Cucsa.164730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.164730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Alpha-galactosidase
Location	scaffold01153 : 96400 .. 96963 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAATATTAAAAGCGGTAAAAACATATCCTTTTGGCATGGCAATTGGCACAATAACAGTCCTCTAGCCTTGTTCAGCCCAATCAATGGTCGTTTGGTTCCATATATCCTTGATGGAGGATGGAGTTGTCTTTCCCAGGACCTCCATTCCAGGAGACCCGTTCAAAGCAGTGAAGTAACTATATGGAATGGGGTTAAATCCACCTTGCCTACTCCCTCTTTTGCTGATGATAATGATTTGCCGATCTGGAAACTGAACACACAAGGGACTTTCAATACGACTTCATTAAAATCTGCCATCCACACAAGCGATAGTAATGGGCCTATtCTTTTTtATCCTGACACCTTTAGAAACTTGTGGAAATCCAGTATAACAAAGAAATGCAAATTCTTCATCTGGTCCCTTATTCATGATTGGATCAACACAGCTGACAATCTTCAAAAGAGACTCCCAAGCATGCAGCTCAGACCAAACTGGTGTGTTATGTGCAGAAAAAATGAAGAAAATAAGGACCATCTCTTTCTTCATTGTTCATATGCCGCTACTATTTGGAAAAAaTTTAA

mRNA sequence

gtggaatattaaaagcggtaaaaacatatccttttggcatggcaattggcacaataacagtcctctagccttgttcagcccaatcaatggtcgtttggttccatatatccttgatggaggatggagttgtctttcccaggacctccattccaggagacccgttcaaagcagtgaagtaactatatggaatggggttaaatccaccttgcctactccctcttttgctgatgataatgatttgccgatctggaaactgaacacacaagggactttcaatacgacttcattaaaatctgccatccacacaagcgatagtaatgggcctattcttttttatcctgacacctttagaaacttgtggaaatccagtataacaaagaaatgcaaattcttcatctggtcccttattcatgattggatcaacacagctgacaatcttcaaaagagactcccaagcatgcagctcagaccaaactggtgtgttatgtgcagaaaaaatgaagaaaataaggaccatctctttcttcattgttcatatgccgctactatttggaaaaaatttaa

Coding sequence (CDS)

GTGGAATATTAAAAGCGGTAAAAACATATCCTTTTGGCATGGCAATTGGCACAATAACAGTCCTCTAGCCTTGTTCAGCCCAATCAATGGTCGTTTGGTTCCATATATCCTTGATGGAGGATGGAGTTGTCTTTCCCAGGACCTCCATTCCAGGAGACCCGTTCAAAGCAGTGAAGTAACTATATGGAATGGGGTTAAATCCACCTTGCCTACTCCCTCTTTTGCTGATGATAATGATTTGCCGATCTGGAAACTGAACACACAAGGGACTTTCAATACGACTTCATTAAAATCTGCCATCCACACAAGCGATAGTAATGGGCCTATtCTTTTTtATCCTGACACCTTTAGAAACTTGTGGAAATCCAGTATAACAAAGAAATGCAAATTCTTCATCTGGTCCCTTATTCATGATTGGATCAACACAGCTGACAATCTTCAAAAGAGACTCCCAAGCATGCAGCTCAGACCAAACTGGTGTGTTATGTGCAGAAAAAATGAAGAAAATAAGGACCATCTCTTTCTTCATTGTTCATATGCCGCTACTATTTGGAAAAAaTTTAA

Protein sequence

WNIKSGKNISFWHGNWHNNSPLALFSPINGRLVPYILDGGWSCLSQDLHSRRPVQSSEVTIWNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFYPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLFLHCSYAATIWKKFX

Homology

[Close]

BLAST of Cucsa.164730 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.2e-20
Identity = 61/192 (31.77%), Postives = 96/192 (50.00%), Query Frame = 1


Query: 3   IKSGKNISFWHGNWHNNSPLAL-------FSPINGRLVPYILDGGWSCLSQDLHSRRPVQ 62
           + +G+ I FW   W  N  L          S +    V  +L   +  LS + + RR + 
Sbjct: 783 VGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVLGNSFP-LSWNFNFRRNLT 842

