Cucsa.143710 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.143710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RNA-dependent RNA polymerase
Location	scaffold01080 : 35277 .. 39347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGGTTCTATGATCAAATGTCTATCTAAATTTGTTTCATTTTATTTTGAAAAGCATAATTATCCTCTCTTGTAAAGTTGAAACATTTTGCTATACTTGTTTAAATTGTTTCAACTATTGTGTTAGTTGTTTGAACATTAAATCGATGTAACCTTGTTGAAAATGTTGCTATTTGTCTTAAATAGTAGATATGTTACTCACATGTAAGCTTAATAGTCAGGTTATCTTTTTCATGTTTTTCTTATCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTCATGTCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCCATTTTAACAGATCCATTGAAGGCTCAAGAAGCTTTGGAGTTGATGTCTCCCGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATCAACCAGATGTCGAGCCGTATCTGTCAATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACCAGGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCCAGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGAATTGGTCGAGAACACCATTTAGTTATTGAAGGAAATGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAATATACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAAGGATCAAGGTTGGTAGTACATTGACCAATGCTAGTTCTTTCTTGATTTGGACAATAAGTTATGTTTTCAAATTTAAATGCAAGAAAGCCCCTTCACTTCAGAATAGTAACATGTCAACATATATTTTCTAGAATAGGTTCTGTGACTAATAGCTTGCATAATTTTGGTTGGAAGATTTTCCTCTTAAATAGATGTTACTAACCAGATTTTGTACTTGTTTATTTAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGTCTCGACAAATTCCACCTATGGATTATACTCCTGCACCTCCAAATGAGTTAGATCGTGATGTTACAACTGAGGTATTTTGACAGTGGCATGTTTTGAAAACTTGATAACTCATGCCACTTTTTCAGTGTTTAATCTCCGTTTTAATATTTGACATAACAGTGAACTTCAATTTATGTTTTTTTTCTTAAAATAGATTCACGTTGCGCATTGCTTCTCATTAGAAGAGAGACCATTCATGTTTGTATGTGTTCTTAGTCCTAATCTGAAACTACTGTTCTTTACCACAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCTCATACTGCCTTTGCAGATAAAGAGCTCTTTAAAGCAAGGAGTAGTCCTTGTTTGGAGCTTGCAAAGCTATTCTCCGTTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAACAAAGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTAAGCCATATTCGGTCATTTACTCGAGATGTAGCAAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATGTTGAAGATGCCTTCTATCATAAAAGCAATTATGATTACAAGTTGGGGAATTTGCTTGATTATTATGGTATCAAGTCTGAGGCAGAAGTACTTAGTGGGAGTATCATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTAAGGTCTCTGAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCAGATTCGAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTTACATACCATCACTCTTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTGTTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGAAGAAGAGAGAGAGCTGCAAGACTGGCAAGTTTCGACAGATTCGGACATGTGTTAAATCTTGGTGGGAGTTGA

mRNA sequence

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTCATGTCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCCATTTTAACAGATCCATTGAAGGCTCAAGAAGCTTTGGAGTTGATGTCTCCCGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATCAACCAGATGTCGAGCCGTATCTGTCAATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACCAGGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCCAGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGAATTGGTCGAGAACACCATTTAGTTATTGAAGGAAATGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAATATACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAAGGATCAAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGTCTCGACAAATTCCACCTATGGATTATACTCCTGCACCTCCAAATGAGTTAGATCGTGATGTTACAACTGAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCTCATACTGCCTTTGCAGATAAAGAGCTCTTTAAAGCAAGGAGTAGTCCTTGTTTGGAGCTTGCAAAGCTATTCTCCGTTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAACAAAGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTAAGCCATATTCGGTCATTTACTCGAGATGTAGCAAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATGTTGAAGATGCCTTCTATCATAAAAGCAATTATGATTACAAGTTGGGGAATTTGCTTGATTATTATGGTATCAAGTCTGAGGCAGAAGTACTTAGTGGGAGTATCATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTAAGGTCTCTGAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCAGATTCGAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTTACATACCATCACTCTTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTGTTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGAAGAAGAGAGAGAGCTGCAAGACTGGCAAGTTTCGACAGATTCGGACATGTGTTAAATCTTGGTGGGAGTTGA

Coding sequence (CDS)

ATGGGGAAAACAATTCACATTAGTGGATTTCCTTCACATGTCACCGCAGATGCTGTTAAGAATTTTTTGGAGGGTCATACAGGTCCAGGTACTGTGTATGCCATAAAGGTTAGACCACCTAAGAGAGGGGGAGGTAGACTATATGCTATTGTTCAATTCACTAGTGCTACACAAGCTGAGTTGATCATTTCTTTAGCTAATCAACGTCTATGGTACGGATCTTCTTATCTTAAGGCTCGGGCAACCGAGGTTGATATTGTACCAAAACCTAGGACATACATGTATACCTTGGAAGAGTTGCTGCTATGCTTTGGTTGTCAAGTCTCAACTGAAAAGTTTCGTGTTCTATGGGAAGGAAATGTTGATTTGGTGACTTTTGGAATTGGAATGCGGAAAATGAACTTTCATTTGAAATATAAGTCTGTTGAGTATAGGCTTGAGCTTTCATATGAGATCATTTGGCAGATACAACTGCACTGTCCGCGAGATCAGTCTATGAAGTATCTTCTGATCCAGTTAAGTGGAGCTCCTCGGATATATAAAAAAGTTGCACCGAATAGTGGACAAATCTTCGACAATCCACTTTTGAACTTTTTTAAGGAAGCATCTGATGATCAATGGGTTAGAACGACTGATTTTACTTCATCATGCTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCACCTTTTAAACAAAATTTTGCTTATTATGAAGAATTTGAACATGAATTCCGCTTGATAGATGAAGATGCCAATTTTTCTTTTTGTAGAGATCTTGCTCCCATTGTTGATTCTCGTTCTCATGTTCTGCCGTATAAAATTTTGTTTAAAATAAATGCATTAGTTCAATATGGTTGCATTCCATGGCCATTACTTGATGCTAGTTTCTACCGGTTGGTCGAAAGAATAATAACAACAAGAATTGAATTTGTTGAACATGCCTTGGAAAAACTGTTCCATTTAAAGGAATGCAACTATGATCCATCAAACTTTCTTACAGAGCAGTACAGAAAGTATTCAAGACATCCTCCAAATTCTCCTGTTATATCCTTGGATGATGGTTTGGTATATGTTCGTAGGGTTCAAATAACACCTTGTAAGGTGTTCTTCTGTGGTCCTGAAGTCAATGTCTCAAATCGGGTGTTGCGCCATTTTTCTCAATATATTGATAATTTTCTTCGTGTGTCTTTTGTTGATGAGGAGTGGGATAAAATGCGTTCAACAGATTTATTGCCACGGATGTCTTCAAAGAGTGAGGATGGTAAAACTGATATCTACAGGAGAATTCTCTCTGTTCTTAAAAATGGCATAGTCATAGGTGATAAAACCTTTCAGTTTCTTGCATTCTCATCAAGCCAATTAAGAGATAATTCCTTGTGGATGTTTGCTTCCGGACCTGATATTGACGCAGCTTATATTAGAGCGTGGATGGGCGATTTTCGACATATCAAGAATCCCGCAAAGTATGCTGCTAGATTGGGCCAATCATTCGGCTCATCGACAGAGGCACTTTCAGTTGCTAGTAATGAAAGGGAAATTATTCCTGACATAGAGGTTCAACAGGGAGAAATCAAGTATGTCTTTTCTGATGGAATTGGAAAAATATCAAGCAAATTCGCCAAAGAGGTTGCTGCAAAATGTGGTTTCCAAGCCGTCCCGTCTGCTTTTCAAATTCGTTATGGTGGATATAAGGGTGTTGTTGCTGTTGATCCGTACTCAACTATAAAATTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACAAAACTTGACGTCTTAGGCCATAGCAAATACCAACCATGCTTCCTTAATCGTCAACTGATTACTCTCATGTCTACTCTAGGTGTTAGAGACGAAATTTTTGAGAAAAAACAAAGTGAAGCTGTAGAACAATTGGATGCCATTTTAACAGATCCATTGAAGGCTCAAGAAGCTTTGGAGTTGATGTCTCCCGGAGAGAATACTAATATTCTCAAGGAAATGCTCAAATGTGGCTATCAACCAGATGTCGAGCCGTATCTGTCAATGATGTTACAAACTTTCCGGGCATCAAAGTTGCTAGAGTTACGCACCAAATCAAGAATCTTTATCCCAAATGGGAGAGCGATGATGGGATGTCTTGATGAGACCAGGACCTTGGAATATGGGCAGGTATTTGTGCAAATCTCCAGTGGTAGACATCGAAATTTATCTGAATCCTTCGCATTCAATAGAATTGGTCGAGAACACCATTTAGTTATTGAAGGAAATGTTACAGTTGCTAAAAATCCCTGCCTGCACCCTGGTGATGTTCGTGTATTAAAGGCTGTAAATATACCTGGTTTGTACCATATGGTTGACTGTGTAGTTTTTCCTCAAAAAGGATCAAGGCCTCATCCGAATGAATGCTCAGGTAGTGATTTAGATGGTGATATTTACTTTGTCTGTTGGGACACCGAATTGATCCCGTCTCGACAAATTCCACCTATGGATTATACTCCTGCACCTCCAAATGAGTTAGATCGTGATGTTACAACTGAGGATATCCAAGAATATTTTGTGAACTACATGGTTAATGATAGTCTTGGAATCATTGCCAATGCTCATACTGCCTTTGCAGATAAAGAGCTCTTTAAAGCAAGGAGTAGTCCTTGTTTGGAGCTTGCAAAGCTATTCTCCGTTGCTGTGGACTTCCCAAAAACTGGAGTACCAGCTATAATACCTTCTCATTTATATGTCAAAGAGTTTCCTGACTTTATGGAGAAGCCTGACCGACCCTCTTATGAATCAAACAAAGTAATTGGAAAACTTTTTCGGGCTGTGAAAGACATTGCACCAACTTTAAGCCATATTCGGTCATTTACTCGAGATGTAGCAAGAAGGTGTTACGACTGTGATATGGAAGTCGAAGGCTTTGAAGATTATGTTGAAGATGCCTTCTATCATAAAAGCAATTATGATTACAAGTTGGGGAATTTGCTTGATTATTATGGTATCAAGTCTGAGGCAGAAGTACTTAGTGGGAGTATCATGAGGATGTCCAAGTCTTTCACCAGGAGAAGAGATGCAGAAGCAATCAACTTGGCTGTAAGGTCTCTGAGAAAGGAGGCTAGGACATGGTTCAATGCAAGAGAAGGCGCAGATTCGAATTCAGATGATTTATTTGCCAAAGCTTCAGCTTGGTACTATGTTACATACCATCACTCTTATTGGGGCTGCTATAATGAGGGAATGAAACGCGACCATTATTTGAGCTTCCCCTGGTGTGTTTACGACAAACTGATGCAAATCAAGGAGAATAATTTGAGAAGAAGAGAGAGAGCTGCAAGACTGGCAAGTTTCGACAGATTCGGACATGTGTTAAATCTTGGTGGGAGTTGA

