAGAAAAGGTTCTGGCAGGAGGCCAAAACTGAGAAAATATTTTATGGATTGGATGACATAGATGGTGCAAGTGATATCATCATAGTTGAAGGGGAGATAGACAAGCTCTCAATGGCAGAAGCTGGTATCCATAATTGCGTGAGTGTTCCTGATGGTGCACCACCATCAGTTTCCAAAAAAAACGTACCTCCTGCACATCAGGCCAGAAAGTTTCAGTATCTATGGAACTGCAGAGACTACTTGAACAAGGCCTTGCGTATTATACTTGCTACTGATGGGGATACGCCTGGTCAAGCTTTAGCAGAGGAGATTGCACGCCGTGTTGGGAAGGAAAGATGTTGGAGGGTCAAATGGCCAAAAAAGGATGAGGTCGATCATTTCAAAGATGCAAATGAGGTTTTGATGTACTTGGGCCCTGAGGCCCTGAAGGAAGTTGTTGACAACGCAGAGTTGTATCCTATAAGTGGATTATTTCGCTTCAAAGACTACTTCCACGAGATTGATGCATATTATCACAAAAAATTTGGAAATGAGTTTGGTGTGCCGACTGGATGGAGGTGTCTCAATGATTTGTACAATGTGAGTTCAAACTAG

Protein sequence

MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNVSSN*

Homology

[Close]

BLAST of Cucsa.167410 vs. Swiss-Prot
Match: TWIH_ARATH (Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At1g30680 PE=1 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 3.6e-127
Identity = 248/463 (53.56%), Postives = 313/463 (67.60%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60
           MRFL    +++  F KLS   S   LMGS    +   L   +   SS S  Y   R +S 
Sbjct: 1   MRFLLRLPQIH--FRKLSCSMSV--LMGSKQFLEFCLLPSFASYPSSPS--YSSSRQVSS 60

Query: 61  LHGSF-PV---RPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILR 120
           +   F PV   RP+S   P+  + NG+SS+ S   VP P        DK  + +RL  LR
Sbjct: 61  VSRRFRPVLASRPVSKNSPYYQRTNGLSSYNSIPRVPTPVDTEVEA-DKRVVLSRLVTLR 120

Query: 121 KKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKG 180
           +KL +  +D E C PGQ S L+CP C+GG++ E+S SL I+ DG +A WNCFRGKCG KG
Sbjct: 121 RKLAEQGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKG 180

Query: 181 HTLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSV 240
              A  DG  +  D     +++  RKITVE ++LEPLCDE+ DYFA R IS++TL RN V
Sbjct: 181 GVRA--DGGLASAD----PIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRV 240

Query: 241 MQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEG 300
           MQKR  ++I +AFTY++ G L+SCKYR   K F+QE KT +I YGLDDI+  S++IIVEG
Sbjct: 241 MQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEG 300

Query: 301 EIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILAT 360
           EIDKL+M EAG  NCVSVPDGAP  VS K +P   +  K+++LWNC DYL KA RI++AT
Sbjct: 301 EIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIAT 360

Query: 361 DGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAEL 420
           DGD PGQA+AEEIARR+GKERCWRVKWPKK E +HFKDANEVLM  GP  LKE + +AE 
Sbjct: 361 DGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEP 420

Query: 421 YPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           YPI GLF FKD+F EIDAYY +  G+E+GV TGW+ L++LY+V
Sbjct: 421 YPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSV 450

[Close]

BLAST of Cucsa.167410 vs. Swiss-Prot
Match: PRIH_ARATH (Primase homolog protein OS=Arabidopsis thaliana GN=At1g30660 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 8.6e-97
Identity = 182/316 (57.59%), Postives = 226/316 (71.52%), Query Frame = 1


Query: 105 KASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAV 164
           K  + ++L  L +KL +  ID + C PG  S L+CP C+ GD+ E+S +L I  DG +A 
Sbjct: 28  KKVVLSKLVTLMRKLSEQGIDAQNCPPGVRSCLICPKCEVGDSGEKSLTLYIYPDGSSAK 87

Query: 165 WNCFRGKCGWKGHTLAFTDGRSSYKD-LGQVALKQNIRKITVESLQLEPLCDELVDYFAE 224
           W C R KCG KG  +   DG+   KD +G+V      RKITVES++LEPLCDE+ D+FA 
Sbjct: 88  WTC-RRKCGLKG--VLQVDGKLVSKDPIGKVE-----RKITVESIKLEPLCDEIQDFFAA 147

Query: 225 RLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLD 284
           R IS +TL RN VMQKR +++I +AFTY++ G L+SCKYR   K+F QE  T KI YGLD
Sbjct: 148 RAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLD 207

