Cucsa.143730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.143730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	scaffold01080 : 52615 .. 53451 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTCAATGGGTTTAAAATCAATGAGTGTGACAAATGTGTATATGCCAAAAGTAATGAGAATGACCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATAGGTAGCAATATTAACATTATTAAAGAAACCAAACAAATGTTGGCCAATAAATTTGAGATGAAAGACATAGGTGTCGCAGATGTTATTTTAGGTATCAAAATTTCTAGAACCCCACAAGGATTAGTGTTATCTCAATCACATTATGTTGATAAAATATTGAAGAAATATACAAAACATGACATTGTGATTGCAAAGACTCCAATTGATGGAAGTTTCCATTTAAGTAAAAATAATGGAGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTGATGTACAGCACAAGTTGTACACGTCCTGATATAGCGTATGCGGTAAGCAAGTTAAGTCGCTATACAAGTAATCCAGGTCATAATCATTGGAAAGCTATTTTGAGAATTTGGGGATGCTTAAAGCATACTAAAAATTATGGATTACACTATACTCGATATCCTGTTGTACTTGAAGGCTATATTGATGTCAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGATGGTGTTTTTAGGAAATCTTCCAAACAAACATGTATAACACGATCAACAATGGAATCTGAATTTATAGCTTTAAACAAGGTTGGAGAAGACGCATAATGACTTCAAAATTTTTTGGAAGATATTCCCAATTGGTCTAAACCAGTGCCTGCAATATGTATACATAGTGATAGCCAAACAGTTATTGAAAGC

mRNA sequence

ATGATGGTCAATgggtttaaaatcaatgagtgtgacaaatgtgtatatgccaaaagtaatgagaatgaccatgtcattgtgtgcttatatgttgatgatatgctaattataggtagcaatattaacattattaaagaaaccaaacaaatgttggccaataaatttgagatgaaagacataggtgtcgcagatgttattttaggtatcaaaatttctagaaccccacaaggattagtgttatctcaatcacattatgttgataaaatattgaagaaatatacaaaacatgacattgtgattgcaaagactccaattgatggaagtttccatttaagtaaaaataatggagatagtatagcacaattagaatactctcgcatcattggtagtttgatgtacagcacaagttgtacacgtcctgatatagcgtatgcggtaagcaagttaagtcgctatacaagtaatccaggtcataatcattggaaagctattttgagaatttggggatgcttaaagcatactaaaaattatggattacactatactcgatatcctgttgtacttgaaggctatattgatgtcaattggaTATCGAGCACTAAAGACTCCAAATCCACCAGTGGTtacatttttacccttggaagcgatggtgtttttaggaaatcttccaaacaaacatgtataacacgatcaacaatggaatctgaatttatagctttaaacaaggttggagaagacgcataatgacttcaaaattttttggaagatattcccaattggtctaaaccagtgcctgcaatatgtatacatagtgatagccaaacagttattgaaagc

Coding sequence (CDS)

ATGATGGTCAATGGGTTTAAAATCAATGAGTGTGACAAATGTGTATATGCCAAAAGTAATGAGAATGACCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATAGGTAGCAATATTAACATTATTAAAGAAACCAAACAAATGTTGGCCAATAAATTTGAGATGAAAGACATAGGTGTCGCAGATGTTATTTTAGGTATCAAAATTTCTAGAACCCCACAAGGATTAGTGTTATCTCAATCACATTATGTTGATAAAATATTGAAGAAATATACAAAACATGACATTGTGATTGCAAAGACTCCAATTGATGGAAGTTTCCATTTAAGTAAAAATAATGGAGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTGATGTACAGCACAAGTTGTACACGTCCTGATATAGCGTATGCGGTAAGCAAGTTAAGTCGCTATACAAGTAATCCAGGTCATAATCATTGGAAAGCTATTTTGAGAATTTGGGGATGCTTAAAGCATACTAAAAATTATGGATTACACTATACTCGATATCCTGTTGTACTTGAAGGCTATATTGATGTCAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGATGGTGTTTTTAGGAAATCTTCCAAACAAACATGTATAACACGATCAACAATGGAATCTGAATTTATAGCTTTAAACAAGGTTGGAGAAGACGCATAA

Protein sequence

MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDIGVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIAQLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLHYTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIALNKVGEDA*

Homology

[Close]

BLAST of Cucsa.143730 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.5e-42
Identity = 94/245 (38.37%), Postives = 144/245 (58.78%), Query Frame = 1


Query: 12   DKCVYAKS-NENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDIGVADVILGIK 71
            D CVY K  +EN+ +I+ LYVDDMLI+G +  +I + K  L+  F+MKD+G A  ILG+K
Sbjct: 989  DPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMK 1048

Query: 72   I--SRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKN-------NGDSIAQ 131
            I   RT + L LSQ  Y++++L+++   +     TP+ G   LSK           ++A+
Sbjct: 1049 IVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAK 1108

Query: 132  LEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLHY 191
            + YS  +GSLMY+  CTRPDIA+AV  +SR+  NPG  HW+A+  I   L+ T    L +
Sbjct: 1109 VPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF 1168

Query: 192  TRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIALN 247
                 +L+GY D +      + KS++GY+FT     +  +S  Q C+  ST E+E+IA  
Sbjct: 1169 GGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAAT 1228

[Close]

BLAST of Cucsa.143730 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-29
Identity = 80/248 (32.26%), Postives = 127/248 (51.21%), Query Frame = 1


Query: 6    FKINECDKCVYA--KSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDIGVA 65
            F  +  D+C+Y   K N N+++ V LYVDD++I   ++  +   K+ L  KF M D+   
Sbjct: 1061 FVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI 1120

Query: 66   DVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIAQLE 125
               +GI+I      + LSQS YV KIL K+   +     TP+    +    N D      
Sbjct: 1121 KHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTP 1180

Query: 126  YSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLHYTR 185
               +IG LMY   CTRPD+  AV+ LSRY+S      W+ + R+   LK T +  L + +
Sbjct: 1181 CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKK 1240

Query: 186  ---YPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSK-QTCITRSTMESEFIA 245
               +   + GY+D +W  S  D KST+GY+F +    +   ++K Q  +  S+ E+E++A
Sbjct: 1241 NLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMA 1300

Query: 246  LNKVGEDA 248
            L +   +A
Sbjct: 1301 LFEAVREA 1308

[Close]

BLAST of Cucsa.143730 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-21
Identity = 65/213 (30.52%), Postives = 112/213 (52.58%), Query Frame = 1


Query: 29  LYVDDMLIIGSNINIIKETKQMLANKFEMKDIGVADVILGIKISRTPQGLVLSQSHYVDK 88
           LYVDD+L+ GS+  ++      L++ F MKD+G     LGI+I   P GL LSQ+ Y ++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 89  ILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIAQLEYSRIIGSLMYSTSCTRPDIAYAVSK 148
           IL      D     TP+    + S +        ++  I+G+L Y T  TRPDI+YAV+ 
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNI 124

Query: 149 LSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH-YTRYPVVLEGYIDVNWISSTKDSKSTS 208
           + +    P    +  + R+   +K T  +GL+ +    + ++ + D +W   T   +ST+
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 209 GYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 241
           G+   LG + +   + +Q  ++RS+ E+E+ AL
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of Cucsa.143730 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 3.1e-92
Identity = 168/247 (68.02%), Postives = 201/247 (81.38%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ +GFKINECDKCVY K  E+ +VIVCLYVDDMLI+GS+  +I  TK ML ++F+MKD+
Sbjct: 932  MLSHGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDM 991

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            G+ADVILGIKI RT   L+LSQSHYVDKIL K+ K +  +A+TP+D + HLSKN G+S++
Sbjct: 992  GLADVILGIKIKRTSBELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVS 1051

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            Q+EYSRIIGSLMY  SCTRPDIAYAVSKLSRYTSNPG  HW+ I+R+   L+ T++YGLH
Sbjct: 1052 QVEYSRIIGSLMYLMSCTRPDIAYAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLH 1111

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            YTRYP VLEGY D NWIS+ KDSKS SGY+FTLG   V  KSSKQ  I RSTMESEFIAL
Sbjct: 1112 YTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQXVIARSTMESEFIAL 1171

Query: 241  NKVGEDA 248
            +K GE+A
Sbjct: 1172 DKCGEEA 1178

[Close]

BLAST of Cucsa.143730 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91
Identity = 167/247 (67.61%), Postives = 200/247 (80.97%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ +GFKINECDKCVY K  E+ +VIVCLYVDDMLI+GS+  +I  TK ML ++F+MKD+
Sbjct: 971  MLSHGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDM 1030

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            G+ADVILGIKI RT   L+LSQSHYVDKIL K+ K +  +A+TP+D + HLSKN G+S++
Sbjct: 1031 GLADVILGIKIKRTSNELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVS 1090

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            Q+EYSRIIGSLMY  SCTRPDIAYAV KLSRYTSNPG  HW+ I+R+   L+ T++Y LH
Sbjct: 1091 QVEYSRIIGSLMYLMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLH 1150

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            YTRYP VLEGY D NWIS+ KDSKS SGY+FTLG   V  KSSKQT I RSTMESEFIAL
Sbjct: 1151 YTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQTVIARSTMESEFIAL 1210

Query: 241  NKVGEDA 248
            +K GE+A
Sbjct: 1211 DKCGEEA 1217

[Close]

BLAST of Cucsa.143730 vs. TrEMBL
Match: A5B8E0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010942 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87
Identity = 158/245 (64.49%), Postives = 198/245 (80.82%), Query Frame = 1


Query: 1   MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
           M+ N FKINECDK VY ++ ++++VIVCLYVDDMLIIGSN ++IK TK+ML N F+MKD+
Sbjct: 595 MLSNDFKINECDKYVYTRNTQSEYVIVCLYVDDMLIIGSNNDVIKATKKMLTNYFDMKDM 654

Query: 61  GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
           GVADVILGIKI++T  GL+LSQ HY++KILK++ ++D    KTP+D + H +KNNG +I 
Sbjct: 655 GVADVILGIKIAKTSSGLILSQCHYIEKILKRFNQYDDSPIKTPVDLNLHSTKNNGPAID 714

Query: 121 QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
           QLEYSRIIGSLMY  +C   DIAYAV+KLSR+T+N G +HWK ++R+   L++T NYGLH
Sbjct: 715 QLEYSRIIGSLMYVMNCMCLDIAYAVNKLSRFTNNMGKDHWKVLVRVLRYLRYTLNYGLH 774

Query: 181 YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
           Y RYP +LEGY D NWI   KDSKSTSGYIFT+G   + RKSSKQTCI RSTMESEFIAL
Sbjct: 775 YLRYPTLLEGYSDANWIFDMKDSKSTSGYIFTIGGVAISRKSSKQTCIARSTMESEFIAL 834

Query: 241 NKVGE 246
           +K G+
Sbjct: 835 DKAGK 839

[Close]

BLAST of Cucsa.143730 vs. TrEMBL
Match: Q6L408_SOLDE (Polyprotein, putative OS=Solanum demissum GN=SDM1_44t00009 PE=4 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 6.5e-82
Identity = 150/247 (60.73%), Postives = 191/247 (77.33%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ NGFKINECDKCVY K+  N  VIV LYVDDMLI+  +I+ I  TK+ML++KF MKD+
Sbjct: 917  MLANGFKINECDKCVYIKNVLNHEVIVFLYVDDMLIMSKDIDDINATKRMLSSKFAMKDL 976

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            GVADVILGI+I +TPQGL LSQSHY++KIL K+   +  + K PID S    KN G+S +
Sbjct: 977  GVADVILGIRILKTPQGLALSQSHYIEKILDKFKYLNFNVVKIPIDLSCTFQKNVGESDS 1036

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            QLEY+R++GSLMY  +CTRPDI+ A+SKLSR+TSNP   HW A+  + G LKH+++Y LH
Sbjct: 1037 QLEYARVLGSLMYIMNCTRPDISCAISKLSRFTSNPNQTHWMAMKHVLGYLKHSQHYALH 1096

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            Y +YP ++EGY D NWI+ + + KSTSGY+FTLG   V  KSSKQTCI RSTMES+FIAL
Sbjct: 1097 YNKYPAMIEGYSDANWITGSNEVKSTSGYVFTLGRGAVSWKSSKQTCIARSTMESKFIAL 1156

Query: 241  NKVGEDA 248
            +K G++A
Sbjct: 1157 DKAGKEA 1163

[Close]

BLAST of Cucsa.143730 vs. TrEMBL
Match: A5CBN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.2e-80
Identity = 144/210 (68.57%), Postives = 177/210 (84.29%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ NGFKINECDKCVY K+ +  +VIVCLYVDDMLIIGS+ N+IK TKQML+ +F+MKD+
Sbjct: 970  MISNGFKINECDKCVYVKNTKKGYVIVCLYVDDMLIIGSDTNMIKMTKQMLSIRFDMKDL 1029

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            GVAD+ILGIK+S+T  GL+LSQ HY++KIL+K+ K+DI   KTP+D + HL KN G   +
Sbjct: 1030 GVADIILGIKVSKTSDGLILSQPHYIEKILEKFKKYDIRPKKTPMDVNLHLFKNTGIGKS 1089

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            QLEYS IIGSLMY  +CTR DIAY+VSKLSR+TSNPG NHWK+I+R+ G LK+T+NYGLH
Sbjct: 1090 QLEYSHIIGSLMYVMNCTRLDIAYSVSKLSRFTSNPGENHWKSIIRVLGYLKYTQNYGLH 1149

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYI 211
            +TRYP VLEGY D NWIS +KDSKSTSGY+
Sbjct: 1150 FTRYPAVLEGYSDANWISDSKDSKSTSGYV 1179

[Close]

BLAST of Cucsa.143730 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-22
Identity = 65/213 (30.52%), Postives = 112/213 (52.58%), Query Frame = 1


Query: 29  LYVDDMLIIGSNINIIKETKQMLANKFEMKDIGVADVILGIKISRTPQGLVLSQSHYVDK 88
           LYVDD+L+ GS+  ++      L++ F MKD+G     LGI+I   P GL LSQ+ Y ++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 89  ILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIAQLEYSRIIGSLMYSTSCTRPDIAYAVSK 148
           IL      D     TP+    + S +        ++  I+G+L Y T  TRPDI+YAV+ 
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLT-LTRPDISYAVNI 124

Query: 149 LSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH-YTRYPVVLEGYIDVNWISSTKDSKSTS 208
           + +    P    +  + R+   +K T  +GL+ +    + ++ + D +W   T   +ST+
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 209 GYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 241
           G+   LG + +   + +Q  ++RS+ E+E+ AL
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRAL 216

[Close]

BLAST of Cucsa.143730 vs. NCBI nr
Match: gi|147818102|emb|CAN73567.1| (hypothetical protein VITISV_003451 [Vitis vinifera])

HSP 1 Score: 346.3 bits (887), Expect = 4.5e-92
Identity = 168/247 (68.02%), Postives = 201/247 (81.38%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ +GFKINECDKCVY K  E+ +VIVCLYVDDMLI+GS+  +I  TK ML ++F+MKD+
Sbjct: 932  MLSHGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDM 991

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            G+ADVILGIKI RT   L+LSQSHYVDKIL K+ K +  +A+TP+D + HLSKN G+S++
Sbjct: 992  GLADVILGIKIKRTSBELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVS 1051

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            Q+EYSRIIGSLMY  SCTRPDIAYAVSKLSRYTSNPG  HW+ I+R+   L+ T++YGLH
Sbjct: 1052 QVEYSRIIGSLMYLMSCTRPDIAYAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLH 1111

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            YTRYP VLEGY D NWIS+ KDSKS SGY+FTLG   V  KSSKQ  I RSTMESEFIAL
Sbjct: 1112 YTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQXVIARSTMESEFIAL 1171

Query: 241  NKVGEDA 248
            +K GE+A
Sbjct: 1172 DKCGEEA 1178

[Close]

BLAST of Cucsa.143730 vs. NCBI nr
Match: gi|147804664|emb|CAN66637.1| (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 344.4 bits (882), Expect = 1.7e-91
Identity = 167/247 (67.61%), Postives = 200/247 (80.97%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ +GFKINECDKCVY K  E+ +VIVCLYVDDMLI+GS+  +I  TK ML ++F+MKD+
Sbjct: 971  MLSHGFKINECDKCVYVKDTEHGYVIVCLYVDDMLIVGSDDKMITSTKNMLNSRFDMKDM 1030

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            G+ADVILGIKI RT   L+LSQSHYVDKIL K+ K +  +A+TP+D + HLSKN G+S++
Sbjct: 1031 GLADVILGIKIKRTSNELILSQSHYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVS 1090

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            Q+EYSRIIGSLMY  SCTRPDIAYAV KLSRYTSNPG  HW+ I+R+   L+ T++Y LH
Sbjct: 1091 QVEYSRIIGSLMYLMSCTRPDIAYAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYXLH 1150

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            YTRYP VLEGY D NWIS+ KDSKS SGY+FTLG   V  KSSKQT I RSTMESEFIAL
Sbjct: 1151 YTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLGGAAVSWKSSKQTVIARSTMESEFIAL 1210

