Cucsa.164770 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGCTGCAGAAAAAGTTACTCTAAAGACTAAAATTATCTGGTCTAAAGAAGAAGATGAAGAATCTATTGGAAACTCCCGAGCACTAAATGCATTGTACAATGGAGTGGATCAAAATGTTTTTAAGCTAATCAATACTTGCACATCTGCTAAGGAAGCGTGGGATATTCTTGAGGTTTCTTATGAAGGAACTCCCAAAGCTAAAATATCAAAACTTCAGATTCTATCTTCAAAATTTGAAGCACTTAAAATGGTTGAAGATGACACGATATCTAAATTTAACATTCGTTTTTTGGACTTAGCAAATGAATCTTTTGCTCTTGAGGAAAAGCTATCTGATACAAAACTGGTAGAAATCACTGTCTAAAAGTCTTGAGATCACTTCCTTCTCGGTTTAACATGAAAGTCACTGCCATAGAGGAAGCTAATGATATTACTACCATGAAATTTGATGAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATGCACCAAAGAAGAAAATTAGTATTGTGTTCCGAGGGTAAGTGATGATGCTACAAAATCTATCTAGAAAACATCTCAGAATGAAAATCTTGCAGAAACTGTTTCCTTGCTGTAAAGATGATTTTCTAAAATTTAAGACGAGGTTTCAAATCTTAGCAAAATAAAGAGTTTAACACCTTTAGCAACTCCAGTTCAGAATCCTCTATTATTTTAACACATCAAGACTAAGAGATAGTGATCGAGGAAATGATCAATCCATTAAGATTGATAAAAGCATTAGATGTCATGAATGTAAAGGCTTTCGACATTATCAAGCTGAATGTGCAACCTATTTGAAAGGTAAGAAAAAaGGGTTTATAGGTACCCTGTCTGATAAAGAAACATCTTCAGATAATGATTGTGAAAACTATGGAAGAGCCCTTATTA atggatgctgcagaaaaagttactctaaagactaaaattatctggtctaaagaagaagatgaagaatctattggaaactcccgagcactaaatgcattgtacaatggagtggatcaaaatgtttttaagctaatcaatacttgcacatctgctaaggaagcgtgggatattcttgaggtttcttatgaaggaactcccaaagctaaaatatcaaaacttcagattctatcttcaaaatttgaagcacttaaaatggttgaagatgacacgatatctaaatttaacattcgttttttggacttagcaaatgaatcttttgctcttgaggaaaagctatctgatacaaaactggaagctaatgatattactaccatgaaatttgatgagttatttggatctttaagaacttttgaactatcttttgatgataatgcaccaaagaagaaaattagtattgtgttccgaggactaagagatagtgatcgaggaaatgatcaatccattaagattgataaaagcattagatgtcatgaatgtaaaggctttcgacattatcaagctgaatgtgcaacctatttgaaaggtaagaaaaaAGGGTTTATAGGTACCCTGTCTGATAAAGAAACATCTTCAGATAATGATTGTGAAAACTATGGAAGAGCCCTTATTA ATGGATGCTGCAGAAAAAGTTACTCTAAAGACTAAAATTATCTGGTCTAAAGAAGAAGATGAAGAATCTATTGGAAACTCCCGAGCACTAAATGCATTGTACAATGGAGTGGATCAAAATGTTTTTAAGCTAATCAATACTTGCACATCTGCTAAGGAAGCGTGGGATATTCTTGAGGTTTCTTATGAAGGAACTCCCAAAGCTAAAATATCAAAACTTCAGATTCTATCTTCAAAATTTGAAGCACTTAAAATGGTTGAAGATGACACGATATCTAAATTTAACATTCGTTTTTTGGACTTAGCAAATGAATCTTTTGCTCTTGAGGAAAAGCTATCTGATACAAAACTGGAAGCTAATGATATTACTACCATGAAATTTGATGAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATGCACCAAAGAAGAAAATTAGTATTGTGTTCCGAGGACTAAGAGATAGTGATCGAGGAAATGATCAATCCATTAAGATTGATAAAAGCATTAGATGTCATGAATGTAAAGGCTTTCGACATTATCAAGCTGAATGTGCAACCTATTTGAAAGGTAAGAAAAAaGGGTTTATAGGTACCCTGTCTGATAAAGAAACATCTTCAGATAATGATTGTGAAAACTATGGAAGAGCCCTTATTA MDAAEKVTLKTKIIWSKEEDEESIGNSRALNALYNGVDQNVFKLINTCTSAKEAWDILEVSYEGTPKAKISKLQILSSKFEALKMVEDDTISKFNIRFLDLANESFALEEKLSDTKLEANDITTMKFDELFGSLRTFELSFDDNAPKKKISIVFRGLRDSDRGNDQSIKIDKSIRCHECKGFRHYQAECATYLKGKKKGFIGTLSDKETSSDNDCENYGRALIX
BLAST of Cucsa.164770 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1) HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36 Identity = 84/183 (45.90%), Postives = 120/183 (65.57%), Query Frame = 1
BLAST of Cucsa.164770 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.7e-36 Identity = 82/166 (49.40%), Postives = 114/166 (68.67%), Query Frame = 1
BLAST of Cucsa.164770 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2) HSP 1 Score: 159.5 bits (402), Expect = 4.9e-36 Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 1
BLAST of Cucsa.164770 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2) HSP 1 Score: 47.0 bits (110), Expect = 3.5e-02 Identity = 22/56 (39.29%), Postives = 34/56 (60.71%), Query Frame = 1
HSP 2 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 83/183 (45.36%), Postives = 118/183 (64.48%), Query Frame = 1
BLAST of Cucsa.164770 vs. TrEMBL
Match: W9R3W7_9ROSA (Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35 Identity = 92/192 (47.92%), Postives = 121/192 (63.02%), Query Frame = 1
BLAST of Cucsa.164770 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]) HSP 1 Score: 243.0 bits (619), Expect = 4.8e-61 Identity = 139/253 (54.94%), Postives = 169/253 (66.80%), Query Frame = 1
BLAST of Cucsa.164770 vs. NCBI nr
Match: gi|659109377|ref|XP_008454684.1| (PREDICTED: uncharacterized protein LOC103495039 [Cucumis melo]) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44 Identity = 105/244 (43.03%), Postives = 149/244 (61.07%), Query Frame = 1
BLAST of Cucsa.164770 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo]) HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39 Identity = 89/171 (52.05%), Postives = 118/171 (69.01%), Query Frame = 1
BLAST of Cucsa.164770 vs. NCBI nr
Match: gi|659087166|ref|XP_008444307.1| (PREDICTED: uncharacterized protein LOC103487675 [Cucumis melo]) HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36 Identity = 89/187 (47.59%), Postives = 124/187 (66.31%), Query Frame = 1
BLAST of Cucsa.164770 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max]) HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36 Identity = 84/183 (45.90%), Postives = 120/183 (65.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |