Cucsa.154500 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.154500
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Endoplasmic reticulum-Golgi intermediate compartment 3
Location	scaffold01132 : 27640 .. 32803 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATATAATCAGCAAACTTCGGAACTTGGATGCTTACCCTAAAATTAATGAGGATTTCTACAGCCGCACGCTTTCCGGTGGCGTTATCACGCTTTCCTCATCCATTCTTATGCTCTTGCTATTCATATCTGAGCTACGTAGGTTTCTTCCTCCCTGCCTTTTTTCTTCTCTTCCCTACATCCATTATTGAATCTACGTCTTAGTCTTACCCCAATGTGTGTTACAATTCAATTTTATGTTTTTCTCTATGTAGAATCTTTATTTTTCTTTTTTCTTTTTTAATGTTTTCAAGCTTTGATTGGTGTTTACCACTTCCCAGTTGTTGTTCAATGTGGTACATTATTGAGTCATACGTTTACTTTTGTTGGCGCCATTAGTTTTCTCTTTGTCAGATTGCATTGGGGTTATGTATTATCGACAGAGTTTAGTTTATATGTTTATCATCAGAGTTTAACTCATATGTTTACTAATATATCATGCACTCATTAATCTACACTCCAAGTAACTTCCTCCTGCTTCAGAACGGTACTGGTATACTATGGAAAGTGTTAAGGTCCTTGGGGGCTCTGTATTTTGGTATCAGTGCAATTGATTTTTtGTTTtCTTGCTGTTCTTGCCTGAGCATATGCTCTCTAATGCTTGAAAATCTCATTGGTTGCAGGGTTATATCTCCATGCTGTAACAGAAACCAAGCTCGTAGTTGATACATCAAGGGGAGAAACCCTTCGTATCAATGTAATCCCACATTGTTTCTGGATATTTCTAATATTATGCATCAAAATCTGTTTTtCTTTtCTCTCTTGGAAATTATACATCTTCTTTTTTATTTTCAGTTTGATGTTACCTTTCCTGCCCTTCCTTGTTCTTTATTAAGTCTTGATGCAATGGACATCAGTGGAGAGCAACACCTGGATGTGGTGCGTATGATGATTGCATAGTCTTTTCTCTCCTTGTCTAAAATATGTAAATTATTTGAAATTGAGTTGTTAAGTGCATGCCATGAATGTATGGTGCAAGATTTACATATTGTTTTCCCCTGTATGCAGAAACATGACATAATCAAAAAAAGGTTGGACTCTCATGGCAATGCTATCGAAGCTAGACCAGATGGGATTGGTGCACCTAAGGTTCGTAATGTTCCAACAATTTAAATTCCTATTACTTCCTTTCTCTTTTTCCATTTGTTGAACCATATGGAACTAATCCAATCTATGCTCAATAGGAAACTCTCTCATCTAGTCACCATTGATTCGGCTTTGGATTATATATATTTTTAGATTGCCATAACTTTTGAAAAATGATTTATTGATAGTTGTTGATTTTATTTAGTATTACTGTATTAGACCAATCCAAAACCAACCAACAAATGATTTATTCGCAGCTCCCTTAGACTAGAACTCTGTTATTCTTCTTTCAGAATAGATTTGTATATGCAGTGTATCTTTGTGAGAATGTAATTGGGGAAAACACATGCAGCTAGATAATGAAGTATTTTATCAGAAATACAAAAATTGGTGTAGTGGGTTTAGTTTCCTAAGTTGAAGATTAGGGATGCTCATCTGCGGACATTTTAAGATTGGTGTAGTGGGTTTGGTTTAAGTTGAAGATTAATGATTTAGAGTTAAAGCTTTGCTGCATTGATGTGAAGAAAATGATATTGTGTTTAATCTACTACCCAAGTGAACCAAAGGATGAGGCACGGTGTAGGATAGAATGGATGCAATATGATAAATGATGGTTTAAATGCATTGGGACTCTAACGCACCAGAACAAGTTGAAGAACTCGAGAGGCCGTTTACTGAATCAGAGATTTGGAGGGCCATGTCCAACCTTCACCGTACTAGACAGGCCCACCAGGGAATTCTTTAGAAAGCTTTAGAACATTCTTAAGGCAGATAATACAAGGGTGTTCAAAGACTTTTTGATAACTTCATTACTAGCGTCAACCCTAACGAGATTTATAAGTTATATCTCCCCCATCCCCAAAAAATCAGATGAGAGAATGGTGGGAGACTATAAACCCTTGATAATGTATTGACAATTAAAGGACTTGGAGTCAACTGGAGGAAATGGATTAAAGGTTGTATTTCCACACCATTGCTTATTAATCATGGACAAAAGAGGGGGTGATCACTAAACTTGTCATCAAAAAGGCTTTCAACATTGTCGATTGGGACTTCCTTGACAATATATTGACAGTTAAAGGATTTGGGACCAAATGGAGGAAATGGGTCAAAGGTTGTATTTCCACAACATTGTGGATGTTTGGATTAAACTCCTCATCTCCGAAGGTGGCCTTGGGTTTAATGACATTAAAATTAAAAATCAAAGCCTCCTTGCCAAGTGGATTTGGAGATACCGTGGGGAAATTTTGACCCTTTAGAGATGTACGTACCTTTAGGTGTTGGGTTTCCTCTATTACTTTCATTTGGTGAAATGGTTCTTTATCCTAAAAaTAAAAaGTATTATTGATGCGAAGTATATCTCTTCTCTCCAACCGAGCCAACCTACTCTCAAACTGTTCAGGAGGCCACGAAAATTTATCATCCAGCAAAAGGATTTGATTCTCTACAACATTATGTGCAATATTGGAAATGGGGCACTTTTCTTCCCTTAAGCATGCTTTTCCAGATTATATGCTCTTACCTTCACAAAAAATCCAACACTACATCTTGAGATTTACATTTGAGAAGACATCTCACCGGAAACGAAATCATCGAATGGTCCCACCTATCTACTATTATTTCCCCCCTCCCCATCCCCTGATGGAGGATGGATGAAAATGGCCCATGGATTCAAAAGGATCATTCACAGACTCACAGTTAGGTCTGTATCCTATATAAACTTTTTCTAGTGAAATCACCCATCTAAAAGATCTATACCCTACTATCATCTGGAAAGGACTCATCCCACCCCTAAGTAGTGTACCTTTTGTCACAAGAACAATCAAACTATTATGCCCCCCTTCGTCAACTGTGAATCTGCTCATGGCTTTTGGTCCAAGTTATTGGGGGCTCTCAACTACCCCATGGTTTTTCGTGATAACACACTGATCCTCCTAGTGGCACTCCTCATTAGTCACCTTTTCAAAAAGGAAAAAGAGGTCATTTGGAATTGCTTTGTTAAAACCTTTTTTTGGCTTATCTGGTTTGAACGAGACTGGAGAATCTTTGATGTCAAAGCTATGGATTTCTCTTTTTTTTTTttAACATCTCATATACATAACTTTCTCTTGGTGTAAATTTACCACATTCTTTTGTGATTACAGTCTACTCCTATTATATCCCAGTGAAACTGTCTCATGTAATCATCATTTACCCTTTTGTTAATTCATTTGATCAAATTAAATCACCATTGACGTTTCTCATAAAAAATAATGCCTTTTCTCAATCTGGCATTACTGCTGTTATTTAATTTCCCTTTTTTGGCTATTCTTCATTTGACGTTGCACAGATTGAAAAGCCCTTACAGAGACATGGTGGTAGGCTTGAGCACAATGAGACATATTGTGGTTCCTGCTTTGGAGCTGAATCAGTAAGAACTTTTCTTTCCTTTTTCTTATtCTTTTTTTtCCTTTTAGTTTTATATTTATTTATTTATTTTTATGAATACCTGAAATTTCTGTCAAAAAATTGAAGAAATACAAGGGGATACAAAAATAAAAaCCCATAAAAATATGAACGTTTTTGTCATATTAGTAATTGTTGAATGTAGTTTCTTGGTTGCATGACTTGCCTCTAAATAATTGATATGTTAGAAATTCTTATAGAAGCTGATGAGGCTGTTTTGGTGTTAGGTTGACTGTGCAATCCTATAAGTGATATCATATAACCATGTCCAGTTATTTTGATACATTTAATTAGTGTAATTGGACTGAATGAATTAAACCGTTGGCAGTGGTTATGTCATTTCGAGTTGtACTTTTtTTTTTtCTTTTCTTCTTGTATTCCTTTCTGTTCTCTCTTCTTCCTTTTAAGAGGTGGCTCATTGTGGATTAACATATTTGGTTCTACATCCTTCCTCCTGCTCTCTCACAGTCACTTAACCCTTTTTTtATGAAAAAAAAAAaaTCTCTAATATTTGCAGGCAGATGATGATTGTTGCAATTCGTGTGAGGAAGTTCGTGAGGCTTATCGAAAGAAAGGATGGGCTTTGTCAAACCCAGATTTGATTGACCAGGTTTGTCAGGACAAGGCTCCTATTTTACAGATTCCTTTTATCCATACAATTTTCAAGTTGGCTTCCAACCAAGTTTGTTTATCTGGAATTAATTGTACAAATGTATTCATATGGAACCTCTGCGTGTTTTTTtAATTCGGAACTTGAATTTTATTAAAACATAAATATCTTATGTTTAACTTATCTACTAATTGACATGGGTGATACCTTCCATCTTTTGGCCATCCTGGCCATGATGATGTTTTCTGCTCTGCGTTTTGTGATATAACTTCTTGACATACATGTGAACTATTGCAGCTGATCTTGAAAGCATAATAATCCCATAGTTCAAAGATTTTTTGATGATGCTCATTGATTGTGACCTATATCTGGGATACAATGTTGATCTCAGATTTCATTGAACTATAGCTTACCCCAGCTTTTTtATGTACAATCCAGTTGTCTTGAGCAATCTTTAGAGAATTTTCTATCAATGCATCTGCTATTTATCATTGGGCTTTTTAGGCTTTCTATTTATTAATTCTTTTATATGAAACTTTATTGTTATCATTATTAAACTGGGTTTTATGAACATTGTTTTTCCTTCCATTATTATGTAGTCTTTATTTTATGCAAGGAGCATCAGTTAGAGAATATAGTTTTTCTAGGGATACCTTGCTGACCCTTAAATTTTCTCTAAATGTCATCTGGAATAATATTAGTTACCTGATACTATAGGGATTACAGTTTTCTGTTAATGGGATTATTTTAAGTATGATCTTGTCTTATTCATTATCGTACCAAATCTTTATGACGTTCAGTGCAAAAGAGAAGGGTTTCTTCAACGGATCAAAGATGAGGATGGTGAAGGATGCAATATATACGGATTTTTGGAGGTTAATAAGGTTGCTGGAAATTTCCATTTCGCACCTGGGAAAAGTTTTCAACAGTCGAATGTTCATGTTCACGATCTGTTGGCTTTCCAAAAGGATAGCTTCAAT