Query: 241  NKVGEDA 248
            +K GE+A
Sbjct: 1211 DKCGEEA 1217

[Close]

BLAST of Cucsa.143730 vs. NCBI nr
Match: gi|147819561|emb|CAN76565.1| (hypothetical protein VITISV_010942 [Vitis vinifera])

HSP 1 Score: 329.7 bits (844), Expect = 4.3e-87
Identity = 158/245 (64.49%), Postives = 198/245 (80.82%), Query Frame = 1


Query: 1   MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
           M+ N FKINECDK VY ++ ++++VIVCLYVDDMLIIGSN ++IK TK+ML N F+MKD+
Sbjct: 595 MLSNDFKINECDKYVYTRNTQSEYVIVCLYVDDMLIIGSNNDVIKATKKMLTNYFDMKDM 654

Query: 61  GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
           GVADVILGIKI++T  GL+LSQ HY++KILK++ ++D    KTP+D + H +KNNG +I 
Sbjct: 655 GVADVILGIKIAKTSSGLILSQCHYIEKILKRFNQYDDSPIKTPVDLNLHSTKNNGPAID 714

Query: 121 QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
           QLEYSRIIGSLMY  +C   DIAYAV+KLSR+T+N G +HWK ++R+   L++T NYGLH
Sbjct: 715 QLEYSRIIGSLMYVMNCMCLDIAYAVNKLSRFTNNMGKDHWKVLVRVLRYLRYTLNYGLH 774

Query: 181 YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
           Y RYP +LEGY D NWI   KDSKSTSGYIFT+G   + RKSSKQTCI RSTMESEFIAL
Sbjct: 775 YLRYPTLLEGYSDANWIFDMKDSKSTSGYIFTIGGVAISRKSSKQTCIARSTMESEFIAL 834

Query: 241 NKVGE 246
           +K G+
Sbjct: 835 DKAGK 839

[Close]

BLAST of Cucsa.143730 vs. NCBI nr
Match: gi|848917419|ref|XP_012856116.1| (PREDICTED: uncharacterized protein LOC105975464 [Erythranthe guttata])

HSP 1 Score: 321.2 bits (822), Expect = 1.5e-84
Identity = 153/247 (61.94%), Postives = 195/247 (78.95%), Query Frame = 1


Query: 1   MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
           ++ NGFKINECDKCVY K+  N+ V++CL VDDMLI+GSN  II +TK+ML+  F+MKD+
Sbjct: 236 ILANGFKINECDKCVYIKNTPNEFVLICLSVDDMLIMGSNHEIIVKTKKMLSTHFDMKDM 295

Query: 61  GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
           G+ADVILG+KI +   GLV +QSHY++K+L+K+   D   A  PID   HL+KN G+ + 
Sbjct: 296 GLADVILGVKIIKNENGLVFTQSHYIEKVLRKFKMFDSPPATIPIDLKIHLAKNCGEPVD 355

Query: 121 QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
           QL+YS+IIGSLMY  +CTRPDIA++VSKLSR+TSNP ++HW A+ R+   LK+T + GLH
Sbjct: 356 QLKYSQIIGSLMYVMNCTRPDIAHSVSKLSRFTSNPRNDHWNALTRVLRYLKYTLDLGLH 415

Query: 181 YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
           YTRYP VLEGY D NWIS TKD KSTSGY+FT+G   V  KS+KQTCI RSTMESEFIAL
Sbjct: 416 YTRYPSVLEGYSDANWISDTKDYKSTSGYVFTIGGAAVSWKSTKQTCIARSTMESEFIAL 475

Query: 241 NKVGEDA 248
           +K+G +A
Sbjct: 476 DKIGAEA 482

[Close]

BLAST of Cucsa.143730 vs. NCBI nr
Match: gi|113205334|gb|AAT38766.2| (Polyprotein, putative [Solanum demissum])

HSP 1 Score: 312.0 bits (798), Expect = 9.4e-82
Identity = 150/247 (60.73%), Postives = 191/247 (77.33%), Query Frame = 1


Query: 1    MMVNGFKINECDKCVYAKSNENDHVIVCLYVDDMLIIGSNINIIKETKQMLANKFEMKDI 60
            M+ NGFKINECDKCVY K+  N  VIV LYVDDMLI+  +I+ I  TK+ML++KF MKD+
Sbjct: 917  MLANGFKINECDKCVYIKNVLNHEVIVFLYVDDMLIMSKDIDDINATKRMLSSKFAMKDL 976

