Cucsa.144060 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.144060
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCAI-1 autoinducer sensor kinase/phosphatase cqsS isoform 1
Locationscaffold01080 : 459038 .. 460947 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGATGATTGCAATGTTCTTGCATATCTTGCCACACGATGTGAAGAATAGAGTCATCCAACATGACTTTGTGCGCTCGGGAGAGACTGTTTCACATCACTTCAACCTTGTGTTGTTGGCTGTGTTATGATTACACGATGAGTTGTTGAAGAAACCACAAGTAGTAACAAACACATGCACCGATGCACGATGGAGGTGTTTCGAGGTCTGCATATTCTTTTACTTCCTAATTTATGACTCACAAAGTCCAGCTACTTGAATGCGCTATGTTTGAATTTGCAGAACTGCCTAGGGGCATTGAATGGGACATACATTAAGGTCAACATGTCATAAAATGATAGACCTAAGTATAGAACACGTAAGGGGGAAGTAGCCACAAACATCCTCGATGTATGTGACACGAAAGGAGACTTCGTGTTCGTTTTAGTTGGCTGGAAAGGGTCTGCAGCTGATTCACGAATTCTTCAAAATGCTATTGCACAACCAAACGATCTGCAGGTTCCAAAGGGTAATTGAAAGTGGTACAGTTCAACCAACGAATATGTAAATAAACTGATTTAGACCTGACGCATTCGTAACAAGTTACTACTATCTATGCGACGCGGGGTACCCAATGTAGAGGGATTTTTGGCTCTGTACATAGGACAACGATACCACTTGCAAGAGTGGCGTGGAGCGGGAAATGCACCTACCACTACGAAGAGTACTTTAACTTGAAACATTCCTCCGCTTGTAATATTATTGAACGAGCGTTCGTTCTGTTGAAGGGTCGATGGGCAATACTTCGCGGTAAGTCATATTATCTCGTACAAGCTCAGTGTCGAACCATTATGGCATGTTGCCTACTACACAATCTCATCAACCGCGAGATGACGAATGTCAATTTCATTGAAGACGTGGATGAGGGAGACTCAACCTACGCGACTATCGAAGGTGATGACATTCAATTTCATTGAGAACTCGAACGAATGGACGCATTGATGGGATGATTTGGTCGTCGAGATGTTCAATCAATGGCAGTTGAGTAATCAATAGACTATGTGTGTCGATTTAGTATTCATGTATTCGTTTTAACTTAGTATTGGGTGTGTCTTCCTTTATAGTTTAATGTTTGCATGCATGAACAACATGAATGAAACAGTCTCCCTTCACGCAATAGACGCTATTAAATGGCCTTTTTTATTTTGTCCATCTATATAGTGAAATTACTGATTTCTATGCCGTCATTTCAATTGTCAGTATGGCAAGTTCGTCACATGCACCTAAGCATGTATGGACGAAGGAGGAGGAGGAGGCAACCCTCGTGGACTGTATAGTGGAATTGGTGTCTGCTGGTGGTTAGAAGTCAAACAATGGCACTTTTTGACCGGGGTATCTGGCACAGCTTCTTCTAATGATGGCGGTGAATTTTTTGGGATGCAATGTCCAGGCGACTACAGTTATTGACGGTTGCATAAAATTGTTGAAGCAATCATATCAAAAAATTGTAGAAATGCACGGCCCGTTCTGTAGCGGGTTCAGTTGGAATGACGATGTGAAGTGCATCATTGCTGAGAAGGAATTGATTGACAAATGGGTTAGGGTATGTGGAAAGTAAAATTGTACATTGATATAATTTTTACTTCAATATGAAACAAGTCTAATATTTGATTTTTTTTTCCTATGTAGAGTCATCATGCAGCCAAGGGCCTGCTGAATAAATCATCCACATATTACGACGAGTTTTCGTATGTATTTGGGAAAGATAGGGCAACAGAAGCCCGTGCGGAGACATTTGCTGACATCAGATCGAACATTCCTAGCGGGTTTAAGGAATTTGCTAGCGTGGATCTCAATTATATGGAAATTCCTTCTATGTCCAGCCCTGGGTTTAACATGTCCCCCAACAATATCGCACGACCTAGTCAATGA