mRNA sequence

ATGGATAATATAATCAGCAAACTTCGGAACTTGGATGCTTACCCTAAAATTAATGAGGATTTCTACAGCCGCACGCTTTCCGGTGGCGTTATCACGCTTTCCTCATCCATTCTTATGCTCTTGCTATTCATATCTGAGCTACagggggtgatcactaaacttgtcatcaaaaaggctttcaacattgtcgattgggacttccttgacaatatattgacagttaaaggatttgggaccaaatggaGGAAATGGGTCAAAGGTTGTATTTCCACAACATTGTGGATGTTTGGATTAAACTCCTCATCTCCGAAGTGCAAAAGAGAAGGGTTTCTTCAACGGATCAAAGATGAGGATGGTGAAGGATGCAATATATACGGATTTTTGGAGGTTAATAAGGTTGCTGGAAATTTCCATTTCGCACCTGGGAAAAGTTTTCAACAGTCGAATGTTCATGTTCACGATCTGTTGGCTTTCCAAAAGGATAGCTTCAAT

Coding sequence (CDS)

ATGGATAATATAATCAGCAAACTTCGGAACTTGGATGCTTACCCTAAAATTAATGAGGATTTCTACAGCCGCACGCTTTCCGGTGGCGTTATCACGCTTTCCTCATCCATTCTTATGCTCTTGCTATTCATATCTGAGCTACAGGGGGTGATCACTAAACTTGTCATCAAAAAGGCTTTCAACATTGTCGATTGGGACTTCCTTGACAATATATTGACAGTTAAAGGATTTGGGACCAAATGGAGGAAATGGGTCAAAGGTTGTATTTCCACAACATTGTGGATGTTTGGATTAAACTCCTCATCTCCGAAGTGCAAAAGAGAAGGGTTTCTTCAACGGATCAAAGATGAGGATGGTGAAGGATGCAATATATACGGATTTTTGGAGGTTAATAAGGTTGCTGGAAATTTCCATTTCGCACCTGGGAAAAGTTTTCAACAGTCGAATGTTCATGTTCACGATCTGTTGGCTTTCCAAAAGGATAGCTTCAAT

Protein sequence

MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVITKLVIKKAFNIVDWDFLDNILTVKGFGTKWRKWVKGCISTTLWMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFN

Homology

[Close]

BLAST of Cucsa.154500 vs. Swiss-Prot
Match: ERGI3_XENTR (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.4e-22
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W F    S  +CKREGF Q+++++  EGC +YGFLEVNKVAGNFHFAPGKSFQQS+VHVH
Sbjct: 172 WAFKTPDSIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVH 231

Query: 154 DLLAFQKDSFN 165
           DL +F  D+ N
Sbjct: 232 DLQSFGLDNIN 242

HSP 2 Score: 54.3 bits (129), Expect = 1.5e-06
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 5  ISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVITKLVIKKAF 61
          + +LR  DAYPK  EDF  +T  G ++T+ S ++ML+LF SELQ  +TK +  + F
Sbjct: 4  LHRLRQFDAYPKTLEDFRVKTCGGALVTVISGLIMLILFFSELQYYLTKEIYPELF 59

[Close]

BLAST of Cucsa.154500 vs. Swiss-Prot
Match: ERGI3_DANRE (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-21
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W F    +  +CKREGF Q+++++  EGC +YGFLEVNKVAGNFHFAPGKSFQQS+VHVH
Sbjct: 171 WAFKTPDTIEQCKREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVH 230

Query: 154 DLLAFQKDSFN 165
           DL +F  D+ N
Sbjct: 231 DLQSFGLDNIN 241

HSP 2 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1


Query: 5  ISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVITKLVIKKAF 61
          ++KL+  DAYPK  EDF  +T  G  +T+ S ++ML+LF SELQ  +TK V  + F
Sbjct: 4  LNKLKQFDAYPKTLEDFRIKTCGGATVTIISGLIMLILFFSELQYYLTKEVHPELF 59

[Close]

BLAST of Cucsa.154500 vs. Swiss-Prot
Match: ERGI3_PONAB (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-21
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W F    +  +C+REGF Q+++++  EGC +YGFLEVNKVAGNFHFAPGKSFQQS+VHVH
Sbjct: 171 WAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVH 230

Query: 154 DLLAFQKDSFN 165
           DL +F  D+ N
Sbjct: 231 DLQSFGLDNIN 241

HSP 2 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 5  ISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVIT 53
          + KL+  DAYPK  EDF  +T  G  +T+ S +LMLLLF+SELQ  +T
Sbjct: 4  LGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLT 51

[Close]

