Cucsa.159590 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.159590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTranscription initiation factor IIF subunit beta, putative
Locationscaffold01144 : 792 .. 5416 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTCGCACCACAAATCAGTGTGTTTCGTCAGAAGGAAGTCAATACTCGATTGAGAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATACAGATTACATCACTTGTACGATAATCTTCTGCTTCTGATTGCGTAATATCAAACCTCCCTTTGATTTCCGACCACCGCCTTCCACTTCTTTAGGGTCCACCGTCGTCTCCAGAAAAGAAAAAAAaTAGGAACAAAGTTGCAGTAAATCCGCCGTTGAAAATTCAGAAGAGAGAGAGAGGGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGGTAACCTATAATTCGACATCTGTAATTGATGTTTATGTAGCGAAGTAACTAGACTTGTTTTCTTAGTAGGTTTACTTGTTTTCTTGGGCTTTAAATCTTGTGAATTTTGTTGTTTCGAATTGTGACTTTGATCGATGCTTGAATGAATGTGGAAGCAGAACCCTAGATTTTGATTCGTTGTGATTTTGATTCCTTGGGAGGGGCAGCTTGATTTTATAATATGTATTGCCAAAGTTCTTTGACAAATTTTGTTGTGGTAATGTCTTATATCTGTTGTTTGGCCTATTGAATGAGAAGCATAGGGCAGTGAGACtCAGGTTCTCGAAATGCCCCCAAACCATGTTAATCTCTTTATTAGTCTCTATTCTTTACTTGTCGATTTTGTTTTTGTCATAACATTCGTTCTAGATAAGGGGAATGATATTAGTTCGTTTATGTAAGTTCTGAGCTTTGGCCTCAAATTGTGCAAGACGATTGAAGTCCTATTTTGGATCATTTGTTATGAAACTGAAATATAGTTATGAATGTTGTAAAAGATATGACCTTCCTGGATAATGTCTCCATTGGACTTTATAAGTCTTTGTTAGACCATACATACTCATATGTGCACATACATGCAGACATGTATATACACATATATAAATATAGGAAGCAAATAATTTATTTATACATATCCAGCAATAATGAGTGTTTCGTGTGGCTCATTGTTTATCCTTTTTTTTTtGTCTAACTACTGTATTCCCTTGCATGCTTTAAAATGAACCTCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGTGAGCTACATGATCCTTATCTGTTGTCAATTCTTTCTTTGACTATGCTGTCACCCTGAATGTAATATGTGAATATTTCTGCCATCTGGAAATGCTTCTTCCTCTATTCTGGATATTGTTTCCTCTGTTATGAACACCAATTTGCACAGATTTATTTTTATTTTAGTGTAATTACATTTGTGTATTTTTTTtACATAAGGAACGAGGATGTTCATTGAAATGAAAAGGGACAGAACTTAGGTGAGGTTTCCCTTTCACCCTTTGCTAAGGAGGTTATAAAAAATCTCCCAATTTTGAACTTATCAAGAATCGGCTGTGGTTACTTATGAAGGATAGACACTTCATGTTGTGCAGAGAATCGGTATCAGAAACGTTCTAATACTAATATGTCCAAATATATATGAGATATGTGGGAGATGTGTGATTCCGTGATTCCCAAGCCATATGCCTCAAGTTGAGTATGGGAGAGTGATCAATTTCCACTTATCCAAATGGGACTGCCTTGAGTGAAATTATCTTTTCCTAAGTGAAATCTCTCTCACTTTTTGGAAACGTTGCCTGGGTTTTTAAATAGAGAGAAATAATAGGTTGGGTTGATGGAGACAATCACTAAACTGAAATATTTAATCTACAGTCCAAACGTTGCCTCACATACGAGAATATTAGTTTGGGTTGATGGACATGACCACCCCCTTAAGCAAAAAATTTAATCTACTGTCCTTTGAGGTTGGGTTATTATTCAAATTTGCAATTTTATTAGTACCTCGTCCAAGAAGGCTCCTGGGAGAGTGCAAGATTTTATATTTTTATCTGTAGGAGGCTAAGGAAATATTAGGGCAATAAATAATACTCACAATCATAGAAGGCAAAAGTAATATTGTTGTCAGTATAATGAATTTGTGAAATATGGATCTGTTGATCATCTTCCCCAAAGCGTTCAACAGGATCTTAAAACATTGGCATGGCTGCAGAGTTAACAACTAAAGTGGACACTAGATAGGAAGCGGGAGAGGGTTCCTGGTGACAAATTCCTCTTGAAGTGTGGATCTTGCTTTCTAGGGCCCTTGTGGACTAGTAGTTGACCGAAGATAGCTATCACCTGATCTAACTTCTCCCTTTGTTACCAAATCCTTTTTTGTTTATGATAGCATTCAATCAGTTCCTTTCACTCTTTTTTTATTAACCTTGATCAAGTTTTAGAACAAAACCTATTTTTTCCATTCACCTCTTATTTATAGTAACATGGATTTTCATCAGAGAGAATCTTCCAATAAAGGCTATTTGGAACGCGTGAAGTGAATCAATCTATGTTTTTTTAGCTTTTTGTTGCAAGTTTTATGTTTCTTTTGATGCAGTTTATATTCTTTGTGGCATGTTCCGATTATGGAAAGCTTTTTGTAATCTCCAGAACAACTTTTCTCAACCTCTTAGTTGGACCCCCTTCCTGTGGAGGGCCCTTTTTTTtAATCCACTATTTCCATAAATGACTTCCACCTGGAGAAGTCTTGAGTTCTTGTCTCCCCTTTTCAGCTTGTCAGCCCATAAATTTATAAACCACAAAAAATTATAATTGTTGTTCTGCATATTTCTTGCCGTTCTAATAACCCAACAAGAAAATTTGTTTGTGGAATTAAGTATTGTTTTTGTTTAACTTCTTCCTTCTTTTGAGTTCAGTAATGCTAGGGTGGACATTTGAACATCTGTTGAGGATAAAGCCTCTACCAATTGAGTTATGCTTGGATTTGTCCTGCAATTTTAGTTTCTTGACTTGATCTACATTTGAAACTATGAACTAATTTAACAAACATCATTAGCTCCTGTTTTCAACTTTATTTTTTTtAATTAGGTGGGGAGGGTTTCCTCTCTTGAGAACTATTTCCGTCAAGTATGGATGAAGATGCATGTATCATAATCAGCTAATGTAGTCGGTGTTTGTTATAGATTTTGTCTCTTTGTAAATTCTTTTGTAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTACATCATCAAGAGCCCTTTTACTTTTATCTAATACTTTACTTTCCTTAAGTCCCACTACTCCATGTTTGCAATTGATTTTACATTTCACAATTTTCTCATGTATTGATAAGGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTGTATGTCTACTGATCGCTTCCTCATTTATCAACGATTTTTGAAAATATTACTCTTCTTTTCTGTTTCTCTGAAACTGTTGCTAGAGAAGATATTGAATGAGAAGATATAATTTATAGAACCCTCCCGACATACACAACACTAGACACTATACAGCCTTCCCTTCTCTATAACTCTAAAGTTCATCAGAGACCCATACACCCTAGAGATCATAAATTGTTTTGGCTGTCTGTTGCCCGTGTACATAATAATTATTTTTGGTTTGATTTATGTTCCTTATCTTTGCAGCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTGGGGTAAGGAAATGGTCAGAAATAAATCTGCTAATTTAAGAGGGGAAAAAaTATTTTGCTTTTCCTTTAGTTATATTTTCTTGGGAGGGGAGAGATGGGAGGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGGTAGCTTTATACTGAAGTAAAACCAAATATGAAATGAAAGTTGCGGGGAGGGAGGGAGTTTTTCTTATGGCAATTACGTGCAAGATCGTCGGAAGTTACAAGATGAATTTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTT

mRNA sequence

GGTCGCACCACAAATCAGTGTGTTTCGTCAGAAGGAAGTCAATACTCGATTGAGAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATACAGATTACATCACTTGTACGATAATCTTCTGCTTCTGATTGCGTAATATCAAACCTCCCTTTGATTTCCGACCACCGCCTTCCACTTCTTTAGGGTCCACCGTCGTCTCCAGAAAAGAAAAAAAATAGGAACAAAGTTGCAGTAAATCCGCCGTTGAAAATTCAGAAGAGAGAGAGAGGGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAGGTTAGTTTTTGACTGTATCATTATATAGATTCCCTTTTCTTGGGGTAAGGAAATGGTCAGAAATAAATCTGCTAATTTAAGAGGGGAAAAAATATTTTGCTTTTCCTTTAGTTATATTTTCTTGGGAGGGGAGAGATGGGAGGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGGTAGCTTTATACTGAAGTAAAACCAAATATGAAATGAAAGTTGCGGGGAGGGAGGGAGTTTTTCTTATGGCAATTACGTGCAAGATCGTCGGAAGTTACAAGATGAATTTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTT

Coding sequence (CDS)

ATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCGTTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGTATATCTTTTCTCACCGTTTTCTTTCATCATTCTTGAACTCTTGTGGCAGTATGATTCTATAATCAATCATTTATTGCAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAG

Protein sequence

MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE*
Homology
[Close]
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfg2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-20
Identity = 80/286 (27.97%), Postives = 127/286 (44.41%), Query Frame = 1 

Query: 2   EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDE 61
           E++      + +LD G+    VWL+K P  +   W + P  D+  L  V +  D +Q   
Sbjct: 11  EEDDRYEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPEDDAANLGCVRVKNDEIQLLL 70

Query: 62  SSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSME-----GKVEHKFD 121
            +S          E  +VPK ++L +   FV        S+   SM+     G V H+ +
Sbjct: 71  QNS---------PENADVPKIYNLRVMNKFVRNSYVFRESETSSSMKSTALVGTVAHECN 130

Query: 122 MKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFS 181
           + P     + Y ++ ++R   +    R++Q+ID+  G  + P     G + S S+    S
Sbjct: 131 VSPVIN--DDYRRVMQKRALAASAPKRKVQMIDDRGGSLLAP-----GTLGSRSR----S 190

Query: 182 PFSFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWA 241
             SFI                   + V P     +K +R  R EL DI+FK FE    W 
Sbjct: 191 TTSFI-------------------RNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWT 250

Query: 242 LKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE 283
           LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++
Sbjct: 251 LKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMD 257

[Close]
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16
Identity = 69/274 (25.18%), Postives = 119/274 (43.43%), Query Frame = 1 

Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + +        
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAE-------- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILE 192
                 CR   +++ +K +++Q+ ++ + V +      V                     
Sbjct: 128 ------CRPAASENYMKLKRLQIEESSKPVRLSQQADKV--------------------- 187

Query: 193 LLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQET 252
           +   Y  + NH  Q   +    K+ D KR R D+  + D++F  FE+   + LK LV  T
Sbjct: 188 VTTNYKPVANH--QYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDIT 240

Query: 253 DQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
            QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct: 248 KQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240

[Close]
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16
Identity = 69/274 (25.18%), Postives = 119/274 (43.43%), Query Frame = 1 

Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKAPGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + +        
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAE-------- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILE 192
                 CR   N++ ++ +++Q+ ++ + V +      V                     
Sbjct: 128 ------CRPAANENYMRLKRLQIEESSKPVRLSQQLDKV--------------------- 187

Query: 193 LLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQET 252
           +   Y  + NH  Q   +    K+ D KR R D+  + D++F  FE+   + LK LV  T
Sbjct: 188 VTTNYKPVANH--QYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDIT 240

Query: 253 DQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
            QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Sbjct: 248 KQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240

[Close]
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_DICDI (General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2 PE=3 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 7.9e-16
Identity = 69/265 (26.04%), Postives = 114/265 (43.02%), Query Frame = 1 