mRNA sequence

gagatgattgcaatgttcttgcatatcttgccacacgatgtgaagaatagagtcatccaacatgactttgtgcgctcgggagagactgtttcacatcacttcaaccttttgttgaagaaaccacaagtagtaacaaacacatgcaccgatgcacgatggaggtgtttcgagaactgcctaggggcattgaatgggacatacattaagtatagaacacgtaagggggaagtagccacaaacatcctcgatgtatgtgacacgaaaggagacttcgtgttcgttttagttggctggaaagggtctgcagctgattcacgaattcttcaaaatgctattgcacaaccaaacgatctgcaggttccaaaggagggatttttggctctgtacataggacaacgataccacttgcaagagtggcgtggagcgggaaatgcacctaccactacgaagaaaatgcacggcccgttctgtagcgggttcagttggaatgacgatgtgaagtgcatcattgctgagaaggaattgattgacaaatgggttaggagtcatcatgcagccaagggcctgctgaataaatcatccacatattacgacgagttttcgtatgtatttgggaaagatagggcaacagaagcccgtgcggagacatttgctgacatcagatcgaacattcctagcgggtttaaggaatttgctagcgtggatctcaattatatggaaattccttctatgtccagccctgggtttaacatgtcccccaacaatatcgcacgacctagtcaatga

Coding sequence (CDS)

GAGATGATTGCAATGTTCTTGCATATCTTGCCACACGATGTGAAGAATAGAGTCATCCAACATGACTTTGTGCGCTCGGGAGAGACTGTTTCACATCACTTCAACCTTTTGTTGAAGAAACCACAAGTAGTAACAAACACATGCACCGATGCACGATGGAGGTGTTTCGAGAACTGCCTAGGGGCATTGAATGGGACATACATTAAGTATAGAACACGTAAGGGGGAAGTAGCCACAAACATCCTCGATGTATGTGACACGAAAGGAGACTTCGTGTTCGTTTTAGTTGGCTGGAAAGGGTCTGCAGCTGATTCACGAATTCTTCAAAATGCTATTGCACAACCAAACGATCTGCAGGTTCCAAAGGAGGGATTTTTGGCTCTGTACATAGGACAACGATACCACTTGCAAGAGTGGCGTGGAGCGGGAAATGCACCTACCACTACGAAGAAAATGCACGGCCCGTTCTGTAGCGGGTTCAGTTGGAATGACGATGTGAAGTGCATCATTGCTGAGAAGGAATTGATTGACAAATGGGTTAGGAGTCATCATGCAGCCAAGGGCCTGCTGAATAAATCATCCACATATTACGACGAGTTTTCGTATGTATTTGGGAAAGATAGGGCAACAGAAGCCCGTGCGGAGACATTTGCTGACATCAGATCGAACATTCCTAGCGGGTTTAAGGAATTTGCTAGCGTGGATCTCAATTATATGGAAATTCCTTCTATGTCCAGCCCTGGGTTTAACATGTCCCCCAACAATATCGCACGACCTAGTCAATGA

Protein sequence

EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNLLLKKPQVVTNTCTDARWRCFENCLGALNGTYIKYRTRKGEVATNILDVCDTKGDFVFVLVGWKGSAADSRILQNAIAQPNDLQVPKEGFLALYIGQRYHLQEWRGAGNAPTTTKKMHGPFCSGFSWNDDVKCIIAEKELIDKWVRSHHAAKGLLNKSSTYYDEFSYVFGKDRATEARAETFADIRSNIPSGFKEFASVDLNYMEIPSMSSPGFNMSPNNIARPSQ*
Homology
[Close]
BLAST of Cucsa.144060 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 5.0e-56
Identity = 115/185 (62.16%), Postives = 133/185 (71.89%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLH+L HDVKNRVIQ +FVRSGETVS HFN+           L+K+P  VT+ C 
Sbjct: 43  EMVAMFLHVLAHDVKNRVIQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCN 102

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RW+CFENCLGAL+GTYIK          +RTRKGE+ATN+L VCD KGDFV+VL GW+
Sbjct: 103 DQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWE 162

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++AI+Q N LQVPK             EGFLA Y GQRYHLQEWRGA NAP
Sbjct: 163 GSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAP 222

[Close]
BLAST of Cucsa.144060 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.8e-22
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 151 KMHGPFCSGFSWNDDVKCIIAEKELIDKWVRSHHAAKGLLNKSSTYYDEFSYVFGKDRAT 210
           +M GP CSGF WND+ KCI+AEKEL D WVRS  AAKGLLN    YYDE +YVFG+DRAT
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRAT 459

Query: 211 EARAETFADIRSNIPSGFKEFASVDLNYMEIPSMSSPGFNMSPNNI--ARPSQ 262
              AETFAD+ SN P G  +   +     + P + S G ++  +++  +RPS+
Sbjct: 460 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSR 512