BLAST of Cucsa.154500 vs. Swiss-Prot
Match: ERGI3_MOUSE (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-21
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W F    +  +C+REGF Q+++++  EGC +YGFLEVNKVAGNFHFAPGKSFQQS+VHVH
Sbjct: 171 WAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVH 230

Query: 154 DLLAFQKDSFN 165
           DL +F  D+ N
Sbjct: 231 DLQSFGLDNIN 241

HSP 2 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 5  ISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVIT 53
          + KL+  DAYPK  EDF  +T  G  +T+ S +LMLLLF+SELQ  +T
Sbjct: 4  LGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLT 51

[Close]

BLAST of Cucsa.154500 vs. Swiss-Prot
Match: ERGI3_BOVIN (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-21
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W F    +  +C+REGF Q+++++  EGC +YGFLEVNKVAGNFHFAPGKSFQQS+VHVH
Sbjct: 171 WAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVH 230

Query: 154 DLLAFQKDSFN 165
           DL +F  D+ N
Sbjct: 231 DLQSFGLDNIN 241

HSP 2 Score: 53.5 bits (127), Expect = 2.5e-06
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1


Query: 5  ISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVIT 53
          + KL+  DAYPK  EDF  +T  G  +T+ S +LMLLLF+SELQ  +T
Sbjct: 4  LGKLKQFDAYPKTLEDFRVKTCGGATVTIVSGLLMLLLFLSELQYYLT 51

[Close]

BLAST of Cucsa.154500 vs. TrEMBL
Match: A0A0A0LJU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G307840 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. TrEMBL
Match: A0A0A0LJU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G307840 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-16
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISEL+  +     TKLV
Sbjct: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELRLYLHAVTETKLV 60

HSP 2 Score: 129.4 bits (324), Expect = 4.0e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. TrEMBL
Match: M5XT11_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007001mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-14
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          M+N++S+LRNLDAYPKINEDFYSRTLSGGVITL+SSI+MLLLF+SEL+  +     TKLV
Sbjct: 1  MENMMSRLRNLDAYPKINEDFYSRTLSGGVITLASSIVMLLLFLSELRLYLHAVTETKLV 60

HSP 2 Score: 129.4 bits (324), Expect = 4.0e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. TrEMBL
Match: B9RJH7_RICCO (Endoplasmic reticulum-Golgi intermediate compartment protein, putative OS=Ricinus communis GN=RCOM_1034540 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-14
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQ 49
          M+ I++KLRNLDAYPKINEDFYSRTLSGGVITL+SSILMLLLFISEL+
Sbjct: 1  MEGIMNKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFISELR 48

HSP 2 Score: 129.4 bits (324), Expect = 4.0e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. TrEMBL
Match: A0A067LB71_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15766 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          M+ ++SKLR+LDAYPKINEDFYSRT SGGVIT++SSI+MLLLFISEL+  +     TKLV
Sbjct: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISELRLYLHAVTETKLV 60

HSP 2 Score: 129.0 bits (323), Expect = 5.2e-27
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSN+HVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNIHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. TAIR10
Match: AT1G36050.1 (AT1G36050.1 Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-29
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQR+KDE+GEGCNIYGFLEVNKVAGNFHFAPGKSF QS VHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRVKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

HSP 2 Score: 78.6 bits (192), Expect = 4.1e-15
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          M  I++KLRNLDAYPKINEDFYSRTLSGGVITL SS++M LLF SEL+  +     TKL+
Sbjct: 1  MAGILNKLRNLDAYPKINEDFYSRTLSGGVITLLSSVVMFLLFFSELRLYLHTVTETKLI 60

[Close]

BLAST of Cucsa.154500 vs. TAIR10
Match: AT1G22200.1 (AT1G22200.1 Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.6e-22
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 94  WMFGLNSSSPKCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVH 153
           W      S  +CKREGF+Q++KDE+GEGCN++GFLEVNKVAGNFHF PG+SF QS    H
Sbjct: 175 WALSDPESIDQCKREGFVQKVKDEEGEGCNVHGFLEVNKVAGNFHFIPGQSFHQSGFQFH 234

