Cucsa.144280 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.144280
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Mitochondrial ribosomal protein L37
Location	scaffold01080 : 672893 .. 673668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGGCTGGTAAAGAAATTATTTATCTGCCACTTTCTATAGATTGGAGTAACTAGTAAGTTTAGTTTTATAATTTTTGGCCTTTCTTTGTCTCTGTTATACTTGGAGAAAGAGTTGTTCTGGCACATCAGCACATGTTTTCAAGAAGTTCAGACATCGCATTGCATTTTGTTTGTTTTTTtCTATTTGAAACCATATCTGGAAGTTTATGTGTTTTGTAAGATATACAATCCCTAAGGTACACATGGCCTTTGAGGTGTTACTGTTGTATCAAGCTGTTGGATTCTTATCATAGCTGATTCAAAGAAACACTGACTACCATAGTTGTTGAAGTAGTTCATCAGAACTAATGAATTTGTTCGTTTTTGTGTTGCAGAGAATAAAAATATGGGTTTGAACCAAGTTAGTCTGTTTAGAAGGAGCATTATTGTTAATAGCAAAGACCCAATACAACTGACATCTGTCCAAACGAGGCAAATCAAAGAAGGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

mRNA sequence

ATGGACATGGCTGGCAAATCAAAGAAGGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

Coding sequence (CDS)

ATGGACATGGCTGGCAAATCAAAGAAGGGGTCTAAAGGGGGAGCAGCTGTTGATGCTCCTGAAGCATCGATTCTAAGTAAAGAGGTGAGGTCTACTACTGTAGTTGGTGCCAATATTCTCAAAGAAGGCGCAGATCCAAAAGGTATGGCAGACTTAGAGTACTCTGTTTGGCTTGATAAACATCCACCTCTAAGCAAATTGCGAAGGAAGAATATCCAAACCCTTTCCTATGCAGATCTCAAACGCTTTGTTAAATTAGATACTCGAGCAAGAATAGGAAAACAACTCTATCAGGACCAAGAACTGATGTAA

Protein sequence

MDMAGKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVWLDKHPPLSKLRRKNIQTLSYADLKRFVKLDTRARIGKQLYQDQELM*

Homology

[Close]

BLAST of Cucsa.144280 vs. TrEMBL
Match: A0A0A0KYS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GKSKKGSKGGAA DAP+ASILSKEV+STTVVGANILKEGADPK MAD EY  W    L+K
Sbjct: 31  GKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK 90

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           HPPLS+LRRKN ++L YADLKRF+KLDTRARI
Sbjct: 91  HPPLSELRRKNAESLPYADLKRFIKLDTRARI 122

[Close]

BLAST of Cucsa.144280 vs. TrEMBL
Match: C6SYP3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-28
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+AS LSKEV+S+TVVGANILKEG DPK   D EY  W    LDK
Sbjct: 30  GKAKKGSKGGAAADAPKASTLSKEVKSSTVVGANILKEGTDPKIQPDSEYPDWLWHLLDK 89

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            P LS+LRR+NI TLSY DLKRFVKLDTRARI
Sbjct: 90  RPALSELRRRNIDTLSYEDLKRFVKLDTRARI 121

[Close]

BLAST of Cucsa.144280 vs. TrEMBL
Match: A0A0B2RJC8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-28
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+AS LSKEV+S+TVVGANILKEG DPK   D EY  W    LDK
Sbjct: 30  GKAKKGSKGGAAADAPKASTLSKEVKSSTVVGANILKEGTDPKIQPDSEYPDWLWHLLDK 89

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            P LS+LRR+NI TLSY DLKRFVKLDTRARI
Sbjct: 90  RPALSELRRRNIDTLSYEDLKRFVKLDTRARI 121

[Close]

BLAST of Cucsa.144280 vs. TrEMBL
Match: C6T5W2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G073700 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+AS LSKEV+S+TVVGA+ILKEG DPK   D EY  W    LDK
Sbjct: 30  GKAKKGSKGGAAADAPKASTLSKEVKSSTVVGASILKEGTDPKIQPDSEYPDWLWHLLDK 89