HSP 2 Score: 225.3 bits (573), Expect = 8.5e-56
Identity = 116/185 (62.70%), Postives = 136/185 (73.51%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLHIL HDVK+RVI+ +F+RSGET+S HFN+           LLKKPQ V N CT
Sbjct: 71  EMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECT 130

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RWR FENCLGAL+GTYIK          YRTRKGEVATN+L VCDTKGDFV+VL GW+
Sbjct: 131 DQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWE 190

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++A+++PN L+VPK             EGFLA Y GQRYHLQEWRG  NAP
Sbjct: 191 GSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAP 250

[Close]
BLAST of Cucsa.144060 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 1 

Query: 151 KMHGPFCSGFSWNDDVKCIIAEKELIDKWVRSHHAAKGLLNKSSTYYDEFSYVFGKDRAT 210
           +M GP CSGF WND+ KCI+AEKE+ D W  SH AAKGLLNKS  +YDE SYVFGKDRAT
Sbjct: 437 EMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRAT 496

Query: 211 EARAETFADIRSNIPSGFKEFASVDLNYMEIPSMSSPGFNMSPNNI 257
             RAE+FADI SN P G+   A+  +   + P M SPG NMSP+++
Sbjct: 497 GGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 540


HSP 2 Score: 173.3 bits (438), Expect = 3.8e-40
Identity = 92/182 (50.55%), Postives = 118/182 (64.84%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFN-----------LLLKKPQVVTNTCT 60
           EM+A+FLHIL H VKNRVI+  F+RSGET+S HFN           +LLKKP+ V+   T
Sbjct: 102 EMVALFLHILAHHVKNRVIKFRFLRSGETISRHFNAVLNAVIRLQGVLLKKPEPVSENST 161

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RW+ F+NCLGAL+GTYIK          YRTRK E+ATN+L VC     F++VL GW+
Sbjct: 162 DERWKWFKNCLGALDGTYIKVNVREGDKPRYRTRKNEIATNVLGVCSQDMQFIYVLPGWE 221

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 149
           GS +DSR+L++A+++ N L VP              +GFLA Y GQRYHL +WR  G+ P
Sbjct: 222 GSTSDSRVLRDAVSRRNGLTVPHGYYYLVDVGYTNGKGFLAPYRGQRYHLNDWR-EGHMP 281

[Close]
BLAST of Cucsa.144060 vs. TrEMBL
Match: A0A061FY73_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_014176 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.7e-35
Identity = 85/182 (46.70%), Postives = 113/182 (62.09%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNLLL-----------KKPQVVTNTCT 60
           E +A+FLHI+ H VKNRVI  +F RSGE++S HF+ +L           +KP+ +    T
Sbjct: 109 EQVAIFLHIIAHHVKNRVISLNFRRSGESISRHFHNVLAAVLKLQEHLFRKPEPIPTNST 168

Query: 61  DARWRCFENCLGALNGTYI----------KYRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D +W+ F+NCLGAL+GTYI          +YRTRKG +ATN+L VC     FVFVL GW+
Sbjct: 169 DNQWKWFKNCLGALDGTYIRVKVPSADKPRYRTRKGNIATNMLGVCTPDMQFVFVLPGWE 228

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 149
           GS AD R+L++A+ + N L+VP              EGFLA Y GQRYHL EWR  G+ P
Sbjct: 229 GSVADGRVLRDALRRRNGLKVPNGCYYLVDAGYTNCEGFLAPYRGQRYHLNEWR-QGHDP 288

[Close]
BLAST of Cucsa.144060 vs. TrEMBL
Match: A0A061GDT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 4.8e-35
Identity = 82/174 (47.13%), Postives = 108/174 (62.07%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFN-----------LLLKKPQVVTNTCT 60
           E +A+FLHI+ H VKNRVI  +F +SGE++S HF+            L +KP+ +    T
Sbjct: 109 EQVAIFLHIIAHHVKNRVISLNFRKSGESISRHFHNVLAAVLKLQEYLFRKPEPIPTNST 168

Query: 61  DARWRCFENCLGALNGTYI----------KYRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RW+ F+NCLGAL+GTYI          +YRTRKG++ATN+L VC     FVFVL GW+
Sbjct: 169 DNRWKWFKNCLGALDGTYIRVKVPSADKPRYRTRKGDIATNMLGVCTLDMQFVFVLPGWE 228

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWR 141
           GS AD R+L++A+ + N L+VP              EGFLA + GQRYHL EWR
Sbjct: 229 GSVADGRVLRDALRRRNGLKVPNGCYYLVDAGYSNCEGFLAPFRGQRYHLNEWR 282