Protein sequence

MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS*

Homology

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BLAST of Cucsa.143710 vs. Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1412.5 bits (3655), Expect = 0.0e+00
Identity = 722/1133 (63.72%), Postives = 870/1133 (76.79%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LII+ A +RL+YG SYLKA   E DIVPKPR  ++T+  L + FGCQVST+KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
               V+FGIGMRK++F   +   +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            +K       +F   +++F+ + SD+QW+RTTDFTSS  IGQS++ CL+LP    +P F++
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVDSR-SHVLPYKILFKINALVQYGCIPWP 300
            NFA Y E      LI+  +++S     L P+VD      LP++ILFK+N LVQ  C+  P
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHP--PNSPV 360
             LD  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++Y+K+      P SP 
Sbjct: 301  ALDLDFYRLLNQKKYDRA-LIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360

Query: 361  ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
            ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS 
Sbjct: 361  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421  DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
            DL PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I
Sbjct: 421  DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481  DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
             AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVF
Sbjct: 481  TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541  SDGIGKISSKFAKEVAAKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 600
            SDGIGKIS++FA++VA KCG  +  PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFE
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 660
            S+NTKLDVL  SKYQPC++NRQLITL+STLGV D +FEKKQ E V++LDAILT PL+A E
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 720
            AL LM+PGENTNILK ++ CGY+PD EP+LSMMLQ FRASKLLELRTK+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 780
            GCLDETRTLEYGQV VQ S              R GR    +I G V VAKNPCLHPGDV
Sbjct: 721  GCLDETRTLEYGQVVVQYSDPM-----------RPGRR--FIITGPVVVAKNPCLHPGDV 780

Query: 781  RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 840
            RVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+P R   PMD
Sbjct: 781  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840

Query: 841  YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 900
            YTP P   LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKE  KA S PC+ELAK 
Sbjct: 841  YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900

Query: 901  FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 960
            FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YES  VIGKLFR VK+ AP L  I
Sbjct: 901  FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960

Query: 961  RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1020
            +SFT DVA + YD DMEV+GFE+YV++AFY K+NYD+KLGNL+DYYGIK+EAE+LSG IM
Sbjct: 961  KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYW 1080
            RMSKSFT+RRDAE+I  AVR+LRKE  + FNA E  ++ S    AKASAWY+VTYH SYW
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSYW 1080