Query: 14  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAG 73
           ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G
Sbjct: 13  VNTDNADNQVWLIKVPKFLSESWQK--------IGQGEIGQIHIKGGDNISLSY-----G 72

Query: 74  TETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRE 133
            + G   +  +     D  P+ +FSE   G +++EG +  + D+K   E+ + Y  L + 
Sbjct: 73  PDVGQEFQLITTANTLDNQPLKIFSEDKDGALALEGNIGLRCDIKIDVESPQ-YRDLMKS 132

Query: 134 RTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILELLWQYDSII 193
           R  K   K R  QVID                        LF+P  F             
Sbjct: 133 RHTKYNTKTRMTQVIDES---------------------ELFTPTLFDA----------- 192

Query: 194 NHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKE 253
           N +      +   K+S  K+ +    E+ D++F  F  + +  LK L   T+QP   LK 
Sbjct: 193 NKVKVSTVGITQKKKSTDKKEKLPEDEVLDLIFSAFRAEKHLDLKTLESFTEQPKNHLKT 231

Query: 254 ILNELCVYNKRGTNQGTYELKPEYK 279
           IL ++C+ NKRG     YELKPE++
Sbjct: 253 ILEKVCILNKRGPYHHLYELKPEFR 231

[Close]
BLAST of Cucsa.159590 vs. Swiss-Prot
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-15
Identity = 68/274 (24.82%), Postives = 118/274 (43.07%), Query Frame = 1 

Query: 13  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMA 72
           +L   K +  VWL+K P  +++ W        +   ++  +    Q     S     ++A
Sbjct: 8   DLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKN----QGRTEVSFTLNEDLA 67

Query: 73  GT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGKVSMEGKVEHKFDMKPHSENL 132
              + G  P S S      FV        + VF+E+S  K+S+EG V  + +        
Sbjct: 68  NIHDIGGKPASVSAPREHPFVLQSVGGQTLTVFTESSSDKLSLEGIVVQRAE-------- 127

Query: 133 EMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILE 192
                 CR   +++ +K +++Q+ ++ + V +      V                     
Sbjct: 128 ------CRPAASENYMKLKRLQIEESSKPVRLSQQLDKV--------------------- 187

Query: 193 LLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQET 252
           +   Y  + NH  Q   +    K+ D KR R D+  + D++F  FE+   + LK LV  T
Sbjct: 188 VTTNYKPVANH--QYNIEYERKKKEDGKRARADKQHVLDMLFSAFEKHQYYNLKDLVDIT 240

Query: 253 DQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK 279
            QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct: 248 KQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240

[Close]
BLAST of Cucsa.159590 vs. TrEMBL
Match: A0A0A0LRL0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G363560 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 2.9e-142
Identity = 260/287 (90.59%), Postives = 260/287 (90.59%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60
           MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSF 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK         
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK--------- 180

Query: 181 IILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
                             EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 ------------------EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Cucsa.159590 vs. TrEMBL
Match: E6NU66_JATCU (JHL18I08.10 protein OS=Jatropha curcas GN=JHL18I08.10 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 7.0e-120
Identity = 218/289 (75.43%), Postives = 243/289 (84.08%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSN-LDTGKADRSVWLMKCPLLVAKSWQAHPPS-DSLPLAKVILSLDPLQ 60
           M+++HG+ GS+S  L+T KADRSVWLMKCPL+VAKSWQ+H  S DS P+AKV+LSLDPL+
Sbjct: 1   MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60

Query: 61  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 120
           SD+ S+LQF MEMAG E GN+PKS+SLNMFKDFVPMCVFSE SQG+V+MEGKVEHKFDMK
Sbjct: 61  SDDPSALQFTMEMAGNEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFDMK 120

Query: 121 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPF 180
           PH EN+E YG+LCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GL+SS+SK       
Sbjct: 121 PHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSK------- 180

Query: 181 SFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK 240
                               +KKK APVKQSD+KRTRRDRGELEDIMFKLFERQPNWALK
Sbjct: 181 --------------------DKKKTAPVKQSDMKRTRRDRGELEDIMFKLFERQPNWALK 240