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            P LS+LRR+NI TLSY DLKRFVKLDTRARI
Sbjct: 90  CPALSELRRRNIDTLSYEDLKRFVKLDTRARI 121

[Close]

BLAST of Cucsa.144280 vs. TrEMBL
Match: A0A0B2S3N2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_049925 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+AS LSKEV+S+TVVGA+ILKEG DPK   D EY  W    LDK
Sbjct: 30  GKAKKGSKGGAAADAPKASTLSKEVKSSTVVGASILKEGTDPKIQPDSEYPDWLWHLLDK 89

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            P LS+LRR+NI TLSY DLKRFVKLDTRARI
Sbjct: 90  CPALSELRRRNIDTLSYEDLKRFVKLDTRARI 121

[Close]

BLAST of Cucsa.144280 vs. TAIR10
Match: AT3G01740.1 (AT3G01740.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 117.9 bits (294), Expect = 3.8e-27
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 1


Query: 4   AGKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LD 63
           A K+KKG KGG A DAP+ S L+KE++STTVVGAN LK+G+DPK + D +Y  W    LD
Sbjct: 24  ASKAKKGGKGGGASDAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWLWHLLD 83

Query: 64  KHPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           K P LS+LRRKN++TL Y DLKRFVKLDTR +I
Sbjct: 84  KRPALSELRRKNVETLPYDDLKRFVKLDTRGKI 116

[Close]

BLAST of Cucsa.144280 vs. TAIR10
Match: AT5G14290.1 (AT5G14290.1 Mitochondrial ribosomal protein L37)

HSP 1 Score: 102.8 bits (255), Expect = 1.3e-22
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 1


Query: 4   AGKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYS--VW--LD 63
           AGK+KK  +G    DAP+AS LSKE++S+ VV AN LK+G DPK + + ++   +W  LD
Sbjct: 30  AGKAKKVGRGDGGNDAPKASNLSKEIKSSMVVSANTLKDGLDPKILPNSDHPDYLWHLLD 89

Query: 64  KHPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           K P LS+LRRKN++TLS+ DLKRFVKLDTRARI
Sbjct: 90  KRPALSELRRKNVETLSFDDLKRFVKLDTRARI 122

[Close]

BLAST of Cucsa.144280 vs. NCBI nr
Match: gi|659083110|ref|XP_008442187.1| (PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-32
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GKSKKGSKGGAA DAP+ASILSKEV+STTVVGANILKEGADPK MAD EY  W    LDK
Sbjct: 33  GKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDK 92

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           HPPLS+LRRKN ++L YADL+RFVKLDTRARI
Sbjct: 93  HPPLSELRRKNAESLPYADLRRFVKLDTRARI 124

[Close]

BLAST of Cucsa.144280 vs. NCBI nr
Match: gi|659083108|ref|XP_008442186.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-32
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GKSKKGSKGGAA DAP+ASILSKEV+STTVVGANILKEGADPK MAD EY  W    LDK
Sbjct: 60  GKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWHLLDK 119

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           HPPLS+LRRKN ++L YADL+RFVKLDTRARI
Sbjct: 120 HPPLSELRRKNAESLPYADLRRFVKLDTRARI 151

[Close]

BLAST of Cucsa.144280 vs. NCBI nr
Match: gi|778695065|ref|XP_004144674.2| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 74/92 (80.43%), Postives = 81/92 (88.04%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GKSKKGSKGGAA DAP+ASILSKEV+STTVVGANILKEGADPK MAD EY  W    L+K
Sbjct: 31  GKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPAWLWNLLNK 90

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
           HPPLS+LRRKN ++L YADLKRF+KLDTRARI
Sbjct: 91  HPPLSELRRKNAESLPYADLKRFIKLDTRARI 122

[Close]

BLAST of Cucsa.144280 vs. NCBI nr
Match: gi|1009117870|ref|XP_015875550.1| (PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 138.7 bits (348), Expect = 6.0e-30
Identity = 73/92 (79.35%), Postives = 79/92 (85.87%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+ASILSKEV+STTVVGANILKEGADPK +AD EY  W    LDK
Sbjct: 32  GKAKKGSKGGAAGDAPKASILSKEVKSTTVVGANILKEGADPKILADSEYPDWLGHLLDK 91