Query: 1081 GCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLG 1129
            G YNEG+ RDH+LSF WCVYDKL++IK+ NL RR+R   L   +R  HVL  G
Sbjct: 1081 GLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL---ERLDHVLRFG 1107

[Close]

BLAST of Cucsa.143710 vs. Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 953.4 bits (2463), Expect = 2.3e-276
Identity = 477/745 (64.03%), Postives = 579/745 (77.72%), Query Frame = 1


Query: 376  VFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYR 435
            V+F GPE+NVSNRV+R+FS  I+NFLR+SFVDE+ +K+R+TDL PR +S  +  +T +Y+
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPA 495
            R+LSVL +GI IG K F+FLAFSSSQLRDNS WMFAS   + A+ IR WMGDFR+I+N A
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKC 555
            KYAARLGQSF SSTE L V   E E I DI+      ++VFSDGIGKISS FA EVA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 556  GFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFL 615
              +   PSAFQIRYGGYKGVVAVDP S  KLSLRKSM KF+SDN  +DVL +SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 616  NRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLK 675
            NRQLITL+STLGVRD +FE+KQ EAV QL+ ++TDP  A EA+ELM  GE TN +KE+L 
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 676  CGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQIS 735
            CGYQPD EPYLSM+LQTFRASKLLEL+TKSRI IP GRAMMGCLDETRTL+YGQVF++ +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368

Query: 736  SGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVV 795
            SG + N                 + G V +AKNPCLHPGD+R+L AV++P L+HM +CVV
Sbjct: 369  SGVNDN-------------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQ 855
            FPQ+G RPHPNECSGSDLDGDIYFV WD  LIP R + PMDYTPAP   LD DVT E+++
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSH 915
            EYF NY+VN+SLG+IANAH  FADKE  KA SSPC+ELAKLFS+AVDFPKTGVPA+IP  
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVE 975
            L+VKE+PDFMEK D+ +YES  VIGKL+R +K   P   HI+ FTR+VARR YD DM V+
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 608

Query: 976  GFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAV 1035
            G+EDY+ +A   K  YD+KLGNL+D+YGIKSEAE++SG I++M+K+FT++ DA+AI LAV
Sbjct: 609  GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 668

Query: 1036 RSLRKEARTWFNAREGADS--NSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPW 1095
            RSLRKEAR+ F+     D+    D   AKASAWY+VTYH  +WGCYNEG +R H++SFPW
Sbjct: 669  RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPW 728

Query: 1096 CVYDKLMQIKENNLRRRERAARLAS 1118
            C+Y+KL++IK+     R+    L S
Sbjct: 729  CIYEKLLRIKQRRKFVRKMQPELFS 734

[Close]

BLAST of Cucsa.143710 vs. Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 760.0 bits (1961), Expect = 3.7e-218
Identity = 458/1135 (40.35%), Postives = 661/1135 (58.24%), Query Frame = 1


Query: 4    TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGG--RLYAIVQFTSA---TQ 63
            T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
            A+L+ S    +L + +  L+      DI+P+P      L++++L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
             W+G    +      R++ F +      Y++E+ +E I +    C    + +    L++L
Sbjct: 131  KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184  SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
               P+++K+V  +    F +    F KE  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191  KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244  QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
             +        YY E       +D    F+    + P++++    L  PY+ILF++NALV 
Sbjct: 251  TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304  YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
               I   L  AS   L++ +    +E     L+KL       YDP  F+  Q +   K  
Sbjct: 311  AQKIS--LFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364  RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
            +H P S    L +  ++  +R  +TP K++  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
            E+W K+ +  L    S  S++G      +T+IY R+LS+L  GI +G K F+FLAFS+SQ
Sbjct: 431  EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490

Query: 484  LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
            LR NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E 
Sbjct: 491  LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550

Query: 544  IPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYS 603
            IPDIEV      Y FSDGIGKIS  FAK+VA KCG   VPSAFQIRYGGYKGV+AVD  S
Sbjct: 551  IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSS 610

Query: 604  TIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVE 663
              KLSLR SM KF+S+N  L+V   ++  PCFLNR++I L+STLG+ D +FE  Q+  + 
Sbjct: 611  FRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLS 670

Query: 664  QLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELR 723
             L  +L D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+    S+L EL+
Sbjct: 671  MLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELK 730