Query: 285 DIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCR 344
           DI+  S+IIIVEGE DKL+M EAG  NCVSVPDGAP +VS K +P   +   F+Y+WNC 
Sbjct: 208 DIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCN 267

Query: 345 DYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLG 404
           DYL KA RI++ATDGD PGQALAEE+ARR+GKERCW VKWPKK E +HFKDANEVLM  G
Sbjct: 268 DYLKKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKG 327

Query: 405 PEALKEVVDNAELYPI 420
           P  LKE + NAE YP+
Sbjct: 328 PHLLKEAILNAEPYPL 335

[Close]

BLAST of Cucsa.167410 vs. TrEMBL
Match: A0A0A0LYM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G541890 PE=4 SV=1)

HSP 1 Score: 874.0 bits (2257), Expect = 8.0e-251
Identity = 427/462 (92.42%), Postives = 443/462 (95.89%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSF---SQKYFLYRS 60
           MRFLH+NH LY PFSKLSSFSSP  LMGSFPLCKSTSLVFLSHLSSS    SQKYFLYRS
Sbjct: 1   MRFLHNNHCLYTPFSKLSSFSSPSCLMGSFPLCKSTSLVFLSHLSSSSSSSSQKYFLYRS 60

Query: 61  ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRK 120
           ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALL NPPDKAS STRLNILRK
Sbjct: 61  ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLENPPDKASSSTRLNILRK 120

Query: 121 KLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGH 180
           KLQDLDIDIEACVPGQF SLLCPMCKGGD++ERSFSLNISEDG AAVWNCFRGKCGWKGH
Sbjct: 121 KLQDLDIDIEACVPGQFYSLLCPMCKGGDSEERSFSLNISEDGGAAVWNCFRGKCGWKGH 180

Query: 181 TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM 240
           TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM
Sbjct: 181 TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM 240

Query: 241 QKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGE 300
           QKRS+NQIAVAFTYYRGGALISCKYRDA K+FWQE  TE+IFYG+DDIDGASDIIIVEGE
Sbjct: 241 QKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDIDGASDIIIVEGE 300

Query: 301 IDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATD 360
           +DKLSMAEAGIHNCVSVPDGAP SVS+K+VPPA + +KFQ+LWNC+DYLNKA RIILATD
Sbjct: 301 MDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKASRIILATD 360

Query: 361 GDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELY 420
           GDTPGQALAEEIARRVG+ERCWRVKWPKK+EVDHFKDANEVLMYLGPEALKEVVDNAELY
Sbjct: 361 GDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPEALKEVVDNAELY 420

Query: 421 PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV
Sbjct: 421 PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 462

[Close]

BLAST of Cucsa.167410 vs. TrEMBL
Match: W9RPH9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026953 PE=4 SV=1)

HSP 1 Score: 530.8 bits (1366), Expect = 1.7e-147
Identity = 264/434 (60.83%), Postives = 330/434 (76.04%), Query Frame = 1


Query: 27  MGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISLLHGSFPVRPLSLVKPFAM-KPNGVSS 86
           MGS    KST   F S+  +  S +  L  +  L   +FP +P S  +P  + K NG SS
Sbjct: 1   MGSKQFLKST---FFSNPLTPASHRR-LSNTRKLPFSAFPSKPTSRTQPCCLIKTNGYSS 60

Query: 87  FTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGG 146
             S A+ PR   +L +P +K +  ++  IL++KL+DL ++ +  VPGQF+ L+CPMC GG
Sbjct: 61  -VSEASDPRA-VVLEDPEEKNA--SQFRILKQKLEDLGLECDISVPGQFNHLICPMCNGG 120

Query: 147 DTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLAFTDGRSSYKDLGQVALKQNIRKITV 206
           D +ERS SL I +DG +A+W CFR KCGW+G T AF + + +Y+   ++A  + IR+IT+
Sbjct: 121 DQEERSLSLFIEQDGSSALWVCFRAKCGWRGSTRAFAESKPAYERPNKIARIKKIREITI 180

Query: 207 ESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDA 266
           E L LEP CDE+V YF+ER+ISK+T+ RN+VMQKR ++Q A+AFTY+R G LISCKYRD 
Sbjct: 181 EDLGLEPPCDEIVAYFSERMISKETMQRNAVMQKRYDDQFAIAFTYWRNGNLISCKYRDI 240

Query: 267 KKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKK 326
            K+FWQEA TEKIFYGLDDI  ASDIIIVEGE+DKL+M EAG  NCVSVPDGAPP VS+K
Sbjct: 241 NKKFWQEADTEKIFYGLDDIKEASDIIIVEGEMDKLAMEEAGFRNCVSVPDGAPPCVSEK 300

