Cucsa.164330 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.164330
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionABC transporter family protein
Locationscaffold01148 : 177293 .. 177524 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGTATGTGATTTTTTCCTCTGA

mRNA sequence

GTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGTATGTGATTTTTTCCTCTGA

Coding sequence (CDS)

GTATGGAGCGATTGTAATGGATGATCAGAATAGTGATGGCAGTATAGGATATACAGTACTGCACAATTGTTCTTGTCAGCATTCTGCCCCAACCTTTATCAATATAGTGGACGCTGCAATTCTAAGGCTTGCTACTGGTGACCAGAATATGACTATTCAAACACGAAATCACCCTCTCCCCATGACAAAAAGCCAGCGCTTGCAACGACATGTATGTGATTTTTTCCTCTGA

Protein sequence

YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLPMTKSQRLQRHVCDFFL*
Homology
[Close]
BLAST of Cucsa.164330 vs. Swiss-Prot
Match: AB1A_ARATH (ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YG+I+MD Q+ DGS+GYTVLHN +CQH+ P +IN++ AAILRLATG++NMTIQTRNHPLP
Sbjct: 1102 YGSILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLP 1161

Query: 61   MTKSQRLQRHVCDFF 76
             TK+QR+QRH  D F
Sbjct: 1162 PTKTQRIQRHDLDAF 1176

[Close]
BLAST of Cucsa.164330 vs. TrEMBL
Match: A0A0A0KZR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
          YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 9  YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 68

Query: 61 MTKSQRLQRHVCDFF 76
          MTKSQRLQRH  D F
Sbjct: 69 MTKSQRLQRHDLDAF 83

[Close]
BLAST of Cucsa.164330 vs. TrEMBL
Match: A0A059DHV3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A023392 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-28
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YGAIVMDDQN DGS+GYTVLHNCSCQH+APTFIN++++AILRLAT D+NMTI+TRNHPLP
Sbjct: 971  YGAIVMDDQNDDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATQDKNMTIRTRNHPLP 1030

Query: 61   MTKSQRLQRHVCDFF 76
            MTKSQRLQ H  D F
Sbjct: 1031 MTKSQRLQHHDLDAF 1045

[Close]
BLAST of Cucsa.164330 vs. TrEMBL
Match: A0A067K2P2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21102 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-28
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1   YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
           YGAI+MDDQN DGS+GYTVLHN SCQH+APT+INI++AAILRLATGD+NMTI+TRNHPLP
Sbjct: 759 YGAIIMDDQNDDGSLGYTVLHNSSCQHAAPTYINIMNAAILRLATGDKNMTIRTRNHPLP 818

Query: 61  MTKSQRLQRHVCDFF 76
           MTKSQ LQRH  D F
Sbjct: 819 MTKSQHLQRHDLDAF 833

[Close]
BLAST of Cucsa.164330 vs. TrEMBL
Match: I1JNC2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YGAIVMDDQN+DGS+GYTVLHNCSCQH+APTFIN++++AILRLAT D NMTIQTRNHPLP
Sbjct: 1115 YGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATHDTNMTIQTRNHPLP 1174

Query: 61   MTKSQRLQRHVCDFF 76
             T+SQRLQRH  D F
Sbjct: 1175 TTQSQRLQRHDLDAF 1189

[Close]
BLAST of Cucsa.164330 vs. TrEMBL
Match: A0A0R0KIK5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G136000 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-28
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YGAIVMDDQN+DGS+GYTVLHNCSCQH+APTFIN++++AILRLAT D NMTIQTRNHPLP
Sbjct: 1049 YGAIVMDDQNNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATHDTNMTIQTRNHPLP 1108

Query: 61   MTKSQRLQRHVCDFF 76
             T+SQRLQRH  D F
Sbjct: 1109 TTQSQRLQRHDLDAF 1123

[Close]
BLAST of Cucsa.164330 vs. TAIR10
Match: AT2G41700.1 (AT2G41700.1 ATP-binding cassette A1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-26
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YG+I+MD Q+ DGS+GYTVLHN +CQH+ P +IN++ AAILRLATG++NMTIQTRNHPLP
Sbjct: 1102 YGSILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLP 1161

Query: 61   MTKSQRLQRHVCDFF 76
             TK+QR+QRH  D F
Sbjct: 1162 PTKTQRIQRHDLDAF 1176

[Close]
BLAST of Cucsa.164330 vs. NCBI nr
Match: gi|778692274|ref|XP_011653432.1| (PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 1109 YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 1168