Query: 61   GVADVILGIKISRTPQGLVLSQSHYVDKILKKYTKHDIVIAKTPIDGSFHLSKNNGDSIA 120
            GVADVILGI+I +TPQGL LSQSHY++KIL K+   +  + K PID S    KN G+S +
Sbjct: 977  GVADVILGIRILKTPQGLALSQSHYIEKILDKFKYLNFNVVKIPIDLSCTFQKNVGESDS 1036

Query: 121  QLEYSRIIGSLMYSTSCTRPDIAYAVSKLSRYTSNPGHNHWKAILRIWGCLKHTKNYGLH 180
            QLEY+R++GSLMY  +CTRPDI+ A+SKLSR+TSNP   HW A+  + G LKH+++Y LH
Sbjct: 1037 QLEYARVLGSLMYIMNCTRPDISCAISKLSRFTSNPNQTHWMAMKHVLGYLKHSQHYALH 1096

Query: 181  YTRYPVVLEGYIDVNWISSTKDSKSTSGYIFTLGSDGVFRKSSKQTCITRSTMESEFIAL 240
            Y +YP ++EGY D NWI+ + + KSTSGY+FTLG   V  KSSKQTCI RSTMES+FIAL
Sbjct: 1097 YNKYPAMIEGYSDANWITGSNEVKSTSGYVFTLGRGAVSWKSSKQTCIARSTMESKFIAL 1156

Query: 241  NKVGEDA 248
            +K G++A
Sbjct: 1157 DKAGKEA 1163

The following BLAST results are available for this feature:

BLAST of Cucsa.143730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	9.5e-42	38.37	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	1.1e-29	32.26	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M810_ARATH	2.4e-21	30.52	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of Cucsa.143730 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AMN2_VITVI	3.1e-92	68.02	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1	[more]
A5AEN5_VITVI	1.2e-91	67.61	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1	[more]
A5B8E0_VITVI	3.0e-87	64.49	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010942 PE=4 SV=1	[more]
Q6L408_SOLDE	6.5e-82	60.73	Polyprotein, putative OS=Solanum demissum GN=SDM1_44t00009 PE=4 SV=2	[more]
A5CBN2_VITVI	1.2e-80	68.57	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1	[more]

BLAST of Cucsa.143730 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00810.1	1.4e-22	30.52	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of Cucsa.143730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147818102\|emb\|CAN73567.1\|	4.5e-92	68.02	hypothetical protein VITISV_003451 [Vitis vinifera]	[more]
gi\|147804664\|emb\|CAN66637.1\|	1.7e-91	67.61	hypothetical protein VITISV_011340 [Vitis vinifera]	[more]
gi\|147819561\|emb\|CAN76565.1\|	4.3e-87	64.49	hypothetical protein VITISV_010942 [Vitis vinifera]	[more]
gi\|848917419\|ref\|XP_012856116.1\|	1.5e-84	61.94	PREDICTED: uncharacterized protein LOC105975464 [Erythranthe guttata]	[more]
gi\|113205334\|gb\|AAT38766.2\|	9.4e-82	60.73	Polyprotein, putative [Solanum demissum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.143730.1	Cucsa.143730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..106 score: 1.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..240 score: 8.5E
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 1..240 score: 8.5E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 114..225 score: 2.58E-8coord: 20..85 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.143730	CSPI05G11760	Wild cucumber (PI 183967)	cgycpiB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.143730	Silver-seed gourd	carcgyB0745
Cucsa.143730	Silver-seed gourd	carcgyB1028
Cucsa.143730	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.143730	Watermelon (97103) v2	cgywmbB244
Cucsa.143730	Wax gourd	cgywgoB283
Cucsa.143730	Cucurbita maxima (Rimu)	cgycmaB0400
Cucsa.143730	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.143730	Cucurbita moschata (Rifu)	cgycmoB0400
Cucsa.143730	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.143730	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.143730	Melon (DHL92) v3.5.1	cgymeB241
Cucsa.143730	Watermelon (Charleston Gray)	cgywcgB244
Cucsa.143730	Watermelon (97103) v1	cgywmB253
Cucsa.143730	Cucurbita pepo (Zucchini)	cgycpeB0387
Cucsa.143730	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.143730	Bottle gourd (USVL1VR-Ls)	cgylsiB232
Cucsa.143730	Melon (DHL92) v3.6.1	cgymedB238