Cucsa.144390 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.144390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Cytosolic endo-beta-N-acetylglucosaminidase
Location	scaffold01080 : 821484 .. 822301 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGGTCTTGTGAAGCAGTCATGGGAAATAGTGCGAAGTTACCCAAAACTTATACCATTCCACTCAAATTTTGATCAGGTTAGAACTCGCCAATCACGTGTTCCTTAAACAATTGCTTGAGGAGTCTAATACTTTTTAAATTTCTCTAGTATAGTGTGTGGAAGTGGAATTACATTGGTCTAAAGGTTAAATGCGTTGGTAGTGGATATAAGTCCATTATCATGCTTTCATTTTCAAACTCTAATTTAAAAGAACAAATCCTAATAAATACATCTCAGATTCTTCATGGATAATTTCTTTGGTATCTCCAAAACACAACTAATATATGTTTTATTTATTTAAATAACATACGAGCATCGGGAATGGTTTGGCATACCACATAGTTGCGTTGTTGACATCCAAGTAATCCACCTACTTTCTAATTTGGTATTAAGTAGATTTTATATTGTTTCAGAGGTCTAAGATACCTGGTGAAAGAAATTGTTGAGTGTCTTATTGCTTATATCAACTTCATTGGCATCTTGTCGAAATGTTATTAATTTGAAAGCTACAAATAATCTCTTGCCTAAAGTTAGTCTCTTATTAATAGCTAGGTGACAAATATTACTACTCAATCAAAGTCTCTCTCTTTCCACGTTTCCAGGGTCATGGTTATCATGTTTTCATAGATGGAGTAAAAATATCAGATGCGTCTTGGAACAACTTGTCCCGTCAAAGCTTTCAGGTAAGGAATATATCTCTAGTAATTAGGATATTGAAAGGTGTGCGTCTCTCCGATCCTATTCTTCGATCCTATTCTGTGTACATTAAATAA

mRNA sequence

ATGGTGGGGTCTTGTGAAGCAGTCATGGGAAATAGTGCGAAGTTACCCAAAACTTATACCATTCCACTCAAATTTTGATCAGGGTCATGGTTATCATGTTTTCATAGATGGAGTAAAAATATCAGATGCGTCTTGGAACAACTTGTCCCGTCAAAGCTTTCAGGTAAGGAATATATCTCTAGTAATTAGGATATTGAAAGGTGTGCGTCTCTCCGATCCTATTCTTCGATCCTATTCTGTGTACATTAAATAA

Coding sequence (CDS)

ATGGTGGGGTCTTGTGAAGCAGTCATGGGAAATAGTGCGAAGTTACCCAAAACTTATACCATTCCACTCAAATTTTGATCAGGGTCATGGTTATCATGTTTTCATAGATGGAGTAAAAATATCAGATGCGTCTTGGAACAACTTGTCCCGTCAAAGCTTTCAGGTAAGGAATATATCTCTAGTAATTAGGATATTGAAAGGTGTGCGTCTCTCCGATCCTATTCTTCGATCCTATTCTGTGTACATTAAATAA

Protein sequence

WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQVRNISLVIRILKGVRLSDPILRSYSVYIK*

Homology

[Close]

BLAST of Cucsa.144390 vs. Swiss-Prot
Match: ENAS2_ARATH (Cytosolic endo-beta-N-acetylglucosaminidase 2 OS=Arabidopsis thaliana GN=ENGASE2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-13
Identity = 29/54 (53.70%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LV++SW IV++YP+++PF+S+F+QG GYHV ++G ++SD+ W N+S QS Q
Sbjct: 326 WWSLVEKSWGIVQTYPQVLPFYSDFNQGFGYHVSLEGRQLSDSPWYNISCQSLQ 379

[Close]

BLAST of Cucsa.144390 vs. Swiss-Prot
Match: ENAS1_ARATH (Cytosolic endo-beta-N-acetylglucosaminidase 1 OS=Arabidopsis thaliana GN=ENGASE1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LV++SW IV++YP+++PF+S+F+QG G H  + G K+S+A W N+S QS Q
Sbjct: 321 WWSLVEKSWGIVQTYPQVLPFYSDFNQGLGSHTSLGGRKLSEAPWYNISCQSLQ 374