Query: 327 NVPPAHQARKFQYLWNCRDYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPK 386
           ++PP     K+QYLWNC++YL KA RIILATDGD PGQALAEE+ARRVG+ERCWRVKWPK
Sbjct: 301 DLPPKETDTKYQYLWNCKEYLKKASRIILATDGDVPGQALAEELARRVGRERCWRVKWPK 360

Query: 387 KDEVDHFKDANEVLMYLGPEALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFG 446
           K+EVDHFKDANEVLMY+GP+ LKEV++NAELYPI GLF FKDYF EIDAYY++ FG+EFG
Sbjct: 361 KNEVDHFKDANEVLMYMGPDVLKEVIENAELYPIRGLFNFKDYFSEIDAYYYRTFGDEFG 420

Query: 447 VPTGWRCLNDLYNV 460
             TGWR LN LYNV
Sbjct: 421 ASTGWRSLNHLYNV 426

[Close]

BLAST of Cucsa.167410 vs. TrEMBL
Match: A0A059CFW7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01628 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.3e-144
Identity = 260/420 (61.90%), Postives = 313/420 (74.52%), Query Frame = 1


Query: 41  LSHLSSSFSQKYFLYRSISLLHGSFP-VRPLSLVKPFAMKPNGVSSFTSHANVPRPPALL 100
           LS  SSS S     +R    LH S    R  S + P  +K NGV     H+++PRP  L 
Sbjct: 53  LSSSSSSSSLSRVRFRGAYGLHFSCARSRAGSRMNPSCLKANGVPH-RPHSSIPRPVQLE 112

Query: 101 GNPPDKASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISED 160
           G  P    I T L +L+ +L++L ID++ C+PGQ+ SLLCPMCKGG + ERS S+ +S D
Sbjct: 113 G--PVGRGIETPLKVLKMRLEELGIDMQTCLPGQYHSLLCPMCKGGRSMERSLSIFVSPD 172

Query: 161 GEAAVWNCFRGKCGWKGHTLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVD 220
           G +AVW CFRG CGWKG T A    RSSY    Q +  + IR+I+ ESL LEPLC+ELV 
Sbjct: 173 GGSAVWTCFRGSCGWKGSTRAAAKPRSSYATSNQTSKVKTIREISEESLGLEPLCNELVA 232

Query: 221 YFAERLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIF 280
           YFAERLIS +TL RN+VMQK+  NQI +AFTY R G L+SCKYRD KK+FWQEA TEKIF
Sbjct: 233 YFAERLISAETLRRNAVMQKKCENQIVIAFTYRREGKLVSCKYRDVKKKFWQEAHTEKIF 292

Query: 281 YGLDDIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYL 340
           YGLDDI G S+IIIVEGE+DKL+M EAG  NCVSVPDGAPPS S K++PP  Q  K+QYL
Sbjct: 293 YGLDDIKGKSEIIIVEGEMDKLAMEEAGFRNCVSVPDGAPPSTSDKDLPPEGQDIKYQYL 352

Query: 341 WNCRDYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVL 400
           WNC+DYL +A RIILATDGD PGQALAEE+ARR+G+ERCWRVKWPKK++ ++FKDANEVL
Sbjct: 353 WNCKDYLKEASRIILATDGDKPGQALAEELARRLGRERCWRVKWPKKNDSEYFKDANEVL 412

Query: 401 MYLGPEALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           MY+GP  L+EV+D+AELYPI GLF FKD+F EI+ YYH+  G EFGV TGW+ LN LYNV
Sbjct: 413 MYVGPGVLREVIDDAELYPIRGLFTFKDFFDEINGYYHRTLGYEFGVSTGWKSLNHLYNV 469

[Close]

BLAST of Cucsa.167410 vs. TrEMBL
Match: A0A059CGG0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01628 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 1.3e-144
Identity = 260/420 (61.90%), Postives = 313/420 (74.52%), Query Frame = 1


Query: 41  LSHLSSSFSQKYFLYRSISLLHGSFP-VRPLSLVKPFAMKPNGVSSFTSHANVPRPPALL 100
           LS  SSS S     +R    LH S    R  S + P  +K NGV     H+++PRP  L 
Sbjct: 53  LSSSSSSSSLSRVRFRGAYGLHFSCARSRAGSRMNPSCLKANGVPH-RPHSSIPRPVQLE 112

Query: 101 GNPPDKASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISED 160
           G  P    I T L +L+ +L++L ID++ C+PGQ+ SLLCPMCKGG + ERS S+ +S D
Sbjct: 113 G--PVGRGIETPLKVLKMRLEELGIDMQTCLPGQYHSLLCPMCKGGRSMERSLSIFVSPD 172

Query: 161 GEAAVWNCFRGKCGWKGHTLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVD 220
           G +AVW CFRG CGWKG T A    RSSY    Q +  + IR+I+ ESL LEPLC+ELV 
Sbjct: 173 GGSAVWTCFRGSCGWKGSTRAAAKPRSSYATSNQTSKVKTIREISEESLGLEPLCNELVA 232

Query: 221 YFAERLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIF 280
           YFAERLIS +TL RN+VMQK+  NQI +AFTY R G L+SCKYRD KK+FWQEA TEKIF
Sbjct: 233 YFAERLISAETLRRNAVMQKKCENQIVIAFTYRREGKLVSCKYRDVKKKFWQEAHTEKIF 292

Query: 281 YGLDDIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYL 340
           YGLDDI G S+IIIVEGE+DKL+M EAG  NCVSVPDGAPPS S K++PP  Q  K+QYL
Sbjct: 293 YGLDDIKGKSEIIIVEGEMDKLAMEEAGFRNCVSVPDGAPPSTSDKDLPPEGQDIKYQYL 352

Query: 341 WNCRDYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVL 400
           WNC+DYL +A RIILATDGD PGQALAEE+ARR+G+ERCWRVKWPKK++ ++FKDANEVL
Sbjct: 353 WNCKDYLKEASRIILATDGDKPGQALAEELARRLGRERCWRVKWPKKNDSEYFKDANEVL 412

Query: 401 MYLGPEALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           MY+GP  L+EV+D+AELYPI GLF FKD+F EI+ YYH+  G EFGV TGW+ LN LYNV
Sbjct: 413 MYVGPGVLREVIDDAELYPIRGLFTFKDFFDEINGYYHRTLGYEFGVSTGWKSLNHLYNV 469

[Close]

BLAST of Cucsa.167410 vs. TrEMBL
Match: A0A061GF76_THECC (Toprim domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_027034 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 8.6e-144
Identity = 253/392 (64.54%), Postives = 302/392 (77.04%), Query Frame = 1


Query: 68  RPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQDLDIDIE 127
           +P S     +++ NG SS  S ANV  P        D+      L IL+ KL+ L IDI 
Sbjct: 65  KPYSKNHSLSLRTNGFSSIPS-ANVSAP-VYSKELEDRPLNMRSLEILKHKLKQLGIDIS 124

Query: 128 ACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLAFTDGRSS 187
           ACVPG+ + LLCP C GG+++E S SL I++DG +A W CFR KCGWKG T AF DG+ S
Sbjct: 125 ACVPGRENRLLCPSCNGGESEEISLSLFINQDGSSASWMCFRAKCGWKGITKAFADGKPS 184

Query: 188 YKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKRSNNQIAV 247
           Y +L +V   +  R+ITVESLQLEPLC++L+ YFAER+IS +TL RN+VMQK+S  +IA+
Sbjct: 185 YANLSRVNKVKVKREITVESLQLEPLCNQLIAYFAERMISAETLKRNAVMQKKSGEEIAI 244

Query: 248 AFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDKLSMAEAG 307
           AF Y+R G+L++CKYRD  KRFWQE  TEKIFYGLDDI+ ASDIIIVEGEIDKL+M EAG
Sbjct: 245 AFPYWRKGSLVNCKYRDIAKRFWQEKDTEKIFYGLDDIEDASDIIIVEGEIDKLAMEEAG 304

Query: 308 IHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDTPGQALAE 367
             NCVSVPDGAPPSVS K VP   Q  K+QYLWNC++YL KA RIILATDGD PGQALAE
Sbjct: 305 FRNCVSVPDGAPPSVSSKEVPAEEQDTKYQYLWNCKEYLKKASRIILATDGDPPGQALAE 364

Query: 368 EIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPISGLFRFKD 427
           E+ARR+G+ERCWRVKWPKK+EVDHFKDANEVLMYLGP  LK+V++NAELYPI GLF F+D
Sbjct: 365 ELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPSVLKDVIENAELYPIRGLFNFRD 424

Query: 428 YFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           +F EID YYH+  G EFGVPTGWR L+ LYNV
Sbjct: 425 FFDEIDRYYHRTLGYEFGVPTGWRALDGLYNV 454

[Close]

BLAST of Cucsa.167410 vs. TAIR10
Match: AT1G30680.1 (AT1G30680.1 toprim domain-containing protein)

HSP 1 Score: 456.4 bits (1173), Expect = 2.0e-128
Identity = 248/463 (53.56%), Postives = 313/463 (67.60%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60
           MRFL    +++  F KLS   S   LMGS    +   L   +   SS S  Y   R +S 
Sbjct: 1   MRFLLRLPQIH--FRKLSCSMSV--LMGSKQFLEFCLLPSFASYPSSPS--YSSSRQVSS 60