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            PPLS+LRRKNI+TL Y DLKRFVKLD RARI
Sbjct: 92  RPPLSELRRKNIETLPYEDLKRFVKLDNRARI 123

[Close]

BLAST of Cucsa.144280 vs. NCBI nr
Match: gi|351726465|ref|NP_001238663.1| (uncharacterized protein LOC100499962 [Glycine max])

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 5   GKSKKGSKGGAAVDAPEASILSKEVRSTTVVGANILKEGADPKGMADLEYSVW----LDK 64
           GK+KKGSKGGAA DAP+AS LSKEV+S+TVVGANILKEG DPK   D EY  W    LDK
Sbjct: 30  GKAKKGSKGGAAADAPKASTLSKEVKSSTVVGANILKEGTDPKIQPDSEYPDWLWHLLDK 89

Query: 65  HPPLSKLRRKNIQTLSYADLKRFVKLDTRARI 93
            P LS+LRR+NI TLSY DLKRFVKLDTRARI
Sbjct: 90  RPALSELRRRNIDTLSYEDLKRFVKLDTRARI 121

The following BLAST results are available for this feature:

BLAST of Cucsa.144280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYS4_CUCSA	7.6e-32	80.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G539610 PE=4 SV=1	[more]
C6SYP3_SOYBN	8.7e-28	75.00	Uncharacterized protein OS=Glycine max GN=GLYMA_19G077100 PE=2 SV=1	[more]
A0A0B2RJC8_GLYSO	8.7e-28	75.00	Uncharacterized protein OS=Glycine soja GN=glysoja_044758 PE=4 SV=1	[more]
C6T5W2_SOYBN	7.3e-27	73.91	Uncharacterized protein OS=Glycine max GN=GLYMA_05G073700 PE=2 SV=1	[more]
A0A0B2S3N2_GLYSO	7.3e-27	73.91	Uncharacterized protein OS=Glycine soja GN=glysoja_049925 PE=4 SV=1	[more]

BLAST of Cucsa.144280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01740.1	3.8e-27	63.44	Mitochondrial ribosomal protein L37	[more]
AT5G14290.1	1.3e-22	59.14	Mitochondrial ribosomal protein L37	[more]

BLAST of Cucsa.144280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083110\|ref\|XP_008442187.1\|	4.9e-32	81.52	PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]	[more]
gi\|659083108\|ref\|XP_008442186.1\|	4.9e-32	81.52	PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]	[more]
gi\|778695065\|ref\|XP_004144674.2\|	1.1e-31	80.43	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Cucumis sativus]	[more]
gi\|1009117870\|ref\|XP_015875550.1\|	6.0e-30	79.35	PREDICTED: 39S ribosomal protein L54, mitochondrial-like [Ziziphus jujuba]	[more]
gi\|351726465\|ref\|NP_001238663.1\|	1.2e-27	75.00	uncharacterized protein LOC100499962 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.144280.1	Cucsa.144280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR28595	FAMILY NOT NAMED	coord: 4..92 score: 5.4
None	No IPR available	PANTHER	PTHR28595:SF1	39S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL	coord: 4..92 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.144280	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.144280	Cucumber (Chinese Long) v3	cgycucB218
Cucsa.144280	Watermelon (97103) v2	cgywmbB243
Cucsa.144280	Watermelon (97103) v2	cgywmbB244
Cucsa.144280	Wax gourd	cgywgoB283
Cucsa.144280	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.144280	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.144280	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.144280	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.144280	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.144280	Wild cucumber (PI 183967)	cgycpiB213
Cucsa.144280	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.144280	Watermelon (Charleston Gray)	cgywcgB243
Cucsa.144280	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.144280	Watermelon (97103) v1	cgywmB253
Cucsa.144280	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.144280	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.144280	Bottle gourd (USVL1VR-Ls)	cgylsiB231
Cucsa.144280	Bottle gourd (USVL1VR-Ls)	cgylsiB232
Cucsa.144280	Melon (DHL92) v3.6.1	cgymedB238
Cucsa.144280	Silver-seed gourd	carcgyB0745
Cucsa.144280	Silver-seed gourd	carcgyB1028