Query: 61   MTKSQRLQRHVCDFF 76
            MTKSQRLQRH  D F
Sbjct: 1169 MTKSQRLQRHDLDAF 1183

[Close]
BLAST of Cucsa.164330 vs. NCBI nr
Match: gi|700198704|gb|KGN53862.1| (hypothetical protein Csa_4G171520 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1  YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
          YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 9  YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 68

Query: 61 MTKSQRLQRHVCDFF 76
          MTKSQRLQRH  D F
Sbjct: 69 MTKSQRLQRHDLDAF 83

[Close]
BLAST of Cucsa.164330 vs. NCBI nr
Match: gi|778692276|ref|XP_011653433.1| (PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1    YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
            YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 1109 YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 1168

Query: 61   MTKSQRLQRHVCDFF 76
            MTKSQRLQRH  D F
Sbjct: 1169 MTKSQRLQRHDLDAF 1183

[Close]
BLAST of Cucsa.164330 vs. NCBI nr
Match: gi|778692278|ref|XP_011653434.1| (PREDICTED: ABC transporter A family member 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
           YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 925 YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 984

Query: 61  MTKSQRLQRHVCDFF 76
           MTKSQRLQRH  D F
Sbjct: 985 MTKSQRLQRHDLDAF 999

[Close]
BLAST of Cucsa.164330 vs. NCBI nr
Match: gi|778692282|ref|XP_011653435.1| (PREDICTED: ABC transporter A family member 1 isoform X4 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-33
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 1 

Query: 1   YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 60
           YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP
Sbjct: 921 YGAIVMDDQNSDGSIGYTVLHNCSCQHSAPTFINIVDAAILRLATGDQNMTIQTRNHPLP 980

Query: 61  MTKSQRLQRHVCDFF 76
           MTKSQRLQRH  D F
Sbjct: 981 MTKSQRLQRHDLDAF 995

The following BLAST results are available for this feature:
BLAST of Cucsa.164330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AB1A_ARATH1.9e-2569.33ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2[more]
BLAST of Cucsa.164330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZR5_CUCSA1.3e-3396.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G171520 PE=4 SV=1[more]
A0A059DHV3_EUCGR1.3e-2881.33Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A023392 PE=4... [more]
A0A067K2P2_JATCU1.7e-2881.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21102 PE=4 SV=1[more]
I1JNC2_SOYBN2.2e-2881.33Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0R0KIK5_SOYBN2.2e-2881.33Uncharacterized protein OS=Glycine max GN=GLYMA_03G136000 PE=4 SV=1[more]
BLAST of Cucsa.164330 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G41700.11.1e-2669.33 ATP-binding cassette A1[more]
BLAST of Cucsa.164330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778692274|ref|XP_011653432.1|1.9e-3396.00PREDICTED: ABC transporter A family member 1 isoform X1 [Cucumis sativus][more]
gi|700198704|gb|KGN53862.1|1.9e-3396.00hypothetical protein Csa_4G171520 [Cucumis sativus][more]
gi|778692276|ref|XP_011653433.1|1.9e-3396.00PREDICTED: ABC transporter A family member 1 isoform X2 [Cucumis sativus][more]
gi|778692278|ref|XP_011653434.1|1.9e-3396.00PREDICTED: ABC transporter A family member 1 isoform X3 [Cucumis sativus][more]
gi|778692282|ref|XP_011653435.1|1.9e-3396.00PREDICTED: ABC transporter A family member 1 isoform X4 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026082ABCA
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005215 transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.164330.1Cucsa.164330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026082ABC transporter A, ABCAPANTHERPTHR19229ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCAcoord: 1..70
score: 3.8
NoneNo IPR availablePANTHERPTHR19229:SF36PROTEIN ABT-4coord: 1..70
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.164330Cla002515Watermelon (97103) v1cgywmB301
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.164330Cucumber (Chinese Long) v3cgycucB260
Cucsa.164330Wild cucumber (PI 183967)cgycpiB253
Cucsa.164330Cucumber (Chinese Long) v2cgycuB246
Cucsa.164330Melon (DHL92) v3.5.1cgymeB287
Cucsa.164330Watermelon (Charleston Gray)cgywcgB286
Cucsa.164330Cucurbita pepo (Zucchini)cgycpeB0451
Cucsa.164330Cucurbita pepo (Zucchini)cgycpeB0452
Cucsa.164330Melon (DHL92) v3.6.1cgymedB282
Cucsa.164330Silver-seed gourdcarcgyB0233
Cucsa.164330Silver-seed gourdcarcgyB0332