Query: 724  TKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGN 783
            ++ RI +P GR ++GC+DE   LEYGQV+V+++  +    S   ++ R   E   V+ G 
Sbjct: 731  SRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGK 790

Query: 784  VTVAKNPCLHPGDVRVLKAVNIPGLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFV 843
            V V KNPCLHPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791  VVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFV 850

Query: 844  CWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADK 903
             WD ++IPS   PPMDY  + P  +D DVT E+I ++FV+YM++D+LG+I+ AH   AD+
Sbjct: 851  SWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADR 910

Query: 904  ELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIG 963
            +  KARS  CLELA L S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S  V G
Sbjct: 911  DPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFG 970

Query: 964  KLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLD 1023
            KL+RAVK    +L+  +          YD  +E  GFE ++E A  H+  Y  KL +L+ 
Sbjct: 971  KLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMI 1030

Query: 1024 YYGIKSEAEVLSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGADSN 1083
            YYG  +E E+L+G +    M +++   R  D  + I L+V+ L KEA  WF   E +  +
Sbjct: 1031 YYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKSCED 1090

Query: 1084 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRR 1110
                   ASAWYYVTY+       N   ++  +LSFPW V D L+ IK  N +R+
Sbjct: 1091 EQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121

[Close]

BLAST of Cucsa.143710 vs. Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 727.6 bits (1877), Expect = 2.0e-208
Identity = 441/1130 (39.03%), Postives = 655/1130 (57.96%), Query Frame = 1


Query: 11   PSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG-GRLYAIVQFTSATQAELIISLANQ- 70
            PS V A+ +  F       G  +A ++    RG   R +  VQF SA  A     LA+  
Sbjct: 19   PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78

Query: 71   RL-WYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVL--WEG-NVDLV 130
            RL  +  + L    + VD++P+            L  G +V+   F     W+G   +++
Sbjct: 79   RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138

Query: 131  TFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVA 190
                G R+++ +L++ S  Y+LE+ +E +    L C  D  M  +L+QL+ APRI+  ++
Sbjct: 139  P---GKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLD-GMGAILLQLNYAPRIHTAIS 198

Query: 191  -PNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFA 250
             P     F +   +  KE +   WVR  DFT + S G+ S+L LKL     +    ++  
Sbjct: 199  GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258

Query: 251  YYEEFEHEFRLIDEDANFSFCRDLAPIVDS-RSHVLPYKILFKINALVQYGCIPWPLLDA 310
            +      E  +   D       ++ P+V   R + +PY++LF++N+L+  G I    ++A
Sbjct: 259  FSGNLG-ELTMNSMDG-VGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNA 318

Query: 311  SFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDDG 370
              ++ ++ +    ++      EK+  L+   Y P  F+  Q   YS    ++ ++S +  
Sbjct: 319  DLFKALQEL---PVDVSRRIFEKMHKLESTCYGPLQFI--QQEAYSMKRSHNVLLSNEGE 378

Query: 371  ------LVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 430
                  L+   RV ITP K+F  GPE  V+N V++H S Y  +F+RV+FVDE+W K+ S 
Sbjct: 379  GEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSN 438

Query: 431  DLLPRMSSK--SEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGP 490
             +  R+     S+  KT +Y RILS+LK G  IG K F+FLAFS+SQLR NS+WMFAS  
Sbjct: 439  AISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNA 498

Query: 491  DIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKY 550
             ++A  IR WMG F +I++ +K AAR+GQ F SS +   V   + E+IPDIE+     KY
Sbjct: 499  SLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKY 558

Query: 551  VFSDGIGKISSKFAKEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC 610
            +FSDGIGKIS +FAK VA   G     +PSAFQIRYGGYKGV+A+DP S+I LSLR SM 
Sbjct: 559  IFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMK 618

Query: 611  KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 670
            KFES++  L++   SK QPC++NR++I+L+STLG+RDEIF   Q + + + + +LT+   
Sbjct: 619  KFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEV 678

Query: 671  AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 730
            A   L  +   E    +K +L+ GY+P  EPYLSM+L+  + ++L ++RT+ +I +P GR
Sbjct: 679  ALSVLGKLGGSETKTAVKMLLQ-GYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGR 738

Query: 731  AMMGCLDETRTLEYGQVFVQI--SSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCL 790
             ++GCLDET  LEYGQV+++I  +S   ++ ++S+ +N  G+   +V  G V + KNPCL
Sbjct: 739  VLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV--GKVAITKNPCL 798

Query: 791  HPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQ 850
            HPGD+RVL+A+  P L  MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WD +LIP + 
Sbjct: 799  HPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKV 858

