Cucsa.149670 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.149670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationscaffold01110 : 524509 .. 524944 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATAGTGATTGGGGAGAAAATATTGATGATTTCAAAAGTACTTCTGGGTATGTATTTAATATTGGTTCTCGAGCAGTTTCATGGACATCAAGGAAGCAAGATGTTATAGCATTATCAACAACAGAAGCTGAATACATTTATTTGTCTGTTGCTAGTTGTCAAGCACTTTGGCTAAGAAATGCACTACATGAATTGAAGTGTCCTCAAGAGAAATGGACCATCATGTTCTGTGATAATCAATCATCTATTTCACTTTCAAAGAATCCCGTTTTTCATGGAAGAAGCAAACATATAAAGATCAAGGATCATTTCATCAGAAAATATCAAGTATTACAAGACCCAATATCAAGTTGCAGACATATTCACAAAAGCATTAAAGACAGATTCATTCTTGAAAATGAAAGAGAAGCTCAGAGTTTGGGAAGTCTAGCTTAA

mRNA sequence

tgatagtgattggggagaaaatattgatgatttcaaaagtacttctgggtatgtatttaatattggttctcgagcagtttcatggacatcaaggaagcaagatgttatagcattatcaacaacagaagctgaatacatttatttgtctgttgctagttgtcaagcactttggctaagaaatgcactacatgaattgaagtgtcctcaagagaaatggaccatcatgttctgtgataatcaatcatctatttcactttcaaagaatcccgtttttcatggaagaagcaaacatataaagatcaaggatcatttcatcagaaaaTATCAAGTATTACAAGACCCAATATCAAGTTGCAGACATATTCACAAAAGCATTAAAGACAGATTCATTCTTGAAAATGAAAGAGAAGCTCAGAGTTTGGGAAGTCTAGCTTAA

Coding sequence (CDS)

TGATAGTGATTGGGGAGAAAATATTGATGATTTCAAAAGTACTTCTGGGTATGTATTTAATATTGGTTCTCGAGCAGTTTCATGGACATCAAGGAAGCAAGATGTTATAGCATTATCAACAACAGAAGCTGAATACATTTATTTGTCTGTTGCTAGTTGTCAAGCACTTTGGCTAAGAAATGCACTACATGAATTGAAGTGTCCTCAAGAGAAATGGACCATCATGTTCTGTGATAATCAATCATCTATTTCACTTTCAAAGAATCCCGTTTTTCATGGAAGAAGCAAACATATAAAGATCAAGGATCATTTCATCAGAAAATATCAAGTATTACAAGACCCAATATCAAGTTGCAGACATATTCACAAAAGCATTAAAGACAGATTCATTCTTGAAAATGAAAGAGAAGCTCAGAGTTTGGGAAGTCTAGCTTAA

Protein sequence

DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRNALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRKYQVLQDPISSCRHIHKSIKDRFILENEREAQSLGSLA*
Homology
[Close]
BLAST of Cucsa.149670 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-21
Identity = 47/107 (43.93%), Postives = 75/107 (70.09%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            D+D   +ID+ KS++GY+F     A+SW S+ Q  +ALSTTEAEYI  +    + +WL+ 
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKR 1239

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L EL   Q+++ +++CD+QS+I LSKN ++H R+KHI ++ H+IR+
Sbjct: 1240 FLQELGLHQKEY-VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIRE 1285

[Close]
BLAST of Cucsa.149670 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 6.8e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGS-RAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLR 60
            DSDW  +  D KST+GY+F +     + W +++Q+ +A S+TEAEY+ L  A  +ALWL+
Sbjct: 1253 DSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLK 1312

Query: 61   NALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
              L  +    E    ++ DNQ  IS++ NP  H R+KHI IK HF R+
Sbjct: 1313 FLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFARE 1360

[Close]
BLAST of Cucsa.149670 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-36
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSDWG N+DD +STSGYVF++GS   SWTS+KQ V+ LSTTEAEYI L+ A CQALWLR 
Sbjct: 1132 DSDWGGNVDDHRSTSGYVFSMGSGVFSWTSKKQSVVTLSTTEAEYISLAAAGCQALWLRW 1191

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIR 107
             L ELKC Q+  T++FCDN S+I+LSKNPVFHGRSKHI+IK HFI+
Sbjct: 1192 MLKELKCTQKCETVLFCDNGSAIALSKNPVFHGRSKHIRIKYHFIK 1237

[Close]
BLAST of Cucsa.149670 vs. TrEMBL
Match: Q9FH39_ARATH (Copia-type polyprotein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1183 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1242

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1243 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1289

[Close]
BLAST of Cucsa.149670 vs. TrEMBL
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 OS=Arabidopsis thaliana GN=T9G5.7 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1183 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1242

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1243 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1289

[Close]
BLAST of Cucsa.149670 vs. TrEMBL
Match: Q9LPK1_ARATH (F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1056 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1115

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1116 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1162

[Close]
BLAST of Cucsa.149670 vs. TrEMBL
Match: B6REL8_9BRAS (Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSDW   + D KSTSG+VFN+GS AV W+S+KQ+V ALS++EAEY   + A+CQA+WLR 
Sbjct: 1008 DSDWAGCVQDRKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRR 1067

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIR 107
             L ++K  QEK T +FCDN+++I+++KNP +HGR+KHI IK HFIR
Sbjct: 1068 ILADIKQEQEKATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIR 1113

[Close]
BLAST of Cucsa.149670 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 94.7 bits (234), Expect = 4.9e-20
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1 

Query: 9   DDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRNALHELKCP 68
           D  +ST+GY   +G+  +SW S+KQ V++ S+ EAEY  LS A+ + +WL     EL+ P
Sbjct: 455 DTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLP 514