Query: 61  LHGSF-PV---RPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILR 120
           +   F PV   RP+S   P+  + NG+SS+ S   VP P        DK  + +RL  LR
Sbjct: 61  VSRRFRPVLASRPVSKNSPYYQRTNGLSSYNSIPRVPTPVDTEVEA-DKRVVLSRLVTLR 120

Query: 121 KKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKG 180
           +KL +  +D E C PGQ S L+CP C+GG++ E+S SL I+ DG +A WNCFRGKCG KG
Sbjct: 121 RKLAEQGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCFRGKCGLKG 180

Query: 181 HTLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSV 240
              A  DG  +  D     +++  RKITVE ++LEPLCDE+ DYFA R IS++TL RN V
Sbjct: 181 GVRA--DGGLASAD----PIEKVERKITVEGIELEPLCDEIQDYFAARAISRKTLERNRV 240

Query: 241 MQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEG 300
           MQKR  ++I +AFTY++ G L+SCKYR   K F+QE KT +I YGLDDI+  S++IIVEG
Sbjct: 241 MQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDIEKTSEVIIVEG 300

Query: 301 EIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILAT 360
           EIDKL+M EAG  NCVSVPDGAP  VS K +P   +  K+++LWNC DYL KA RI++AT
Sbjct: 301 EIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDYLKKASRIVIAT 360

Query: 361 DGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAEL 420
           DGD PGQA+AEEIARR+GKERCWRVKWPKK E +HFKDANEVLM  GP  LKE + +AE 
Sbjct: 361 DGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPHLLKEAILDAEP 420

Query: 421 YPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           YPI GLF FKD+F EIDAYY +  G+E+GV TGW+ L++LY+V
Sbjct: 421 YPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSV 450

[Close]

BLAST of Cucsa.167410 vs. TAIR10
Match: AT1G30660.1 (AT1G30660.1 nucleic acid binding;nucleic acid binding)

HSP 1 Score: 355.5 bits (911), Expect = 4.9e-98
Identity = 182/316 (57.59%), Postives = 226/316 (71.52%), Query Frame = 1


Query: 105 KASISTRLNILRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAV 164
           K  + ++L  L +KL +  ID + C PG  S L+CP C+ GD+ E+S +L I  DG +A 
Sbjct: 28  KKVVLSKLVTLMRKLSEQGIDAQNCPPGVRSCLICPKCEVGDSGEKSLTLYIYPDGSSAK 87

Query: 165 WNCFRGKCGWKGHTLAFTDGRSSYKD-LGQVALKQNIRKITVESLQLEPLCDELVDYFAE 224
           W C R KCG KG  +   DG+   KD +G+V      RKITVES++LEPLCDE+ D+FA 
Sbjct: 88  WTC-RRKCGLKG--VLQVDGKLVSKDPIGKVE-----RKITVESIKLEPLCDEIQDFFAA 147

Query: 225 RLISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLD 284
           R IS +TL RN VMQKR +++I +AFTY++ G L+SCKYR   K+F QE  T KI YGLD
Sbjct: 148 RAISGKTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLD 207

Query: 285 DIDGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCR 344
           DI+  S+IIIVEGE DKL+M EAG  NCVSVPDGAP +VS K +P   +   F+Y+WNC 
Sbjct: 208 DIEETSEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCN 267

Query: 345 DYLNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLG 404
           DYL KA RI++ATDGD PGQALAEE+ARR+GKERCW VKWPKK E +HFKDANEVLM  G
Sbjct: 268 DYLKKASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKG 327

Query: 405 PEALKEVVDNAELYPI 420
           P  LKE + NAE YP+
Sbjct: 328 PHLLKEAILNAEPYPL 335

[Close]

BLAST of Cucsa.167410 vs. NCBI nr
Match: gi|778662022|ref|XP_011659237.1| (PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 940.6 bits (2430), Expect = 1.0e-270
Identity = 457/459 (99.56%), Postives = 457/459 (99.56%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60
           MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL
Sbjct: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60

Query: 61  LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ 120
           LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ
Sbjct: 61  LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ 120

Query: 121 DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA 180
           DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA
Sbjct: 121 DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA 180

Query: 181 FTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR 240
           F DGRSSYK LGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR
Sbjct: 181 FADGRSSYKHLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR 240

Query: 241 SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK 300
           SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK
Sbjct: 241 SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK 300

Query: 301 LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT 360
           LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT
Sbjct: 301 LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT 360

Query: 361 PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS 420
           PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS
Sbjct: 361 PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS 420