Query: 851  IPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCL 910
              PMDYT   P  +D  VT E+IQ++FV+YM+NDSLG I+ AH   AD+   KARS  CL
Sbjct: 859  DTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECL 918

Query: 911  ELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAP 970
            +LA L S+AVDF KTG PA +P  L  +E+PDFME+ ++P Y SN V+GKL+R+      
Sbjct: 919  QLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHME 978

Query: 971  TLSHIRSFTRDVAR--RCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1030
                  + +   A+    YD D+EV G +++++ A  +   Y+ KL  L++YY  + E E
Sbjct: 979  KSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDE 1038

Query: 1031 VLSGSIMRMSKSFTRRRD-------AEAINLAVRSLRKEARTWFNAREGADSNSDDLFAK 1090
            +L+G+I   +K    +RD        + I  AV +L +EAR W      +    +D    
Sbjct: 1039 ILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLL----SSRKEEDASRM 1098

Query: 1091 ASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRER 1112
            ASAWY VTYH        +  +   + SFPW   D L+ IK ++  RR R
Sbjct: 1099 ASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRR 1120

[Close]

BLAST of Cucsa.143710 vs. Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 5.8e-155
Identity = 364/977 (37.26%), Postives = 535/977 (54.76%), Query Frame = 1


Query: 169  LLIQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLK 228
            LL++L+ AP ++ + A +    F  P+  F     DD W+RTTD T S +IG+     + 
Sbjct: 236  LLLRLAAAPLVHYRTADDD---FHEPV-PFDLLDDDDPWIRTTDITPSGAIGRCGVYRIS 295

Query: 229  LPNGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLA---------PIVD-----SR 288
              + R  P   +   Y  E      ++D    +   R L          P+ D       
Sbjct: 296  F-SARFWPKMDRALDYMRE--RRVAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQH 355

Query: 289  SHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNY 348
            +  L + +LF +NALV  G I    L   F+ L+ R   +       AL   +  K   +
Sbjct: 356  AEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLLGR---SEENVNVAALRDFWGDKFPVF 415

Query: 349  DPSNFLTEQYRKYSRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFS 408
            D    L +   + +R+P       + D    VRR+ ITP + +   PEV  SNRVLRH+ 
Sbjct: 416  DACGRLKKALNRVARNP-KLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYH 475

Query: 409  QYIDNFLRVSFVDEEWDKMRSTDL-------LPRMSSKSEDGKTDIYRRILSVLKNGIVI 468
            +  D FLRV+F+DE    + +  L       +  + S     KT +Y+R+  +L  G  +
Sbjct: 476  EVADRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHM 535

Query: 469  GDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGS 528
              + + FLAFSS+QLRD S W FA         IR WMG F   KN AK+AAR+GQ F S
Sbjct: 536  CGRKYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSS 595

Query: 529  STEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGF-QAVPSAFQI 588
            +   +++  +E +   D  V     +Y+FSDGIGKI+   A EVA +       PSA+QI
Sbjct: 596  TYATVTMRPDEVDESFDDVVHN---EYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQI 655

Query: 589  RYGGYKGVVAV--DPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMST 648
            R+ G+KGV+AV        +L LR SM KFES++  L+V+  +K+QP FLNRQ+I L+S+
Sbjct: 656  RFAGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSS 715

Query: 649  LGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPY 708
            L V D IF + Q   +  L+ IL+D   A E L   S  ++ N    ML  G++P  EP+
Sbjct: 716  LNVPDSIFWQMQETMLSNLNNILSDRDVAFEVLTT-SCADDGNTAALMLSAGFEPRTEPH 775

Query: 709  LSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQ--ISSGRHRNLS 768
            L  ML   R+++L +L  K+RIF+P GR +MGCLDE   LE GQ F++  + S     + 
Sbjct: 776  LKAMLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVK 835

Query: 769  ESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRP 828
                F+   +   +++ G V +AKNPCLHPGDVR+L+AV++P L+H+VDC+VFPQKG RP
Sbjct: 836  HGSRFSSTDKNTEVIL-GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGERP 895

Query: 829  HPNECSGSDLDGDIYFVCWDTELIP--SRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNY 888
            H NE SGSDLDGD+YFV WD +LIP   +   PMDY+P    +L R V+  DI ++F+  
Sbjct: 896  HANEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKN 955

Query: 889  MVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEF 948
            M++++LG I NAH   AD   + A    C+ LA+L + AVDFPKTG  AI+P HL  K +
Sbjct: 956  MISENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVY 1015

