Cucsa.144020 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.144020
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	60S ribosomal protein L21
Location	scaffold01080 : 411579 .. 412005 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGATTAGCAAACTTTATTAGGTTAAGTCTTAGTTAATGTTTTTGTTTTTCTTATTAAACTTTGTTAGTTTGATGGATTTTGGAATATGATGAGCGAAAGTTCCATTATGATTTGGACTCTTTTTCTTATTAAACTTGTGATGTTCAGAATGGATTTTGCAGATCGGGAACAAAATTATTAAGAAAAGAATTCATGTCAGAGTCGAGCACGTGCAACCTTTTGATGCACCGAGGAATTTCACTTGAGGAAGGTGAATAATGAAGAGTTCAAGGTCGAAGCCAAGGCTAAAGGCGCAGTCATTTGCACCAAGAGGCAACTGAAAGGCCCCAAACCAAGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTAACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

mRNA sequence

ATGGCATTAAGATTAGCAAACTTTATTAGGAAGGTGAATAATGAAGAGTTCAAGGTCGAAGCCAAGGCTAAAGGCGCAGTCATTTGCACCAAGAGGCAACTGAAAGGCCCCAAACCAAGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTAACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

Coding sequence (CDS)

ATGGCATTAAGATTAGCAAACTTTATTAGGAAGGTGAATAATGAAGAGTTCAAGGTCGAAGCCAAGGCTAAAGGCGCAGTCATTTGCACCAAGAGGCAACTGAAAGGCCCCAAACCAAGGTTCATGGTTGAAGGTGCTTTAATGGAGACTGTAACTCCCATTCCATACGATGTGGTTAATGATCTCAAGGGTGGCTATTAG

Protein sequence

MALRLANFIRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY*

Homology

[Close]

BLAST of Cucsa.144020 vs. Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+E K  AKA G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.4e-17
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+  K +AKA+G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TrEMBL
Match: A0A0A0LEZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-20
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N+E K EAKAKG VICTKRQ +GPKP FMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TrEMBL
Match: W1PSX2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00178920 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-18
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKVNN+  K EAKAKG +I TKRQ KGPKP FMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVNNDRLKAEAKAKGEIISTKRQPKGPKPGFMVEGATIETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TrEMBL
Match: A0A0D2UZX0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G391900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.9e-18
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N++ K EAKAKG VI TKRQ KGPKP FMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDQLKAEAKAKGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TrEMBL
Match: A0A0B0MJE8_GOSAR (60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK+ N++ K EAKAKG VI TKRQ +GPKP FMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TrEMBL
Match: A0A0U1WT33_GOSHI (60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-17
Identity = 44/58 (75.86%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK+ N++ K EAKAKG VI TKRQ +GPKP FMVEGA++ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKIKNDQLKAEAKAKGEVISTKRQPEGPKPGFMVEGAMLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TAIR10
Match: AT1G09590.1 (AT1G09590.1 Translation protein SH3-like family protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-18
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+E K  AKA G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TAIR10
Match: AT1G09690.1 (AT1G09690.1 Translation protein SH3-like family protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-18
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+E K  AKA G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TAIR10
Match: AT1G57660.1 (AT1G57660.1 Translation protein SH3-like family protein)

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-18
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+  K +AKA+G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. TAIR10
Match: AT1G57860.1 (AT1G57860.1 Translation protein SH3-like family protein)

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-18
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RK  N+  K +AKA+G  I TKRQ KGPKP FMVEG  +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. NCBI nr
Match: gi|778684693|ref|XP_004140433.2| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N+E K EAKAKG VICTKRQ +GPKP FMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDELKAEAKAKGTVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. NCBI nr
Match: gi|659084684|ref|XP_008443016.1| (PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-19
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N+E K EAKAKG VICTKRQ +GPKP FMVEGALMETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDELKAEAKAKGVVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. NCBI nr
Match: gi|470135069|ref|XP_004303353.1| (PREDICTED: 60S ribosomal protein L21-1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-18
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N++ K EAKAKG VI TKRQ KGPKP FMVEGA+METVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDQLKAEAKAKGVVISTKRQPKGPKPGFMVEGAVMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. NCBI nr
Match: gi|586725906|ref|XP_006849557.1| (PREDICTED: 60S ribosomal protein L21-2 [Amborella trichopoda])