[Close]
BLAST of Cucsa.144060 vs. TAIR10
Match: AT5G41980.1 (AT5G41980.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-12
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 1 

Query: 3   IAMFLHILPHDVKNRVIQHDFVRSGETVSHHFN------LLLKKPQVVTNTCTDARWR-- 62
           +A+FL I+ H+++ R +Q  F  SGET+S HFN      + + K     N+ +D      
Sbjct: 78  LAIFLFIIGHNLRTRAVQELFCYSGETISRHFNNVLNAVIAISKDFFQPNSNSDTLENDD 137

Query: 63  -CFENCLGALNGTYI----------KYRTRKGEVATNILDVCDTKGDFVFVLVGWKGSAA 122
             F++C+G ++  +I           +R   G +  N+L        F +VL GW+GSA+
Sbjct: 138 PYFKDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSAS 197

[Close]
BLAST of Cucsa.144060 vs. TAIR10
Match: AT5G28950.1 (AT5G28950.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-10
Identity = 30/79 (37.97%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 56  FENCLGALNGTYI----------KYRTRKGEVATNILDVCDTKGDFVFVLVGWKGSAADS 115
           F++C+GA++ T+I           +R RKG+++ N+L  C+   +F++VL GW+GSA DS
Sbjct: 22  FKDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDS 81

Query: 116 RILQNAIAQ-PNDLQVPKE 124
           ++L +A+ +  N L VP+E
Sbjct: 82  KVLNDALTRNSNRLPVPEE 100

[Close]
BLAST of Cucsa.144060 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 48.1 bits (113), Expect = 9.4e-06
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 1 

Query: 91  FVFVLVGWKGSAADSRILQNAIAQPNDLQ---VPKEGFLALYIGQRYHLQEWRGAGNAPT 150
           F++VL GW+GSA DSR+L +A+ +   +      +  FLA + G RYHLQE+ G    P 
Sbjct: 25  FIYVLSGWEGSAHDSRVLSDALRKFYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPE 84

Query: 151 TTKKM 153
           T  ++
Sbjct: 85  TPHEL 89

[Close]
BLAST of Cucsa.144060 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 226.1 bits (575), Expect = 7.1e-56
Identity = 115/185 (62.16%), Postives = 133/185 (71.89%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLH+L HDVKNRVIQ +FVRSGETVS HFN+           L+K+P  VT+ C 
Sbjct: 43  EMVAMFLHVLAHDVKNRVIQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCN 102

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RW+CFENCLGAL+GTYIK          +RTRKGE+ATN+L VCD KGDFV+VL GW+
Sbjct: 103 DQRWKCFENCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDMKGDFVYVLAGWE 162

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++AI+Q N LQVPK             EGFLA Y GQRYHLQEWRGA NAP
Sbjct: 163 GSAADSRILRDAISQENGLQVPKGYYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAP 222

[Close]
BLAST of Cucsa.144060 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 1 

Query: 151 KMHGPFCSGFSWNDDVKCIIAEKELIDKWVRSHHAAKGLLNKSSTYYDEFSYVFGKDRAT 210
           +M GP CSGF WND+ KCI+AEKEL D WVRS  AAKGLLN    YYDE +YVFG+DRAT
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRAT 459

Query: 211 EARAETFADIRSNIPSGFKEFASVDLNYMEIPSMSSPGFNMSPNNI--ARPSQ 262
              AETFAD+ SN P G  +   +     + P + S G ++  +++  +RPS+
Sbjct: 460 GRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSR 512


HSP 2 Score: 225.7 bits (574), Expect = 9.3e-56
Identity = 117/185 (63.24%), Postives = 134/185 (72.43%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLHIL HDVKNR+IQ +FVRSGETVS HFN+           LLKKPQ VTN+CT
Sbjct: 29  EMVAMFLHILAHDVKNRMIQREFVRSGETVSRHFNIVLLAGFRLHDELLKKPQPVTNSCT 88

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RW+ FENCLGAL+GTYIK          YRTRKGEVATN+L  CDTKGDFVFVL GW+
Sbjct: 89  DPRWKWFENCLGALDGTYIKVNVSATDRPRYRTRKGEVATNVLGACDTKGDFVFVLFGWE 148

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++AI++ N L+VPK             EGFLA Y G+RYHL EWRG  NAP
Sbjct: 149 GSAADSRILRDAISRHNGLKVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAP 208