[Close]

BLAST of Cucsa.144390 vs. TrEMBL
Match: A0A0D9WFE0_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.8e-16
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQV 56
           WWGLV++SW +++SYPK +PF+SNFDQGHGY V I+GVK+S A WNN+S QSFQ+
Sbjct: 352 WWGLVEESWGVLQSYPKQLPFYSNFDQGHGYQVSIEGVKVSGAPWNNISCQSFQL 406

[Close]

BLAST of Cucsa.144390 vs. TrEMBL
Match: A0A166BZM8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011846 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLV+ SW + + YPK +PF+SNFDQGHGYH+F+DG KIS   WNN+S QSFQ
Sbjct: 360 WWGLVENSWGVSQKYPKSLPFYSNFDQGHGYHIFMDGRKISTKPWNNISCQSFQ 413

[Close]

BLAST of Cucsa.144390 vs. TrEMBL
Match: A0A022Q0N3_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002327mg PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-15
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLV++SW IV++YPK +PF+S+FDQGHG+H++ +G ++S  SWNNLS QSFQ
Sbjct: 331 WWGLVEKSWGIVQNYPKALPFYSDFDQGHGFHIYSNGNQVSQTSWNNLSSQSFQ 384

[Close]

BLAST of Cucsa.144390 vs. TrEMBL
Match: J3M649_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.2e-15
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLV++SW +++SYPK +PF+S+FDQGHGY V I+G+K+S A WNN+S Q+FQ
Sbjct: 177 WWGLVEESWGVLQSYPKQLPFYSDFDQGHGYQVSIEGLKVSSAPWNNISCQNFQ 230

[Close]

BLAST of Cucsa.144390 vs. TrEMBL
Match: A0A0A9J530_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.9e-15
Identity = 33/54 (61.11%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLV++SW+I+R YPK +PF+S+FDQGHGY V ++G+++S  SWNN+S Q+FQ
Sbjct: 56  WWGLVEKSWDILRKYPKQLPFYSDFDQGHGYQVSVEGLQVSSDSWNNISCQNFQ 109

[Close]

BLAST of Cucsa.144390 vs. TAIR10
Match: AT3G11040.1 (AT3G11040.1 Glycosyl hydrolase family 85 )

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-14
Identity = 29/54 (53.70%), Postives = 45/54 (83.33%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LV++SW IV++YP+++PF+S+F+QG GYHV ++G ++SD+ W N+S QS Q
Sbjct: 326 WWSLVEKSWGIVQTYPQVLPFYSDFNQGFGYHVSLEGRQLSDSPWYNISCQSLQ 379

[Close]

BLAST of Cucsa.144390 vs. TAIR10
Match: AT5G05460.1 (AT5G05460.1 Glycosyl hydrolase family 85 )

HSP 1 Score: 70.1 bits (170), Expect = 7.4e-13
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LV++SW IV++YP+++PF+S+F+QG G H  + G K+S+A W N+S QS Q
Sbjct: 321 WWSLVEKSWGIVQTYPQVLPFYSDFNQGLGSHTSLGGRKLSEAPWYNISCQSLQ 374

[Close]

BLAST of Cucsa.144390 vs. NCBI nr
Match: gi|778701380|ref|XP_004148186.2| (PREDICTED: LOW QUALITY PROTEIN: cytosolic endo-beta-N-acetylglucosaminidase [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLVKQS EIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ
Sbjct: 325 WWGLVKQSXEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 378

[Close]

BLAST of Cucsa.144390 vs. NCBI nr
Match: gi|659109703|ref|XP_008454832.1| (PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-23
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WWGLVKQSWEIVRSYPKLIPF+SNFDQGHGYHVF+DGVKISDASWNNLS QSFQ
Sbjct: 398 WWGLVKQSWEIVRSYPKLIPFYSNFDQGHGYHVFMDGVKISDASWNNLSCQSFQ 451

[Close]