Query: 949  PDFMEKPDRPSYESNKVIGKLFRAVKDIA--PTLSHIRSFTRDVARRCYDCDMEVEGFED 1008
            PDFM K D  SY+S K++G+L+R++++ +    +S       D+    YD D+EV G  D
Sbjct: 1016 PDFMGKEDGQSYKSEKILGRLYRSIQEASNGDVVSQEVCTPNDLP---YDIDLEVPGASD 1075

Query: 1009 YVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRD--AEAINLAVRS 1068
            ++  A+  K +YD +L  LL  Y +++EAE+++G I  + K+ ++++    + +  A  +
Sbjct: 1076 FLASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHITFLVKNSSKKQGDIKDRLKTAYSA 1135

Query: 1069 LRKEARTWFNA-----REGADSNSDDLF-AKASAWYYVTYHHSY----WGCYN-EGMKRD 1103
            LRKE ++ F +      E  D   + L+  KASAWY VTYH  +     G    +G +  
Sbjct: 1136 LRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEIP 1192

[Close]

BLAST of Cucsa.143710 vs. TrEMBL
Match: E9NWK6_CUCSA (RNA-dependent RNA polymerase 1a OS=Cucumis sativus GN=RDR1a PE=2 SV=1)

HSP 1 Score: 2301.6 bits (5963), Expect = 0.0e+00
Identity = 1130/1130 (100.00%), Postives = 1130/1130 (100.00%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
            VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
            NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
            DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
            GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
            TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
            VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840

Query: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
            PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV
Sbjct: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900

Query: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
            DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR
Sbjct: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960

Query: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
            DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS
Sbjct: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020

Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
            FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080

Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
            GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS
Sbjct: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1130

[Close]

BLAST of Cucsa.143710 vs. TrEMBL
Match: A0A0S1YD00_CUCME (RNA-dependent RNA polymerase 1a OS=Cucumis melo GN=RDR1a PE=2 SV=1)

HSP 1 Score: 2164.4 bits (5607), Expect = 0.0e+00
Identity = 1061/1130 (93.89%), Postives = 1094/1130 (96.81%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
            NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
            VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP R+I PMDYTPA 
Sbjct: 781  VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPAL 840

Query: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
            P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841  PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900

Query: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
            DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960

Query: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
            DVARRCYDCDMEVEGFEDYVEDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020

Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
            FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG YNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGYYNE 1080

Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
            GMKRD+YLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFG+VLNLGGS
Sbjct: 1081 GMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGGS 1129

[Close]

BLAST of Cucsa.143710 vs. TrEMBL
Match: A0A0A0KSM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G239140 PE=4 SV=1)

HSP 1 Score: 1791.5 bits (4639), Expect = 0.0e+00
Identity = 882/882 (100.00%), Postives = 882/882 (100.00%), Query Frame = 1


Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
           GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
           LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
           SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
           TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
           VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840

Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF 883
           PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF
Sbjct: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF 882

[Close]

BLAST of Cucsa.143710 vs. TrEMBL
Match: A0A0A0KSM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G239140 PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 7.0e-147
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 875  AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES 934
            AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES
Sbjct: 917  AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES 976

Query: 935  NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL 994
            NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL
Sbjct: 977  NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL 1036

Query: 995  GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN 1054
            GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN
Sbjct: 1037 GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN 1096

Query: 1055 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR 1114
            SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR
Sbjct: 1097 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR 1156

Query: 1115 LASFDRFGHVLNLGGS 1131
            LASFDRFGHVLNLGGS
Sbjct: 1157 LASFDRFGHVLNLGGS 1172

HSP 2 Score: 1558.1 bits (4033), Expect = 0.0e+00
Identity = 774/1126 (68.74%), Postives = 917/1126 (81.44%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            M KT+ +SGFPS  TA AV+ FLE HTG GTV A+K+R  + GG R YAIVQFT+   AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
             IISLAN RLWYG SYL AR  + DI+P+PR++++T+E + L FG Q S EKF  +W GN
Sbjct: 61   QIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
               V FG+GMRK++F L +   EY+L L +E IWQI+LH PR Q++KYLLIQL GAPRIY
Sbjct: 121  NVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            ++  P+S  +F++PLLN+F++  D+QWVRTTDFT SC IG SSSLCL+LPN  QLP F +
Sbjct: 181  ERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNFNE 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWPL 300
            NF YY+E E  F +++    FS   DL PIV   S V LPY ILF++N LVQ GC+   +
Sbjct: 241  NFFYYKENEGTF-VLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGSM 300