[Close]
BLAST of Cucsa.144060 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 116/185 (62.70%), Postives = 136/185 (73.51%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLHIL HDVK+RVI+ +F+RSGET+S HFN+           LLKKPQ V N CT
Sbjct: 71  EMVAMFLHILAHDVKSRVIKREFMRSGETISRHFNMVLLAVIRLHEELLKKPQPVPNECT 130

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RWR FENCLGAL+GTYIK          YRTRKGEVATN+L VCDTKGDFV+VL GW+
Sbjct: 131 DQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWE 190

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++A+++PN L+VPK             EGFLA Y GQRYHLQEWRG  NAP
Sbjct: 191 GSAADSRILRDALSRPNRLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAP 250

[Close]
BLAST of Cucsa.144060 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 1 

Query: 151 KMHGPFCSGFSWNDDVKCIIAEKELIDKWVRSHHAAKGLLNKSSTYYDEFSYVFGKDRAT 210
           +M GP CSGF WND+ KCI+AEKE+ D W  SH AAKGLLNKS  +YDE SYVFGKDRAT
Sbjct: 437 EMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRAT 496

Query: 211 EARAETFADIRSNIPSGFKEFASVDLNYMEIPSMSSPGFNMSPNNI 257
             RAE+FADI SN P G+   A+  +   + P M SPG NMSP+++
Sbjct: 497 GGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 540


HSP 2 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 116/185 (62.70%), Postives = 135/185 (72.97%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFL+IL HDVKNRVIQ +F+R GET+S HFN+           LLKKPQ V N CT
Sbjct: 29  EMVAMFLNILAHDVKNRVIQREFMRLGETISRHFNMVLLAVIRLHQELLKKPQPVPNDCT 88

Query: 61  DARWRCFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGWK 120
           D RWR FENCLGAL+GTYIK          YRTRKGEVATN+L VCDTKGDF++VL GW+
Sbjct: 89  DQRWRWFENCLGALDGTYIKVNVPVSDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWE 148

Query: 121 GSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNAP 152
           GSAADSRIL++A+++PN L+VPK             EGFLA Y GQRYHLQEWRG  NAP
Sbjct: 149 GSAADSRILRDALSRPNGLKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAP 208

[Close]
BLAST of Cucsa.144060 vs. NCBI nr
Match: gi|659114872|ref|XP_008457266.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 9.7e-53
Identity = 114/186 (61.29%), Postives = 135/186 (72.58%), Query Frame = 1 

Query: 1   EMIAMFLHILPHDVKNRVIQHDFVRSGETVSHHFNL-----------LLKKPQVVTNTCT 60
           EM+AMFLHIL HDVKNRVIQ +F+RSGET+S HFN+           LLKKPQ V N  T
Sbjct: 10  EMVAMFLHILAHDVKNRVIQREFMRSGETMSRHFNMVLLAVIRLHEELLKKPQPVPNEYT 69

Query: 61  DARWR-CFENCLGALNGTYIK----------YRTRKGEVATNILDVCDTKGDFVFVLVGW 120
           D +W    +NCLGAL+GTYIK          YRTRKGEVATN+L VCDTKGDFV+VLVGW
Sbjct: 70  DKKWSYVLQNCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLVGW 129

Query: 121 KGSAADSRILQNAIAQPNDLQVPK-------------EGFLALYIGQRYHLQEWRGAGNA 152
           +GSAADSRIL++A+++PN+L+VPK             EGFLA Y GQRYHLQEWRG  NA
Sbjct: 130 EGSAADSRILRDALSRPNELKVPKGYYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENA 189

The following BLAST results are available for this feature:
BLAST of Cucsa.144060 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.0e-5662.16Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME2.8e-2251.33Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.2e-2760.38Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A061FY73_THECC3.7e-3546.70Uncharacterized protein OS=Theobroma cacao GN=TCM_014176 PE=4 SV=1[more]
A0A061GDT4_THECC4.8e-3547.13Uncharacterized protein OS=Theobroma cacao GN=TCM_029406 PE=4 SV=1[more]
BLAST of Cucsa.144060 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41980.11.4e-1230.94 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT5G28950.18.2e-1037.97 unknown protein[more]
AT5G35695.19.4e-0640.00 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
BLAST of Cucsa.144060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|7.1e-5662.16retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135889|gb|ADN33754.1|4.0e-2251.33retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136287|gb|ADN34114.1|1.2e-5562.70retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307136287|gb|ADN34114.1|3.1e-2760.38retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659114872|ref|XP_008457266.1|9.7e-5361.29PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.144060.1Cucsa.144060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 69..116
score: 1.
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 1..152
score: 8.5
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 1..152
score: 8.5