Cucsa.156330 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.156330
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01139 : 661210 .. 661884 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGCGGAGCGGTGGAAGTGTGCTAATTCACATAATTTACCTAATTCGTACCTCGGACTCATCGGCCCATGGGAAACGGAGCGGTAACAACAGGGAGCGAGTGACGCTCGAGGAAAGGAAGGAGCTCATCAAAGGCAGAGAAGCCATGCTGCCTTTGCACAGACTTTTCAGGACGATCCATACAACCCTCGATGCTCCTCAAATTACCACGTTCGCTCTTCATGCACCCAAATATGTAACCCTTTTCCCCACTTATTTTCCTACTGATTTCAATTCTGCTTACCTTTCTCCTTATATCGATCCATTCTTGCCTTTCGATTTCTGGGTTTTTGTGTCGGATTATGATTGGTGATTTGGTATTACAACTCTCCATTTTATTTCGTCTTTCTGGAGTCGTTCGTCGCAATCCCGTTTCTTCCTTTTGCTAATGGGTTTTTAATTTTGGATACTCCCATTTCATTAAGAAATCAGAGGCATGAATTAGGTGGCTGCAATGTTAGAAATTCTGTTGGTGTGCAATTTTTCTTCATTATTTTAGTGAATGTGCTACCGGCCTTGCGGCTAATTTCTTAGATTGGAAACGTACTGGGTTACTACTTAGTAGACTTCTTATTATTTACTTTTTTTTTTTTTAATTAGGAAAAGAATGGGGGCTGCCCAATTTACACAATTTAA

mRNA sequence

GGAGCGGAGCGGTGGAAGTGTGCTAATTCACATAATTTACCTAATTCGTACCTCGGACTCATCGGCCCATGGGAAACGGAGCGGTAACAACAGGGAGCGAGTGACGCTCGAGGAAAGGAAGGAGCTCATCAAAGGCAGAGAAGCCATGCTGCCTTTGCACAGACTTTTCAGGACGATCCATACAACCCTCGATGCTCCTCAAATTACCACGTTCGCTCTTCATGCACCCAAATATGAAAAGAATGGGGGCTGCCcaatttacacaatttaa

Coding sequence (CDS)

GGAGCGGAGCGGTGGAAGTGTGCTAATTCACATAATTTACCTAATTCGTACCTCGGACTCATCGGCCCATGGGAAACGGAGCGGTAACAACAGGGAGCGAGTGACGCTCGAGGAAAGGAAGGAGCTCATCAAAGGCAGAGAAGCCATGCTGCCTTTGCACAGACTTTTCAGGACGATCCATACAACCCTCGATGCTCCTCAAATTACCACGTTCGCTCTTCATGCACCCAAATATGAAAAGAATGGGGGCTGCCCAATTTACACAATTTAA

Protein sequence

ERSGGSVLIHIIYLIRTSDSSAHGKRSGNNRERVTLEERKELIKGREAMLPLHRLFRTIHTTLDAPQITTFALHAPKYEKNGGCPIYTI*

Homology

[Close]

BLAST of Cucsa.156330 vs. NCBI nr
Match: gi|778688690|ref|XP_004145682.2| (PREDICTED: uncharacterized protein LOC101219823 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-33
Identity = 76/78 (97.44%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1   ERSGGSVLIHIIYLIRTSDSSAHGKRSGNNRERVTLEERKELIKGREAMLPLHRLFRTIH 60
           ERSG SVLIHIIYLIRTSDSSAHGKRSGNNRERVTLEERKELIK REAMLPLHRLFRTIH
Sbjct: 307 ERSGESVLIHIIYLIRTSDSSAHGKRSGNNRERVTLEERKELIKCREAMLPLHRLFRTIH 366

Query: 61  TTLDAPQITTFALHAPKY 79
           TTLDAPQITTFALHAPKY
Sbjct: 367 TTLDAPQITTFALHAPKY 384

[Close]

BLAST of Cucsa.156330 vs. NCBI nr
Match: gi|659098262|ref|XP_008450051.1| (PREDICTED: uncharacterized protein LOC103491759 isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-15
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 28 GNNRERVTLEERKELIKGREAMLPLHRLFRTIHTTLDAPQITTFALHAPKY 79
          GNN ERV LEERKELI  RE MLPL+RLFRTIHTTL+APQITTFALHAPKY
Sbjct: 2  GNNSERVRLEERKELIICRETMLPLNRLFRTIHTTLNAPQITTFALHAPKY 52

[Close]

BLAST of Cucsa.156330 vs. NCBI nr
Match: gi|659098264|ref|XP_008450052.1| (PREDICTED: uncharacterized protein LOC103491759 isoform X2 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-15
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 28 GNNRERVTLEERKELIKGREAMLPLHRLFRTIHTTLDAPQITTFALHAPKY 79
          GNN ERV LEERKELI  RE MLPL+RLFRTIHTTL+APQITTFALHAPKY
Sbjct: 2  GNNSERVRLEERKELIICRETMLPLNRLFRTIHTTLNAPQITTFALHAPKY 52

The following BLAST results are available for this feature:

BLAST of Cucsa.156330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688690\|ref\|XP_004145682.2\|	1.0e-33	97.44	PREDICTED: uncharacterized protein LOC101219823 [Cucumis sativus]	[more]
gi\|659098262\|ref\|XP_008450051.1\|	4.7e-15	86.27	PREDICTED: uncharacterized protein LOC103491759 isoform X1 [Cucumis melo]	[more]
gi\|659098264\|ref\|XP_008450052.1\|	4.7e-15	86.27	PREDICTED: uncharacterized protein LOC103491759 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.156330.1	Cucsa.156330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.156330	Cucurbita maxima (Rimu)	cgycmaB0429
Cucsa.156330	Cucurbita maxima (Rimu)	cgycmaB0431
Cucsa.156330	Cucurbita moschata (Rifu)	cgycmoB0429
Cucsa.156330	Cucurbita moschata (Rifu)	cgycmoB0430
Cucsa.156330	Wild cucumber (PI 183967)	cgycpiB228
Cucsa.156330	Cucumber (Chinese Long) v2	cgycuB223
Cucsa.156330	Melon (DHL92) v3.5.1	cgymeB260
Cucsa.156330	Watermelon (Charleston Gray)	cgywcgB261
Cucsa.156330	Cucurbita pepo (Zucchini)	cgycpeB0415
Cucsa.156330	Cucurbita pepo (Zucchini)	cgycpeB0416
Cucsa.156330	Cucurbita pepo (Zucchini)	cgycpeB0418
Cucsa.156330	Bottle gourd (USVL1VR-Ls)	cgylsiB248
Cucsa.156330	Melon (DHL92) v3.6.1	cgymedB259
Cucsa.156330	Silver-seed gourd	carcgyB0427
Cucsa.156330	Silver-seed gourd	carcgyB0503
Cucsa.156330	Cucumber (Chinese Long) v3	cgycucB235
Cucsa.156330	Watermelon (97103) v2	cgywmbB262
Cucsa.156330	Wax gourd	cgywgoB301