Query: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS ED G +
Sbjct: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDAGAD 262

[Close]
BLAST of Cucsa.159590 vs. TrEMBL
Match: A0A061FCW1_THECC (JHL18I08.10 protein isoform 2 OS=Theobroma cacao GN=TCM_034139 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.9e-118
Identity = 216/289 (74.74%), Postives = 242/289 (83.74%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS--DSLPLAKVILSLDPLQ 60
           M+++H +GG    L+TGKADRSVWLMKCP++VAKSW++H  S  DS P+AKV+LSLDP +
Sbjct: 1   MDEDHSNGGF---LETGKADRSVWLMKCPVVVAKSWKSHTASSSDSQPVAKVVLSLDPRK 60

Query: 61  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 120
            D+ SSLQF MEMAG+E+GN+PKS+SLNMFKDFVPMCVFSE+SQG+V+MEGKVEHKFDMK
Sbjct: 61  PDDPSSLQFTMEMAGSESGNIPKSYSLNMFKDFVPMCVFSESSQGRVAMEGKVEHKFDMK 120

Query: 121 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPF 180
           PH ENLE YG+LCRERTNKSM+KNRQIQVIDNDRGVHMRPMPGMVGLISS  K       
Sbjct: 121 PHEENLEEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSNPK------- 180

Query: 181 SFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK 240
                              Q+KKK APVK +++KRTRRDRGELEDIMFKLFERQPNWALK
Sbjct: 181 -------------------QDKKKAAPVKPTEMKRTRRDRGELEDIMFKLFERQPNWALK 240

Query: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTG E
Sbjct: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGAE 260

[Close]
BLAST of Cucsa.159590 vs. TrEMBL
Match: E0CPG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13370 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.9e-118
Identity = 215/287 (74.91%), Postives = 240/287 (83.62%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60
           ME+E G+  SSSNL+TGKA+RSVWLMKCPL V+KSWQ+H  S+S P+AKV+LSLDPL+S+
Sbjct: 1   MEEEQGNS-SSSNLETGKAERSVWLMKCPLAVSKSWQSHSSSESQPVAKVVLSLDPLRSE 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           + S+L+F MEM GT   N+PKS+SLNMFKDFVPMCVFSE +QG+V+MEGKVEHKFDMKPH
Sbjct: 61  DPSALEFTMEMTGTGAPNMPKSYSLNMFKDFVPMCVFSETNQGRVAMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSF 180
           +EN+E YGKLCRERTNKSM+KNRQIQVIDNDRGVHMRPMPGMVGLI+S SK         
Sbjct: 121 NENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLIASNSK--------- 180

Query: 181 IILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
                             +KKK APVK SD+KRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 ------------------DKKKTAPVKGSDMKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS EDTG E
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGAE 259

[Close]
BLAST of Cucsa.159590 vs. TrEMBL
Match: B9GRH3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03040g PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.1e-117
Identity = 217/292 (74.32%), Postives = 241/292 (82.53%), Query Frame = 1 

Query: 1   MEDEHGSGGSSS---NLDTGKADRSVWLMKCPLLVAKSWQAH--PPSDSLPLAKVILSLD 60
           ME++H +GG+SS   NL+T KAD++VWLMKCP++VAKSW++H    SDS PLAKV+LSLD
Sbjct: 1   MEEDHSNGGNSSSSGNLETSKADKAVWLMKCPVVVAKSWKSHHTSSSDSAPLAKVVLSLD 60

Query: 61  PLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKF 120
           PLQSD+ S++QF MEMA TETGNVPKS+SLNMFKDFVPM VFSE  QG+VSMEGKVEHKF
Sbjct: 61  PLQSDDPSAIQFTMEMARTETGNVPKSYSLNMFKDFVPMGVFSETPQGRVSMEGKVEHKF 120

Query: 121 DMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLF 180
           DMKPH EN+E Y KLCR+RT KSM+KNRQI+VIDNDRGVHMRPMPGMVGLISSTSK    
Sbjct: 121 DMKPHEENIEEYSKLCRDRTKKSMIKNRQIRVIDNDRGVHMRPMPGMVGLISSTSK---- 180