Query: 154 DLLAFQKDSFN 165
           D+L FQ+ ++N
Sbjct: 235 DMLLFQQGNYN 245

HSP 2 Score: 77.8 bits (190), Expect = 6.9e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQ 49
          M  ++++LRNLDAYPKINEDFY RTLSGGVITL+SSI+ML+LF SELQ
Sbjct: 1  MVGVMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQ 48

[Close]

BLAST of Cucsa.154500 vs. TAIR10
Match: AT3G22290.1 (AT3G22290.1 Endoplasmic reticulum vesicle transporter protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.6e-06
Identity = 44/193 (22.80%), Postives = 75/193 (38.86%), Query Frame = 1


Query: 8   LRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVITKLVIKKA-------- 67
           LR++DA+P+  +    +T SG V+++   ++M  LF+ EL   +  L + +         
Sbjct: 7   LRSIDAFPRAEDHLLQKTQSGAVVSIVGLLIMATLFLHELSYYLNTLTVHQMSVDLKRGE 66

Query: 68  -----FNIVDWDFLDNILTVKGFGTKWRKWVKGCISTTLWMFGLNS-------------- 127
                 N+       ++L+V       +  V   + T +W   LNS              
Sbjct: 67  TLPIHVNMTFPSLPCDVLSVDAIDMSGKHEVD--LDTNIWKLRLNSHGHIIGTEYISDLV 126

Query: 128 -------SSPKCKREG------------------------FLQRIKD--EDGEGCNIYGF 141
                   SP  K +G                         ++++K    DGEGC +YG 
Sbjct: 127 EKGHEHGHSPH-KHDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEGCRVYGV 186

[Close]

BLAST of Cucsa.154500 vs. NCBI nr
Match: gi|449465886|ref|XP_004150658.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. NCBI nr
Match: gi|449465886|ref|XP_004150658.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 4.5e-16
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISEL+  +     TKLV
Sbjct: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELRLYLHAVTETKLV 60

HSP 2 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. NCBI nr
Match: gi|659089137|ref|XP_008445347.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.9e-15
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLV 57
          MDNII KLRNLDAYPKINEDFYSRTLSGGVITL+SSILMLLLFISEL+  +     TKLV
Sbjct: 1  MDNIIGKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFISELRLYLHAVTETKLV 60

HSP 2 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQ+IKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 184 QCKREGFLQKIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 243

Query: 164 N 165
           N
Sbjct: 244 N 244

[Close]

BLAST of Cucsa.154500 vs. NCBI nr
Match: gi|720016797|ref|XP_010261264.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Nelumbo nucifera])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 3  NIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQGVI-----TKLVI 57
          +I +KLRNLDAYPKINEDFYSRTLSGGVITL SS++MLLLFISEL+  +     TKLV+
Sbjct: 2  DIFNKLRNLDAYPKINEDFYSRTLSGGVITLVSSVVMLLLFISELRLYLHAVTETKLVV 60

HSP 2 Score: 129.4 bits (324), Expect = 5.7e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

[Close]

BLAST of Cucsa.154500 vs. NCBI nr
Match: gi|255545672|ref|XP_002513896.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Ricinus communis])

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1


Query: 1  MDNIISKLRNLDAYPKINEDFYSRTLSGGVITLSSSILMLLLFISELQ 49
          M+ I++KLRNLDAYPKINEDFYSRTLSGGVITL+SSILMLLLFISEL+
Sbjct: 1  MEGIMNKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFISELR 48

HSP 2 Score: 129.4 bits (324), Expect = 5.7e-27
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 104 KCKREGFLQRIKDEDGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 163
           +CKREGFLQRIKDE+GEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF
Sbjct: 185 QCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSF 244

Query: 164 N 165
           N
Sbjct: 245 N 245

The following BLAST results are available for this feature:

BLAST of Cucsa.154500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERGI3_XENTR	9.4e-22	64.79	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropic...	[more]
ERGI3_DANRE	2.1e-21	63.38	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN...	[more]
ERGI3_PONAB	8.0e-21	61.97	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii G...	[more]
ERGI3_MOUSE	8.0e-21	61.97	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus G...	[more]
ERGI3_BOVIN	8.0e-21	61.97	Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=...	[more]