Query: 421 GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV
Sbjct: 421 GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 459

[Close]

BLAST of Cucsa.167410 vs. NCBI nr
Match: gi|778662024|ref|XP_011659240.1| (PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 940.6 bits (2430), Expect = 1.0e-270
Identity = 457/459 (99.56%), Postives = 457/459 (99.56%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60
           MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL
Sbjct: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSFSQKYFLYRSISL 60

Query: 61  LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ 120
           LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ
Sbjct: 61  LHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRKKLQ 120

Query: 121 DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA 180
           DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA
Sbjct: 121 DLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGHTLA 180

Query: 181 FTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR 240
           F DGRSSYK LGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR
Sbjct: 181 FADGRSSYKHLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVMQKR 240

Query: 241 SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK 300
           SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK
Sbjct: 241 SNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGEIDK 300

Query: 301 LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT 360
           LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT
Sbjct: 301 LSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATDGDT 360

Query: 361 PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS 420
           PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS
Sbjct: 361 PGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELYPIS 420

Query: 421 GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV
Sbjct: 421 GLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 459

[Close]

BLAST of Cucsa.167410 vs. NCBI nr
Match: gi|778662016|ref|XP_011659233.1| (PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 874.0 bits (2257), Expect = 1.2e-250
Identity = 427/462 (92.42%), Postives = 443/462 (95.89%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSSF---SQKYFLYRS 60
           MRFLH+NH LY PFSKLSSFSSP  LMGSFPLCKSTSLVFLSHLSSS    SQKYFLYRS
Sbjct: 1   MRFLHNNHCLYTPFSKLSSFSSPSCLMGSFPLCKSTSLVFLSHLSSSSSSSSQKYFLYRS 60

Query: 61  ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNILRK 120
           ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALL NPPDKAS STRLNILRK
Sbjct: 61  ISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLENPPDKASSSTRLNILRK 120

Query: 121 KLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGWKGH 180
           KLQDLDIDIEACVPGQF SLLCPMCKGGD++ERSFSLNISEDG AAVWNCFRGKCGWKGH
Sbjct: 121 KLQDLDIDIEACVPGQFYSLLCPMCKGGDSEERSFSLNISEDGGAAVWNCFRGKCGWKGH 180

Query: 181 TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM 240
           TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM
Sbjct: 181 TLAFTDGRSSYKDLGQVALKQNIRKITVESLQLEPLCDELVDYFAERLISKQTLLRNSVM 240

Query: 241 QKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDIDGASDIIIVEGE 300
           QKRS+NQIAVAFTYYRGGALISCKYRDA K+FWQE  TE+IFYG+DDIDGASDIIIVEGE
Sbjct: 241 QKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDIDGASDIIIVEGE 300

Query: 301 IDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDYLNKALRIILATD 360
           +DKLSMAEAGIHNCVSVPDGAP SVS+K+VPPA + +KFQ+LWNC+DYLNKA RIILATD
Sbjct: 301 MDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKASRIILATD 360

Query: 361 GDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPEALKEVVDNAELY 420
           GDTPGQALAEEIARRVG+ERCWRVKWPKK+EVDHFKDANEVLMYLGPEALKEVVDNAELY
Sbjct: 361 GDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPEALKEVVDNAELY 420

Query: 421 PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV
Sbjct: 421 PISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 462

[Close]

BLAST of Cucsa.167410 vs. NCBI nr
Match: gi|659068706|ref|XP_008445781.1| (PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 814.7 bits (2103), Expect = 8.3e-233
Identity = 401/474 (84.60%), Postives = 426/474 (89.87%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSS------FSQKYFL 60
           MRFLHHN  LYNPFSKLSSFSSPF LMGSFPLCKSTSLVFLSHLSSS      +SQKYFL
Sbjct: 1   MRFLHHNQCLYNPFSKLSSFSSPFCLMGSFPLCKSTSLVFLSHLSSSSSSSSSYSQKYFL 60

Query: 61  YRSISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNI 120
           YRSISLLHGSFPVRP SLVKPFAMKPNG SSFTSHANVPRPPA   NP DKA  ST LNI
Sbjct: 61  YRSISLLHGSFPVRPTSLVKPFAMKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNI 120

Query: 121 LRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGW 180
           LRKKLQDL IDIEACVPGQFS LLCPMCKGGD+KERSF+L+ISEDG AAVWNCFRGKCGW
Sbjct: 121 LRKKLQDLGIDIEACVPGQFSGLLCPMCKGGDSKERSFALHISEDGGAAVWNCFRGKCGW 180