Query: 181 SPFSFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNW 240
                                  +KKK  PVKQSDVKRTRRDRGELEDIMFKLFERQPNW
Sbjct: 181 -----------------------DKKKTQPVKQSDVKRTRRDRGELEDIMFKLFERQPNW 240

Query: 241 ALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           ALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKK+ EDTG +
Sbjct: 241 ALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKTAEDTGAD 265

[Close]
BLAST of Cucsa.159590 vs. TAIR10
Match: AT1G75510.1 (AT1G75510.1 Transcription initiation factor IIF, beta subunit)

HSP 1 Score: 344.7 bits (883), Expect = 5.3e-95
Identity = 183/297 (61.62%), Postives = 214/297 (72.05%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQ--------AHPPSDSLP-LAKVI 60
           MED H       NLD  K+DRS+WLMKCP++V K+W         +   SDS P +AK++
Sbjct: 1   MEDIH-------NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPDMAKIV 60

Query: 61  LSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKV 120
             +DPL+ D  S  +FKM M G E GN+PK ++LNMF DFVPM  FS+ +QG  + EGKV
Sbjct: 61  REVDPLRDD--SPPEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKV 120

Query: 121 EHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK 180
           +HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SK
Sbjct: 121 DHKFDMKPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSK 180

Query: 181 VYLFSPFSFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER 240
                                      EK+K  PVKQ++VKRTRRDRGELE IMFKLFE 
Sbjct: 181 ---------------------------EKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEG 240

Query: 241 QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE 288
           QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTGG+
Sbjct: 241 QPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]
BLAST of Cucsa.159590 vs. TAIR10
Match: AT3G52270.1 (AT3G52270.1 Transcription initiation factor IIF, beta subunit)

HSP 1 Score: 285.0 bits (728), Expect = 5.0e-77
Identity = 148/278 (53.24%), Postives = 192/278 (69.06%), Query Frame = 1 

Query: 14  LDTGKADRSVWLMKCPLLVAKSWQAH--------PPSDSLPLAKVILSLDPLQSDESSSL 73
           L+TG A+RS+ LMK P LVA S Q+H        P     P AKVIL +DPL + E    
Sbjct: 23  LETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPL-AHEDEGT 82

Query: 74  QFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLE 133
           QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+S+EGK+++KFDM+PH+EN+E
Sbjct: 83  QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHNENIE 142

Query: 134 MYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSFIILEL 193
            YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM                       
Sbjct: 143 SYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGM----------------------- 202

Query: 194 LWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETD 253
                 II     EKKK+   + S++KRTRRDR E+E++MF LFERQ NW L+ L+QETD
Sbjct: 203 ------IIPTAAPEKKKLTN-RTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETD 262

Query: 254 QPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED 284
           QP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Sbjct: 263 QPEQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 269

[Close]
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|449469921|ref|XP_004152667.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis sativus])

HSP 1 Score: 512.7 bits (1319), Expect = 4.2e-142
Identity = 260/287 (90.59%), Postives = 260/287 (90.59%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60
           MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD
Sbjct: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSF 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK         
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK--------- 180

Query: 181 IILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
                             EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 ------------------EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|659088035|ref|XP_008444765.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo])

HSP 1 Score: 509.6 bits (1311), Expect = 3.6e-141
Identity = 258/287 (89.90%), Postives = 259/287 (90.24%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSD 60
           MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSD
Sbjct: 1   MEDDHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDPLPLAKVILSLDPLQSD 60

Query: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120
           ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH
Sbjct: 61  ESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKPH 120

Query: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFSF 180
           SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK         
Sbjct: 121 SENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK--------- 180

Query: 181 IILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240
                             EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL
Sbjct: 181 ------------------EKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQL 240

Query: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Sbjct: 241 VQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 260

[Close]
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|802595915|ref|XP_012071957.1| (PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas])