Query: 63  SSEVTIWNGVKSTLPTPSFA-DDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFYPD 122
            SE+ ++  + S+L +   +   +D   W L++ G+F+  S   A+ + DSN P++F P 
Sbjct: 843 DSEIDLFQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL-SKDSN-PLMFLPA 902

Query: 123 TFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLF 182
            F  LW S +  K K   W + H  +NT D LQ R P   L P WC++C++N E+ DHLF
Sbjct: 903 KF--LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLF 962

Query: 183 LHCSYAATIWKK 187
           LHC     +W +
Sbjct: 963 LHCPVTIGLWHR 969

[Close]

BLAST of Cucsa.164730 vs. TrEMBL
Match: A5BZG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 63/195 (32.31%), Postives = 96/195 (49.23%), Query Frame = 1


Query: 3   IKSGKNISFWHGNWHNNSPLAL-------FSPINGRLVPYILDGGWSCLSQDLHSRRPVQ 62
           + +G+ I FW   W  N  L          S +    V  +L   +  LS + + RR + 
Sbjct: 434 VGNGERIXFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVLGNSFP-LSWNFNFRRNLT 493

Query: 63  SSEVTI----WNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILF 122
            SE+ +     + + S L +PS +D      W L++ G+F+  S   A+ + DSN P++F
Sbjct: 494 DSEIDLLQRLMSSLHSVLLSPSSSDSR---AWSLSSSGSFSVKSFFYAL-SKDSN-PLMF 553

Query: 123 YPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKD 182
            P  F  LW S +  K K   W + H  +NT D LQ R P   L P WC++C++N E+ D
Sbjct: 554 LPAKF--LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESID 613

Query: 183 HLFLHCSYAATIWKK 187
           HLFLHC     +W +
Sbjct: 614 HLFLHCPVTIGLWHR 620

[Close]

BLAST of Cucsa.164730 vs. TrEMBL
Match: A5B978_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 61/192 (31.77%), Postives = 95/192 (49.48%), Query Frame = 1


Query: 3    IKSGKNISFWHGNWHNNSPLAL-------FSPINGRLVPYILDGGWSCLSQDLHSRRPVQ 62
            + +G+ I FW   W  N  L          S +    V  +L   +  LS + + RR + 
Sbjct: 1632 VGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVLGNSFP-LSWNFNFRRNLT 1691

Query: 63   SSEVTIWNGVKSTLPTPSFADDN-DLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFYPD 122
             SE+ +   + S+L +   +  + D   W L++ G+F+  S   A+ + DSN P++F P 
Sbjct: 1692 DSEIDLLQRLMSSLHSVLLSPSSXDSRAWSLSSSGSFSVKSFFYAL-SKDSN-PLMFLPA 1751

Query: 123  TFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLF 182
             F  LW S +  K K   W + H  +NT D LQ R P   L P WC++C++N E+ DHLF
Sbjct: 1752 KF--LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLF 1811

Query: 183  LHCSYAATIWKK 187
            LHC     +W +
Sbjct: 1812 LHCPVTIGLWHR 1818

[Close]

BLAST of Cucsa.164730 vs. TrEMBL
Match: A5BP42_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_035350 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 66/195 (33.85%), Postives = 95/195 (48.72%), Query Frame = 1


Query: 3   IKSGKNISFWHGNWHNNSPLA-----LFSPINGR--LVPYILDGGWSCLSQDLHSRRPVQ 62
           + +G+ I FW   W  N  L      L+  I+ +   V  +L   +  L+ +L+ RR + 
Sbjct: 29  VGNGERIRFWEDLWWGNQSLCSQFADLYRVISVKNLTVSNVLGNSFP-LAWNLNFRRNLT 88

Query: 63  SSEVTIWNGVKSTLPT----PSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILF 122
            SE+ +   + S+L +    PS AD      W L++ G F   S   A+  S  + PILF
Sbjct: 89  DSEIDLLQRLMSSLSSVRFSPSLADSR---AWSLSSSGLFTVKSFFLAL--SKVSNPILF 148

Query: 123 YPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKD 182
            P  F  LW S +  K K   W + H  +NT D LQ R P   L P WC++C+ N E+ D
Sbjct: 149 LPAKF--LWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKANGESID 208

Query: 183 HLFLHCSYAATIWKK 187
           HLFLHC     +W K
Sbjct: 209 HLFLHCPVTIGLWNK 215

[Close]