Query: 181 KGHTLAFTDGRSSYK---------DLGQVALKQNIRKITVESLQLEPLCDELVDYFAERL 240
           KGHTLA  + RSSY+         DLG+VALKQNIRKITVESLQLEPLCD++V YFAERL
Sbjct: 181 KGHTLALAEDRSSYQDLGRVALKQDLGRVALKQNIRKITVESLQLEPLCDQVVAYFAERL 240

Query: 241 ISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDI 300
           ISK+TLLRNSVMQK   +QIA+AFTYYRGGAL+SCKYRD  K+FWQEA TEKIFYG+DDI
Sbjct: 241 ISKETLLRNSVMQKTFGDQIAIAFTYYRGGALVSCKYRDVNKKFWQEANTEKIFYGIDDI 300

Query: 301 DGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDY 360
           +GASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKK+VP A Q +K+Q+LWNC++Y
Sbjct: 301 EGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKDVPSADQDKKYQFLWNCKNY 360

Query: 361 LNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPE 420
           LNKA RIILATDGDTPGQALAEEIARRVG+ERCWRVKWPKK+EVDHFKDANEVLMYLGPE
Sbjct: 361 LNKASRIILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPE 420

Query: 421 ALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           ALKEVVDNAELYPISGLF FKDYFHEIDAYYHKKFG EFGVPTGW  LN+LYNV
Sbjct: 421 ALKEVVDNAELYPISGLFNFKDYFHEIDAYYHKKFGFEFGVPTGWNSLNNLYNV 474

[Close]

BLAST of Cucsa.167410 vs. NCBI nr
Match: gi|659068709|ref|XP_008445786.1| (PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 814.7 bits (2103), Expect = 8.3e-233
Identity = 401/474 (84.60%), Postives = 426/474 (89.87%), Query Frame = 1


Query: 1   MRFLHHNHRLYNPFSKLSSFSSPFRLMGSFPLCKSTSLVFLSHLSSS------FSQKYFL 60
           MRFLHHN  LYNPFSKLSSFSSPF LMGSFPLCKSTSLVFLSHLSSS      +SQKYFL
Sbjct: 1   MRFLHHNQCLYNPFSKLSSFSSPFCLMGSFPLCKSTSLVFLSHLSSSSSSSSSYSQKYFL 60

Query: 61  YRSISLLHGSFPVRPLSLVKPFAMKPNGVSSFTSHANVPRPPALLGNPPDKASISTRLNI 120
           YRSISLLHGSFPVRP SLVKPFAMKPNG SSFTSHANVPRPPA   NP DKA  ST LNI
Sbjct: 61  YRSISLLHGSFPVRPTSLVKPFAMKPNGFSSFTSHANVPRPPAFSENPRDKALSSTLLNI 120

Query: 121 LRKKLQDLDIDIEACVPGQFSSLLCPMCKGGDTKERSFSLNISEDGEAAVWNCFRGKCGW 180
           LRKKLQDL IDIEACVPGQFS LLCPMCKGGD+KERSF+L+ISEDG AAVWNCFRGKCGW
Sbjct: 121 LRKKLQDLGIDIEACVPGQFSGLLCPMCKGGDSKERSFALHISEDGGAAVWNCFRGKCGW 180

Query: 181 KGHTLAFTDGRSSYK---------DLGQVALKQNIRKITVESLQLEPLCDELVDYFAERL 240
           KGHTLA  + RSSY+         DLG+VALKQNIRKITVESLQLEPLCD++V YFAERL
Sbjct: 181 KGHTLALAEDRSSYQDLGRVALKQDLGRVALKQNIRKITVESLQLEPLCDQVVAYFAERL 240

Query: 241 ISKQTLLRNSVMQKRSNNQIAVAFTYYRGGALISCKYRDAKKRFWQEAKTEKIFYGLDDI 300
           ISK+TLLRNSVMQK   +QIA+AFTYYRGGAL+SCKYRD  K+FWQEA TEKIFYG+DDI
Sbjct: 241 ISKETLLRNSVMQKTFGDQIAIAFTYYRGGALVSCKYRDVNKKFWQEANTEKIFYGIDDI 300

Query: 301 DGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKNVPPAHQARKFQYLWNCRDY 360
           +GASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKK+VP A Q +K+Q+LWNC++Y
Sbjct: 301 EGASDIIIVEGEIDKLSMAEAGIHNCVSVPDGAPPSVSKKDVPSADQDKKYQFLWNCKNY 360

Query: 361 LNKALRIILATDGDTPGQALAEEIARRVGKERCWRVKWPKKDEVDHFKDANEVLMYLGPE 420
           LNKA RIILATDGDTPGQALAEEIARRVG+ERCWRVKWPKK+EVDHFKDANEVLMYLGPE
Sbjct: 361 LNKASRIILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPE 420

Query: 421 ALKEVVDNAELYPISGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNV 460
           ALKEVVDNAELYPISGLF FKDYFHEIDAYYHKKFG EFGVPTGW  LN+LYNV
Sbjct: 421 ALKEVVDNAELYPISGLFNFKDYFHEIDAYYHKKFGFEFGVPTGWNSLNNLYNV 474

The following BLAST results are available for this feature:

BLAST of Cucsa.167410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TWIH_ARATH	3.6e-127	53.56	Twinkle homolog protein, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=...	[more]
PRIH_ARATH	8.6e-97	57.59	Primase homolog protein OS=Arabidopsis thaliana GN=At1g30660 PE=3 SV=1	[more]

BLAST of Cucsa.167410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYM8_CUCSA	8.0e-251	92.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G541890 PE=4 SV=1	[more]
W9RPH9_9ROSA	1.7e-147	60.83	Uncharacterized protein OS=Morus notabilis GN=L484_026953 PE=4 SV=1	[more]
A0A059CFW7_EUCGR	1.3e-144	61.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01628 PE=4 SV=1	[more]
A0A059CGG0_EUCGR	1.3e-144	61.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01628 PE=4 SV=1	[more]
A0A061GF76_THECC	8.6e-144	64.54	Toprim domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_027034 PE=4...	[more]

BLAST of Cucsa.167410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30680.1	2.0e-128	53.56	toprim domain-containing protein	[more]
AT1G30660.1	4.9e-98	57.59	nucleic acid binding;nucleic acid binding	[more]

BLAST of Cucsa.167410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778662022\|ref\|XP_011659237.1\|	1.0e-270	99.56	PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like isoform X1 ...	[more]
gi\|778662024\|ref\|XP_011659240.1\|	1.0e-270	99.56	PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial-like isoform X2 ...	[more]
gi\|778662016\|ref\|XP_011659233.1\|	1.2e-250	92.42	PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Cucumis sativus...	[more]
gi\|659068706\|ref\|XP_008445781.1\|	8.3e-233	84.60	PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X1 [Cucu...	[more]
gi\|659068709\|ref\|XP_008445786.1\|	8.3e-233	84.60	PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006171	TOPRIM_domain
IPR027032	Twinkle-like protein

Vocabulary: **Molecular Function**
Term	Definition
GO:0003697	single-stranded DNA binding
GO:0043139	5'-3' DNA helicase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005657	replication fork
molecular_function	GO:0043139	5'-3' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003697	single-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.167410.1	Cucsa.167410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006171	Toprim domain	PFAM	PF13662	Toprim_4	coord: 290..381 score: 3.6
IPR006171	Toprim domain	SMART	SM00493	toprim5	coord: 289..378 score: 3.
IPR006171	Toprim domain	PROFILE	PS50880	TOPRIM	coord: 289..394 score: 9
IPR027032	Twinkle-like protein	PANTHER	PTHR12873	T7-LIKE MITOCHONDRIAL DNA HELICASE	coord: 338..458 score: 6.8E-136coord: 44..320 score: 6.8E
None	No IPR available	GENE3D	G3DSA:3.40.1360.10		coord: 276..417 score: 3.2
None	No IPR available	unknown	SSF56731	DNA primase core	coord: 221..394 score: 1.22

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.167410	Melon (DHL92) v3.6.1	cgymedB290
Cucsa.167410	Silver-seed gourd	carcgyB0462
Cucsa.167410	Silver-seed gourd	carcgyB0517
Cucsa.167410	Cucumber (Chinese Long) v3	cgycucB267
Cucsa.167410	Watermelon (97103) v2	cgywmbB300
Cucsa.167410	Wax gourd	cgywgoB345
Cucsa.167410	Cucurbita maxima (Rimu)	cgycmaB0475
Cucsa.167410	Cucurbita maxima (Rimu)	cgycmaB0476
Cucsa.167410	Cucurbita moschata (Rifu)	cgycmoB0478
Cucsa.167410	Cucurbita moschata (Rifu)	cgycmoB0479
Cucsa.167410	Wild cucumber (PI 183967)	cgycpiB262
Cucsa.167410	Cucumber (Chinese Long) v2	cgycuB255
Cucsa.167410	Melon (DHL92) v3.5.1	cgymeB297
Cucsa.167410	Watermelon (Charleston Gray)	cgywcgB296
Cucsa.167410	Watermelon (97103) v1	cgywmB313
Cucsa.167410	Cucurbita pepo (Zucchini)	cgycpeB0462
Cucsa.167410	Cucurbita pepo (Zucchini)	cgycpeB0463
Cucsa.167410	Bottle gourd (USVL1VR-Ls)	cgylsiB278