BLAST of Cucsa.154500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJU3_CUCSA	1.4e-27	98.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G307840 PE=4 SV=1	[more]
A0A0A0LJU3_CUCSA	3.2e-16	83.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G307840 PE=4 SV=1	[more]
M5XT11_PRUPE	8.6e-14	72.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007001mg PE=4 SV=1	[more]
B9RJH7_RICCO	8.6e-14	87.50	Endoplasmic reticulum-Golgi intermediate compartment protein, putative OS=Ricinu...	[more]
A0A067LB71_JATCU	2.1e-12	68.85	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15766 PE=4 SV=1	[more]

BLAST of Cucsa.154500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36050.1	5.0e-29	91.80	Endoplasmic reticulum vesicle transporter protein	[more]
AT1G22200.1	2.6e-22	60.56	Endoplasmic reticulum vesicle transporter protein	[more]
AT3G22290.1	2.6e-06	22.80	Endoplasmic reticulum vesicle transporter protein	[more]

BLAST of Cucsa.154500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465886\|ref\|XP_004150658.1\|	2.0e-27	98.36	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [...	[more]
gi\|449465886\|ref\|XP_004150658.1\|	4.5e-16	83.61	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [...	[more]
gi\|659089137\|ref\|XP_008445347.1\|	2.9e-15	80.33	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [...	[more]
gi\|720016797\|ref\|XP_010261264.1\|	3.0e-12	72.88	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [...	[more]
gi\|255545672\|ref\|XP_002513896.1\|	1.2e-13	87.50	PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Ricin...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012936	Erv_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.154500.1	Cucsa.154500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012936	Endoplasmic reticulum vesicle transporter, C-terminal	PFAM	PF07970	COPIIcoated_ERV	coord: 93..164 score: 6.3
None	No IPR available	PANTHER	PTHR10984	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	coord: 1..164 score: 1.8
None	No IPR available	PANTHER	PTHR10984:SF25	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 3	coord: 1..164 score: 1.8
None	No IPR available	PFAM	PF13850	ERGIC_N	coord: 8..56 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.154500	Cla022084	Watermelon (97103) v1	cgywmB273
Cucsa.154500	Csa2G307840	Cucumber (Chinese Long) v2	cgycuB221
Cucsa.154500	MELO3C011363	Melon (DHL92) v3.5.1	cgymeB258
Cucsa.154500	ClCG08G011000	Watermelon (Charleston Gray)	cgywcgB259
Cucsa.154500	CSPI02G15850	Wild cucumber (PI 183967)	cgycpiB226
Cucsa.154500	CmaCh12G001490	Cucurbita maxima (Rimu)	cgycmaB0425
Cucsa.154500	CmaCh05G004900	Cucurbita maxima (Rimu)	cgycmaB0426
Cucsa.154500	CmoCh05G005130	Cucurbita moschata (Rifu)	cgycmoB0425
Cucsa.154500	Lsi08G009540	Bottle gourd (USVL1VR-Ls)	cgylsiB246
Cucsa.154500	Cp4.1LG11g04380	Cucurbita pepo (Zucchini)	cgycpeB0411
Cucsa.154500	Cp4.1LG07g01370	Cucurbita pepo (Zucchini)	cgycpeB0412
Cucsa.154500	MELO3C011363.2	Melon (DHL92) v3.6.1	cgymedB256
Cucsa.154500	CsaV3_1G022910	Cucumber (Chinese Long) v3	cgycucB233
Cucsa.154500	Cla97C08G153930	Watermelon (97103) v2	cgywmbB260
Cucsa.154500	Bhi04G000612	Wax gourd	cgywgoB299
Cucsa.154500	Carg09219	Silver-seed gourd	carcgyB0170
Cucsa.154500	Carg20547	Silver-seed gourd	carcgyB0726

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None