BLAST of Cucsa.164730 vs. TrEMBL
Match: A5C9Z3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.8e-19
Identity = 65/195 (33.33%), Postives = 95/195 (48.72%), Query Frame = 1


Query: 3    IKSGKNISFWHGNWHNNSPLA-----LFSPINGR--LVPYILDGGWSCLSQDLHSRRPVQ 62
            + +G+ I FW   W  N  L      L+  I+ +   V  +L   +  L+ +L+ RR + 
Sbjct: 1648 VGNGERIRFWEDLWWGNQSLCSQFANLYRVISVKNLTVSNVLGNSFP-LAWNLNFRRNLT 1707

Query: 63   SSEVTIWNGVKSTLPT----PSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILF 122
             SE+ +   + S+L +    PS AD     +W L++ G  +  S   A+  S  + PILF
Sbjct: 1708 DSEIDLLQRLMSSLSSVCFSPSLADSR---VWSLSSSGLLSVKSFFLAL--SKVSNPILF 1767

Query: 123  YPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKD 182
             P  F  LW S    K K   W + H  +NT D LQ R P   L P WC++C+ N E+ D
Sbjct: 1768 LPAKF--LWSSKAPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLYPQWCILCKGNGESID 1827

Query: 183  HLFLHCSYAATIWKK 187
            HLFLHC     +W K
Sbjct: 1828 HLFLHCPVTIGLWNK 1834

[Close]

BLAST of Cucsa.164730 vs. TAIR10
Match: AT3G25270.1 (AT3G25270.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.4e-06
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 1


Query: 119 LWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLFLHCS 178
           +WK     K K F+W L+   + T DNL++R   ++  P  C  C + +E   HLF  C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRR--HIRNHPQ-CHRCCQEDETSQHLFFDCF 77

Query: 179 YAATIWK 186
           YA  +W+
Sbjct: 78  YAQQVWR 81

[Close]

BLAST of Cucsa.164730 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 7.9e-41
Identity = 83/191 (43.46%), Postives = 118/191 (61.78%), Query Frame = 1


Query: 1   WNIKSGKNISFWHGNWHNNSPLALFSPINGRLVPY---ILDGGWSCLSQD--LHSRRPVQ 60
           W +  G +ISFW  NW+ N+PL+L  P    L       +   W+  S D  LH  RP++
Sbjct: 122 WKVNDGDDISFWLDNWNGNAPLSLAVPRLFALSTNKKGTVKEFWNPSSNDWHLHINRPLR 181

Query: 61  SSEVTIWNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFYPDT 120
             E  +W+ +K++LPTP     +  P+WKLN+   F+T S+K A+  +  + P  F+P+ 
Sbjct: 182 DHEENLWHNIKASLPTPLPNRGHPKPLWKLNSNNIFDTASVKRALAEAPIS-PANFHPNL 241

Query: 121 FRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLFL 180
           ++ LWK    KKCKFFIW+LIH  INTAD LQKRLP+  L PNWC MC K++E+ +HLF+
Sbjct: 242 YKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFI 301

Query: 181 HCSYAATIWKK 187
           HC Y+  +W K
Sbjct: 302 HCPYSQQLWSK 311

[Close]

BLAST of Cucsa.164730 vs. NCBI nr
Match: gi|659071582|ref|XP_008460744.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 1


Query: 40  GWSCLSQ-DLHSRRPVQSSEVTIWNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKS 99
           GW+  +  D+H  RP++  E+  WN +K+ L  P          WKLN+ G F+  S+K 
Sbjct: 76  GWNVNNDWDIHIHRPLRDYELQTWNDIKAPLAVPHPNKGAPKSFWKLNSNGGFSIASVKK 135

Query: 100 AIHTSDSNGPILFYPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPN 159
           A+++ + +  I     TF +LWKS I K+CKFFIW+LIH+ INTA+ LQKRLP+  L P 
Sbjct: 136 ALNSIEIDDNIAIQASTFNSLWKSEIPKRCKFFIWTLIHECINTAEKLQKRLPNYNLCPQ 195

Query: 160 WCVMCRKNEENKDHLFLHCSYAATIWKK 187
           WC MC+ N E+ +HLF+ C YA TIW K
Sbjct: 196 WCSMCKSNAEDINHLFIQCPYAQTIWNK 223