BLAST of Cucsa.144390 vs. NCBI nr
Match: gi|778701373|ref|XP_011655011.1| (PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like isoform X1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LVK+SW +V+SYPKL+PF+SNFDQGHG+HV IDG +ISDASWNNLS Q FQ
Sbjct: 321 WWNLVKKSWGLVQSYPKLLPFYSNFDQGHGHHVSIDGEQISDASWNNLSSQGFQ 374

[Close]

BLAST of Cucsa.144390 vs. NCBI nr
Match: gi|778701376|ref|XP_004148185.2| (PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like isoform X2 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 9.4e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LVK+SW +V+SYPKL+PF+SNFDQGHG+HV IDG +ISDASWNNLS Q FQ
Sbjct: 321 WWNLVKKSWGLVQSYPKLLPFYSNFDQGHGHHVSIDGEQISDASWNNLSSQGFQ 374

[Close]

BLAST of Cucsa.144390 vs. NCBI nr
Match: gi|659109697|ref|XP_008454829.1| (PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Cucumis melo])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-17
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 1   WWGLVKQSWEIVRSYPKLIPFHSNFDQGHGYHVFIDGVKISDASWNNLSRQSFQ 55
           WW LVK+SW +V+SYPKL+PF+SNFDQGHG+HV +DG +ISDASWNNLS Q FQ
Sbjct: 334 WWNLVKKSWGLVQSYPKLLPFYSNFDQGHGHHVSVDGEQISDASWNNLSSQGFQ 387

The following BLAST results are available for this feature:

BLAST of Cucsa.144390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ENAS2_ARATH	2.4e-13	53.70	Cytosolic endo-beta-N-acetylglucosaminidase 2 OS=Arabidopsis thaliana GN=ENGASE2...	[more]
ENAS1_ARATH	1.3e-11	51.85	Cytosolic endo-beta-N-acetylglucosaminidase 1 OS=Arabidopsis thaliana GN=ENGASE1...	[more]

BLAST of Cucsa.144390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D9WFE0_9ORYZ	2.8e-16	67.27	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]
A0A166BZM8_DAUCA	1.0e-15	66.67	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_011846 PE=4 SV=1	[more]
A0A022Q0N3_ERYGU	3.0e-15	62.96	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002327mg PE=4 SV=1	[more]
J3M649_ORYBR	5.2e-15	62.96	Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1	[more]
A0A0A9J530_ARUDO	8.9e-15	61.11	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of Cucsa.144390 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11040.1	1.4e-14	53.70	Glycosyl hydrolase family 85	[more]
AT5G05460.1	7.4e-13	51.85	Glycosyl hydrolase family 85	[more]

BLAST of Cucsa.144390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701380\|ref\|XP_004148186.2\|	8.8e-24	98.15	PREDICTED: LOW QUALITY PROTEIN: cytosolic endo-beta-N-acetylglucosaminidase [Cuc...	[more]
gi\|659109703\|ref\|XP_008454832.1\|	3.3e-23	94.44	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Cucumis melo]	[more]
gi\|778701373\|ref\|XP_011655011.1\|	9.4e-18	75.93	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like isoform X1 [Cucumis ...	[more]
gi\|778701376\|ref\|XP_004148185.2\|	9.4e-18	75.93	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like isoform X2 [Cucumis ...	[more]
gi\|659109697\|ref\|XP_008454829.1\|	1.2e-17	74.07	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0033925	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.144390.1	Cucsa.144390.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.144390	Lsi04G010640	Bottle gourd (USVL1VR-Ls)	cgylsiB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.144390	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.144390	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.144390	Melon (DHL92) v3.6.1	cgymedB237
Cucsa.144390	Silver-seed gourd	carcgyB0745
Cucsa.144390	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.144390	Watermelon (97103) v2	cgywmbB244
Cucsa.144390	Wax gourd	cgywgoB283
Cucsa.144390	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.144390	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.144390	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.144390	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.144390	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.144390	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.144390	Melon (DHL92) v3.5.1	cgymeB242
Cucsa.144390	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.144390	Watermelon (97103) v1	cgywmB253