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKVNN+  K EAKAKG +I TKRQ KGPKP FMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVNNDRLKAEAKAKGEIISTKRQPKGPKPGFMVEGATIETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of Cucsa.144020 vs. NCBI nr
Match: gi|823217690|ref|XP_012441503.1| (PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii])

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1


Query: 9   IRKVNNEEFKVEAKAKGAVICTKRQLKGPKPRFMVEGALMETVTPIPYDVVNDLKGGY 67
           +RKV N++ K EAKAKG VI TKRQ KGPKP FMVEGA +ETVTPIPYDVVNDLKGGY
Sbjct: 107 LRKVKNDQLKAEAKAKGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of Cucsa.144020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL211_ARATH	3.7e-17	72.41	60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2	[more]
RL212_ARATH	6.4e-17	70.69	60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1	[more]

BLAST of Cucsa.144020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEZ0_CUCSA	7.3e-20	84.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G797610 PE=4 SV=1	[more]
W1PSX2_AMBTC	5.2e-18	79.31	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00024p00178920 PE=4 SV=...	[more]
A0A0D2UZX0_GOSRA	8.9e-18	79.31	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G391900 PE=4 SV=1	[more]
A0A0B0MJE8_GOSAR	1.5e-17	75.86	60S ribosomal L21-1-like protein OS=Gossypium arboreum GN=F383_17279 PE=4 SV=1	[more]
A0A0U1WT33_GOSHI	1.5e-17	75.86	60S ribosomal protein L21 OS=Gossypium hirsutum PE=2 SV=1	[more]

BLAST of Cucsa.144020 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09590.1	2.1e-18	72.41	Translation protein SH3-like family protein	[more]
AT1G09690.1	2.1e-18	72.41	Translation protein SH3-like family protein	[more]
AT1G57660.1	3.6e-18	70.69	Translation protein SH3-like family protein	[more]
AT1G57860.1	3.6e-18	70.69	Translation protein SH3-like family protein	[more]

BLAST of Cucsa.144020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684693\|ref\|XP_004140433.2\|	1.0e-19	84.48	PREDICTED: 60S ribosomal protein L21-1 [Cucumis sativus]	[more]
gi\|659084684\|ref\|XP_008443016.1\|	1.0e-19	84.48	PREDICTED: 60S ribosomal protein L21-1 [Cucumis melo]	[more]
gi\|470135069\|ref\|XP_004303353.1\|	2.6e-18	81.03	PREDICTED: 60S ribosomal protein L21-1 [Fragaria vesca subsp. vesca]	[more]
gi\|586725906\|ref\|XP_006849557.1\|	7.5e-18	79.31	PREDICTED: 60S ribosomal protein L21-2 [Amborella trichopoda]	[more]
gi\|823217690\|ref\|XP_012441503.1\|	1.3e-17	79.31	PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001147	Ribosomal_L21e

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.144020.1	Cucsa.144020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 10..60 score: 5.6
None	No IPR available	PANTHER	PTHR20981:SF6	RIBOSOMAL PROTEIN L21	coord: 10..60 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.144020	Melon (DHL92) v3.6.1	cgymedB238
Cucsa.144020	Silver-seed gourd	carcgyB0745
Cucsa.144020	Silver-seed gourd	carcgyB1028
Cucsa.144020	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.144020	Cucumber (Chinese Long) v3	cgycucB218
Cucsa.144020	Watermelon (97103) v2	cgywmbB243
Cucsa.144020	Watermelon (97103) v2	cgywmbB244
Cucsa.144020	Wax gourd	cgywgoB283
Cucsa.144020	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.144020	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.144020	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.144020	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.144020	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.144020	Wild cucumber (PI 183967)	cgycpiB213
Cucsa.144020	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.144020	Melon (DHL92) v3.5.1	cgymeB241
Cucsa.144020	Watermelon (Charleston Gray)	cgywcgB243
Cucsa.144020	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.144020	Watermelon (97103) v1	cgywmB253
Cucsa.144020	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.144020	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.144020	Bottle gourd (USVL1VR-Ls)	cgylsiB231
Cucsa.144020	Bottle gourd (USVL1VR-Ls)	cgylsiB232