[Close]

BLAST of Cucsa.164730 vs. NCBI nr
Match: gi|659086627|ref|XP_008444035.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 6.3e-22
Identity = 61/192 (31.77%), Postives = 92/192 (47.92%), Query Frame = 1


Query: 1   WNIKSGKNISFWHGNWHNNSPLALFSPINGRLVPYILD------GGWSCLSQ--DLHSRR 60
           W + +G  ISFW+ NW     L+   P   RL    LD        W+      ++  RR
Sbjct: 189 WKLNNGDQISFWYSNWSLEGRLSTAYP---RLFALTLDKEISVKDAWNTFDNKWNIIFRR 248

Query: 61  PVQSSEVTIWNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFY 120
            +   E + W  +   LP+P     +  P W  ++  +F+T S K  I       P    
Sbjct: 249 ELNDRERSKWAKILEILPSPRSNRGSSKPTWTPDSNNSFSTASAKVLISRQLDQSPGDPR 308

Query: 121 PDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDH 180
                 +WKS+I  K KFF+W LI   INT + +Q+R+P++ L+PNWCV+C+K+ E+  H
Sbjct: 309 AKLLEIIWKSTIPMKIKFFMWCLIQRRINTMEVIQQRMPNIPLQPNWCVLCKKDNESGTH 368

Query: 181 LFLHCSYAATIW 185
           L L C     +W
Sbjct: 369 LLLRCEAVKPLW 377

[Close]

BLAST of Cucsa.164730 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-19
Identity = 58/197 (29.44%), Postives = 97/197 (49.24%), Query Frame = 1


Query: 1   WNIKSGKNISFWHGNWHNNSPLA-------LFSPINGRLVPYILDGGWSCLSQDLHSRRP 60
           + + +G+ + FW   W    PL        L S  +G  +   ++G  + LS +   RR 
Sbjct: 271 FKVGNGERVRFWEDGWLAGGPLKEQFPKLFLLSRKHGHNISRFVEGSSNSLSWNFDFRRN 330

Query: 61  VQSSEV----TIWNGVKSTLPTPSFADDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPI 120
           +   E+    T+   V+    +PS  D+     W L   G F   S +S +    +NG +
Sbjct: 331 LNEMEIEEAATLLQKVEEVRLSPSKMDNRR---WNLEASGLFTCKSYRSLL---SNNGIV 390

Query: 121 LFYPDTFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEEN 180
            +YP  +  +WKS   +K K  +W + +  +NT D +Q+R P M L P+WC +C+  E +
Sbjct: 391 HYYPP-YSQIWKSKAPQKVKILVWLVANGNLNTCDRIQRRNPRMCLSPHWCSLCKAMEVS 450

Query: 181 KDHLFLHCSYAATIWKK 187
            +H+FLHCSY+  +W K
Sbjct: 451 VNHIFLHCSYSIQLWWK 460

[Close]

BLAST of Cucsa.164730 vs. NCBI nr
Match: gi|147841235|emb|CAN75609.1| (hypothetical protein VITISV_002943 [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-19
Identity = 61/192 (31.77%), Postives = 96/192 (50.00%), Query Frame = 1


Query: 3   IKSGKNISFWHGNWHNNSPLAL-------FSPINGRLVPYILDGGWSCLSQDLHSRRPVQ 62
           + +G+ I FW   W  N  L          S +    V  +L   +  LS + + RR + 
Sbjct: 783 VGNGERIRFWEDLWWGNQTLCAQFAELYRVSSVRNLTVSNVLGNSFP-LSWNFNFRRNLT 842

Query: 63  SSEVTIWNGVKSTLPTPSFA-DDNDLPIWKLNTQGTFNTTSLKSAIHTSDSNGPILFYPD 122
            SE+ ++  + S+L +   +   +D   W L++ G+F+  S   A+ + DSN P++F P 
Sbjct: 843 DSEIDLFQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL-SKDSN-PLMFLPA 902

Query: 123 TFRNLWKSSITKKCKFFIWSLIHDWINTADNLQKRLPSMQLRPNWCVMCRKNEENKDHLF 182
            F  LW S +  K K   W + H  +NT D LQ R P   L P WC++C++N E+ DHLF
Sbjct: 903 KF--LWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLF 962