Query: 69  QEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRKYQVLQDPIS 117
             K T++FCDN ++I ++ N VFH R+KHI+   H +R+  V Q  +S
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATLS 562

[Close]
BLAST of Cucsa.149670 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-36
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSDWG N+DD +STSGYVF++GS   SWTS+KQ V+ LSTTEAEYI L+ A CQALWLR 
Sbjct: 1132 DSDWGGNVDDHRSTSGYVFSMGSGVFSWTSKKQSVVTLSTTEAEYISLAAAGCQALWLRW 1191

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIR 107
             L ELKC Q+  T++FCDN S+I+LSKNPVFHGRSKHI+IK HFI+
Sbjct: 1192 MLKELKCTQKCETVLFCDNGSAIALSKNPVFHGRSKHIRIKYHFIK 1237

[Close]
BLAST of Cucsa.149670 vs. NCBI nr
Match: gi|10177935|dbj|BAB11200.1| (copia-type polyprotein [Arabidopsis thaliana])

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1183 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1242

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1243 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1289

[Close]
BLAST of Cucsa.149670 vs. NCBI nr
Match: gi|12322452|gb|AAG51247.1|AC055769_6 (copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana])

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1183 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1242

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1243 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1289

[Close]
BLAST of Cucsa.149670 vs. NCBI nr
Match: gi|12039053|gb|AAF25964.2|AC017118_1 (F6N18.1 [Arabidopsis thaliana])

HSP 1 Score: 142.1 bits (357), Expect = 7.5e-31
Identity = 62/107 (57.94%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSD+  ++DD KSTSGYVF +G  A++W S+KQ ++ LSTTEAE++  S  +CQA+WLRN
Sbjct: 1056 DSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRN 1115

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIRK 108
             L E+ C QE  T++FCDN S+I LSKNPV HGRSKHI ++ HF+R+
Sbjct: 1116 VLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHIHVRYHFLRE 1162

[Close]
BLAST of Cucsa.149670 vs. NCBI nr
Match: gi|158578541|gb|ABW74566.1| (integrase [Boechera divaricarpa])

HSP 1 Score: 136.7 bits (343), Expect = 3.2e-29
Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 1    DSDWGENIDDFKSTSGYVFNIGSRAVSWTSRKQDVIALSTTEAEYIYLSVASCQALWLRN 60
            DSDW   + D KSTSG+VFN+GS AV W+S+KQ+V ALS++EAEY   + A+CQA+WLR 
Sbjct: 1008 DSDWAGCVQDRKSTSGHVFNLGSGAVCWSSKKQNVTALSSSEAEYTAATAAACQAVWLRR 1067

Query: 61   ALHELKCPQEKWTIMFCDNQSSISLSKNPVFHGRSKHIKIKDHFIR 107
             L ++K  QEK T +FCDN+++I+++KNP +HGR+KHI IK HFIR
Sbjct: 1068 ILADIKQEQEKATTIFCDNKATIAMNKNPAYHGRTKHISIKVHFIR 1113

The following BLAST results are available for this feature:
BLAST of Cucsa.149670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC7.0e-2143.93Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
COPIA_DROME6.8e-1641.67Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
BLAST of Cucsa.149670 vs. TrEMBL
Match NameE-valueIdentityDescription
A6YTD9_CUCME3.2e-3669.81Integrase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Q9FH39_ARATH5.2e-3157.94Copia-type polyprotein OS=Arabidopsis thaliana PE=4 SV=1[more]
Q9C7Y1_ARATH5.2e-3157.94Copia-type polyprotein, putative; 28768-32772 OS=Arabidopsis thaliana GN=T9G5.7 ... [more]
Q9LPK1_ARATH5.2e-3157.94F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2[more]
B6REL8_9BRAS2.2e-2958.49Integrase OS=Boechera divaricarpa GN=TnInt1 PE=4 SV=1[more]
BLAST of Cucsa.149670 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.14.9e-2041.67 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
BLAST of Cucsa.149670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|150036244|gb|ABR67407.1|4.5e-3669.81integrase [Cucumis melo subsp. melo][more]
gi|10177935|dbj|BAB11200.1|7.5e-3157.94copia-type polyprotein [Arabidopsis thaliana][more]
gi|12322452|gb|AAG51247.1|AC055769_67.5e-3157.94copia-type polyprotein, putative; 28768-32772 [Arabidopsis thaliana][more]
gi|12039053|gb|AAF25964.2|AC017118_17.5e-3157.94F6N18.1 [Arabidopsis thaliana][more]
gi|158578541|gb|ABW74566.1|3.2e-2958.49integrase [Boechera divaricarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.149670.1Cucsa.149670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..72
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.149670Silver-seed gourdcarcgyB0241
Cucsa.149670Cucumber (Chinese Long) v3cgycucB227
Cucsa.149670Watermelon (97103) v2cgywmbB253
Cucsa.149670Wax gourdcgywgoB293
Cucsa.149670Cucurbita maxima (Rimu)cgycmaB0410
Cucsa.149670Cucurbita maxima (Rimu)cgycmaB0412
Cucsa.149670Cucurbita moschata (Rifu)cgycmoB0410
Cucsa.149670Cucurbita moschata (Rifu)cgycmoB0412
Cucsa.149670Wild cucumber (PI 183967)cgycpiB221
Cucsa.149670Cucumber (Chinese Long) v2cgycuB216
Cucsa.149670Melon (DHL92) v3.5.1cgymeB251
Cucsa.149670Watermelon (Charleston Gray)cgywcgB253
Cucsa.149670Cucurbita pepo (Zucchini)cgycpeB0401
Cucsa.149670Cucurbita pepo (Zucchini)cgycpeB0402
Cucsa.149670Bottle gourd (USVL1VR-Ls)cgylsiB242