HSP 1 Score: 438.3 bits (1126), Expect = 1.0e-119
Identity = 218/289 (75.43%), Postives = 243/289 (84.08%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSN-LDTGKADRSVWLMKCPLLVAKSWQAHPPS-DSLPLAKVILSLDPLQ 60
           M+++HG+ GS+S  L+T KADRSVWLMKCPL+VAKSWQ+H  S DS P+AKV+LSLDPL+
Sbjct: 1   MDEDHGNNGSNSGVLETAKADRSVWLMKCPLVVAKSWQSHASSSDSHPVAKVVLSLDPLR 60

Query: 61  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 120
           SD+ S+LQF MEMAG E GN+PKS+SLNMFKDFVPMCVFSE SQG+V+MEGKVEHKFDMK
Sbjct: 61  SDDPSALQFTMEMAGNEIGNIPKSYSLNMFKDFVPMCVFSETSQGRVAMEGKVEHKFDMK 120

Query: 121 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPF 180
           PH EN+E YG+LCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGM+GL+SS+SK       
Sbjct: 121 PHEENIEEYGRLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMIGLMSSSSK------- 180

Query: 181 SFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK 240
                               +KKK APVKQSD+KRTRRDRGELEDIMFKLFERQPNWALK
Sbjct: 181 --------------------DKKKTAPVKQSDMKRTRRDRGELEDIMFKLFERQPNWALK 240

Query: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKS ED G +
Sbjct: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDAGAD 262

[Close]
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|1009118711|ref|XP_015876002.1| (PREDICTED: transcription initiation factor IIF subunit beta-like [Ziziphus jujuba])

HSP 1 Score: 436.8 bits (1122), Expect = 2.9e-119
Identity = 218/288 (75.69%), Postives = 240/288 (83.33%), Query Frame = 1 

Query: 1   MEDEHGSGGSSS-NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQS 60
           MEDEHGS GSS+ +++ GKA+RSVWLMKCPL+VAKSWQ+HPPSD  PLAKVI+SLDPL +
Sbjct: 1   MEDEHGSNGSSNGHVEIGKAERSVWLMKCPLVVAKSWQSHPPSDPHPLAKVIVSLDPLHA 60

Query: 61  DESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMKP 120
           D+ SS QF ME+A  ETGN PK++SLNMF DFVPM +FSE +QGKV++EGKVEHKFDM P
Sbjct: 61  DDPSSRQFTMEVAAVETGNKPKNYSLNMFHDFVPMSIFSETNQGKVAVEGKVEHKFDMTP 120

Query: 121 HSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPFS 180
           H EN+E YGKLCRERTNKSM+KNRQIQVIDNDRGVHMRPMPGMVGLISS+SK        
Sbjct: 121 HRENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSSSK-------- 180

Query: 181 FIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQ 240
                              +KKK APVKQSD+KRTRRDRGELEDIMFKLFERQPNWALKQ
Sbjct: 181 -------------------DKKKTAPVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQ 240

Query: 241 LVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           LVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDT  E
Sbjct: 241 LVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTNAE 261

[Close]
BLAST of Cucsa.159590 vs. NCBI nr
Match: gi|590593791|ref|XP_007017671.1| (JHL18I08.10 protein isoform 2 [Theobroma cacao])

HSP 1 Score: 433.0 bits (1112), Expect = 4.2e-118
Identity = 216/289 (74.74%), Postives = 242/289 (83.74%), Query Frame = 1 

Query: 1   MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS--DSLPLAKVILSLDPLQ 60
           M+++H +GG    L+TGKADRSVWLMKCP++VAKSW++H  S  DS P+AKV+LSLDP +
Sbjct: 1   MDEDHSNGGF---LETGKADRSVWLMKCPVVVAKSWKSHTASSSDSQPVAKVVLSLDPRK 60

Query: 61  SDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEHKFDMK 120
            D+ SSLQF MEMAG+E+GN+PKS+SLNMFKDFVPMCVFSE+SQG+V+MEGKVEHKFDMK
Sbjct: 61  PDDPSSLQFTMEMAGSESGNIPKSYSLNMFKDFVPMCVFSESSQGRVAMEGKVEHKFDMK 120