Query: 183 LHCSYAATIWKK 187
           LHC     +W +
Sbjct: 963 LHCPVTIGLWHR 969

The following BLAST results are available for this feature:

BLAST of Cucsa.164730 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AFR7_VITVI	9.2e-20	31.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1	[more]
A5BZG3_VITVI	1.6e-19	32.31	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1	[more]
A5B978_VITVI	2.7e-19	31.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1	[more]
A5BP42_VITVI	2.7e-19	33.85	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_035350 P...	[more]
A5C9Z3_VITVI	7.8e-19	33.33	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1	[more]

BLAST of Cucsa.164730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25270.1	1.4e-06	34.33	Ribonuclease H-like superfamily protein	[more]

BLAST of Cucsa.164730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659122972\|ref\|XP_008461420.1\|	7.9e-41	43.46	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659071582\|ref\|XP_008460744.1\|	1.4e-32	45.27	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659086627\|ref\|XP_008444035.1\|	6.3e-22	31.77	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|657996200\|ref\|XP_008390463.1\|	1.0e-19	29.44	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|147841235\|emb\|CAN75609.1\|	1.3e-19	31.77	hypothetical protein VITISV_002943 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.164730.1	Cucsa.164730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 115..184 score: 7.6
None	No IPR available	PANTHER	PTHR25952	FAMILY NOT NAMED	coord: 71..184 score: 7.2
None	No IPR available	PANTHER	PTHR25952:SF208	SUBFAMILY NOT NAMED	coord: 71..184 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.164730	Cla004023	Watermelon (97103) v1	cgywmB307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.164730	Silver-seed gourd	carcgyB0108
Cucsa.164730	Silver-seed gourd	carcgyB0746
Cucsa.164730	Cucumber (Chinese Long) v3	cgycucB264
Cucsa.164730	Watermelon (97103) v2	cgywmbB295
Cucsa.164730	Wax gourd	cgywgoB339
Cucsa.164730	Wax gourd	cgywgoB341
Cucsa.164730	Cucumber (Gy14) v1	cgycgyB015
Cucsa.164730	Cucumber (Gy14) v1	cgycgyB084
Cucsa.164730	Cucumber (Gy14) v1	cgycgyB105
Cucsa.164730	Cucurbita maxima (Rimu)	cgycmaB0467
Cucsa.164730	Cucurbita maxima (Rimu)	cgycmaB0471
Cucsa.164730	Cucurbita maxima (Rimu)	cgycmaB0472
Cucsa.164730	Cucurbita moschata (Rifu)	cgycmoB0468
Cucsa.164730	Cucurbita moschata (Rifu)	cgycmoB0473
Cucsa.164730	Cucurbita moschata (Rifu)	cgycmoB0474
Cucsa.164730	Cucurbita moschata (Rifu)	cgycmoB0475
Cucsa.164730	Wild cucumber (PI 183967)	cgycpiB255
Cucsa.164730	Wild cucumber (PI 183967)	cgycpiB258
Cucsa.164730	Wild cucumber (PI 183967)	cgycpiB261
Cucsa.164730	Cucumber (Chinese Long) v2	cgycuB248
Cucsa.164730	Cucumber (Chinese Long) v2	cgycuB251
Cucsa.164730	Cucumber (Chinese Long) v2	cgycuB254
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB290
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB291
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB292
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB293
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB294
Cucsa.164730	Melon (DHL92) v3.5.1	cgymeB295
Cucsa.164730	Watermelon (Charleston Gray)	cgywcgB288
Cucsa.164730	Watermelon (Charleston Gray)	cgywcgB293
Cucsa.164730	Watermelon (Charleston Gray)	cgywcgB294
Cucsa.164730	Watermelon (97103) v1	cgywmB303
Cucsa.164730	Watermelon (97103) v1	cgywmB306
Cucsa.164730	Watermelon (97103) v1	cgywmB309
Cucsa.164730	Watermelon (97103) v1	cgywmB312
Cucsa.164730	Cucurbita pepo (Zucchini)	cgycpeB0457
Cucsa.164730	Cucurbita pepo (Zucchini)	cgycpeB0458
Cucsa.164730	Bottle gourd (USVL1VR-Ls)	cgylsiB276
Cucsa.164730	Melon (DHL92) v3.6.1	cgymedB285