Query: 121 PHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKVYLFSPF 180
           PH ENLE YG+LCRERTNKSM+KNRQIQVIDNDRGVHMRPMPGMVGLISS  K       
Sbjct: 121 PHEENLEEYGRLCRERTNKSMIKNRQIQVIDNDRGVHMRPMPGMVGLISSNPK------- 180

Query: 181 SFIILELLWQYDSIINHLLQEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALK 240
                              Q+KKK APVK +++KRTRRDRGELEDIMFKLFERQPNWALK
Sbjct: 181 -------------------QDKKKAAPVKPTEMKRTRRDRGELEDIMFKLFERQPNWALK 240

Query: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE 288
           QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTG E
Sbjct: 241 QLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGAE 260

The following BLAST results are available for this feature:
BLAST of Cucsa.159590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
T2FB_SCHPO2.4e-2027.97Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe (s... [more]
T2FB_RAT2.1e-1625.18General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=1 S... [more]
T2FB_BOVIN2.1e-1625.18General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1[more]
T2FB_DICDI7.9e-1626.04General transcription factor IIF subunit 2 OS=Dictyostelium discoideum GN=gtf2f2... [more]
T2FB_MOUSE3.0e-1524.82General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1[more]
BLAST of Cucsa.159590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRL0_CUCSA2.9e-14290.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G363560 PE=4 SV=1[more]
E6NU66_JATCU7.0e-12075.43JHL18I08.10 protein OS=Jatropha curcas GN=JHL18I08.10 PE=4 SV=1[more]
A0A061FCW1_THECC2.9e-11874.74JHL18I08.10 protein isoform 2 OS=Theobroma cacao GN=TCM_034139 PE=4 SV=1[more]
E0CPG6_VITVI2.9e-11874.91Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13370 PE=4 SV=... [more]
B9GRH3_POPTR1.1e-11774.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03040g PE=4 SV=1[more]
BLAST of Cucsa.159590 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75510.15.3e-9561.62 Transcription initiation factor IIF, beta subunit[more]
AT3G52270.15.0e-7753.24 Transcription initiation factor IIF, beta subunit[more]
BLAST of Cucsa.159590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469921|ref|XP_004152667.1|4.2e-14290.59PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis sativu... [more]
gi|659088035|ref|XP_008444765.1|3.6e-14189.90PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo][more]
gi|802595915|ref|XP_012071957.1|1.0e-11975.43PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas][more]
gi|1009118711|ref|XP_015876002.1|2.9e-11975.69PREDICTED: transcription initiation factor IIF subunit beta-like [Ziziphus jujub... [more]
gi|590593791|ref|XP_007017671.1|4.2e-11874.74JHL18I08.10 protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003196TFIIF_beta
IPR011039TFIIF_interaction
IPR011991Winged helix-turn-helix DNA-binding domain
IPR003196TFIIF_beta
IPR011039TFIIF_interaction
IPR011991Winged helix-turn-helix DNA-binding domain
Vocabulary: Cellular Component
TermDefinition
GO:0005674transcription factor TFIIF complex
GO:0005674transcription factor TFIIF complex
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription from RNA polymerase II promoter
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0006366transcription from RNA polymerase II promoter
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005674 transcription factor TFIIF complex
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.159590.1Cucsa.159590.1mRNA
Cucsa.159590.2Cucsa.159590.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003196Transcription initiation factor IIF, beta subunitPANTHERPTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2coord: 13..257
score: 8.5E
IPR003196Transcription initiation factor IIF, beta subunitPFAMPF02270TFIIF_betacoord: 100..251
score: 6.0
IPR011039Transcription Factor IIF, Rap30/Rap74, interactionunknownSSF50916Rap30/74 interaction domainscoord: 11..120
score: 3.14
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 186..252
score: 6.5
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 186..252
score: 5.44
NoneNo IPR availablePANTHERPTHR10445:SF1SUBFAMILY NOT NAMEDcoord: 13..257
score: 8.5E