Query: 301  LDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPVI 360
            LD  FYRLV+      +  +E+ALEKL+HLKEC Y+PS +  EQY+KY  S +PP SPV+
Sbjct: 301  LDDIFYRLVDPN-RMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 360

Query: 361  SLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTD 420
            SLD GLVYV +VQITPCKVFFCGPEVNVSNRVLR + + IDNFLRVSFVDEE +K+ STD
Sbjct: 361  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 420

Query: 421  LLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 480
            + PR SS++E  +T IY RILS L+NGIVIGDK F+FLAFSSSQLR+NS WMFAS   + 
Sbjct: 421  VSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLT 480

Query: 481  AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFS 540
            AA IRAWMG F  I+N A+YAARLGQSFGSSTE LSV+S+E EIIPDIEV +G  +Y+FS
Sbjct: 481  AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 540

Query: 541  DGIGKISSKFAKEVAAKCGFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFES 600
            DGIGKIS++FA++VA KCG +   PSAFQIRY GYKGVVAVDP S+ KLSLR+SM K+ES
Sbjct: 541  DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 600

Query: 601  DNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEA 660
            +NTKLDVL HSKYQPCFLNRQLITL+STLGV D  FE+KQ EAV+QLDA+LTDPL+AQEA
Sbjct: 601  ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 660

Query: 661  LELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMG 720
            LELMSPGENTNILKEML CGYQPD EP+LSMMLQTFRASKLLELRTK+RIFIPNGR+MMG
Sbjct: 661  LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 720

Query: 721  CLDETRTLEYGQVFVQISSGRHRNLSESF-AFNRIGREHHLVIEGNVTVAKNPCLHPGDV 780
            CLDETRTLE+GQVFV+ S  R RNL +S   F+  GR    +I+G+V VAKNPCLHPGD+
Sbjct: 721  CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVAKNPCLHPGDL 780

Query: 781  RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 840
            R+LKAV++P L+HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD ELIPS+QI PMD
Sbjct: 781  RILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPMD 840

Query: 841  YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 900
            YTP PP +LD DVT E+++EYF NY+VNDSLG+IANAHTA ADKE  KA S PC+ELA+ 
Sbjct: 841  YTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARK 900

Query: 901  FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 960
            FS+AVDFPKTGVPA IPS+L  +E+PDFMEKPD+PSYES  VIGKLFR VKDIAP  S I
Sbjct: 901  FSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSI 960

Query: 961  RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1020
            RSFT DVAR+CYD DMEV+GFEDY++DAFY+KSNYDYKLGNL++YYGIK+EAE+LSGS M
Sbjct: 961  RSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSFM 1020

Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYYVTYHHSY 1080
            +MSKSFT++RDAEAI +AVRSL+KEAR+WFN +  G DS +DD+ AKASAWY+VTYHH+Y
Sbjct: 1021 KMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHNY 1080

Query: 1081 WGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDR 1121
            WGCYNEGM RDH+LSFPWCVYDKL+QIK  N  R  R+  L S +R
Sbjct: 1081 WGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVER 1124

[Close]

BLAST of Cucsa.143710 vs. TrEMBL
Match: W9RFK1_9ROSA (RNA-dependent RNA polymerase 1 OS=Morus notabilis GN=L484_006779 PE=4 SV=1)

HSP 1 Score: 1531.5 bits (3964), Expect = 0.0e+00
Identity = 766/1136 (67.43%), Postives = 904/1136 (79.58%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTI +SGFPSHV+A++VK FLEGHTG GTVYAIK+RP K GG R YAIVQF +   AE
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE-G 120
            LII LAN RLWYG SYL AR  E DIVPKPR  +Y+L+ + L FGCQ+S EKF  LW  G
Sbjct: 61   LIIRLANPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVG 120

Query: 121  NVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRI 180
            NV  V FG+G+R++NF+L Y  VEYRL+L YE +WQI+LH PR Q+ KYLLIQL GAPR+
Sbjct: 121  NVS-VDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPRV 180

Query: 181  YKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFK 240
            Y+K    S  I +NPL N+FK+  DDQWVR TDFT SC IG SS+L L+LP G  LP  +
Sbjct: 181  YEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDLR 240

Query: 241  QNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWP 300
            +NF YY+E E  F +++  ++FS   DL PIV   S + LP++ +FKIN L+Q GC+  P
Sbjct: 241  ENFVYYKESEERF-ILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 300

Query: 301  LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPV 360
             LD  FYRLV+      ++ + +ALEKLF+LKEC Y+P+ +L EQYRKY  +  PP  P 
Sbjct: 301  TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 360

Query: 361  ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
            I+LD GLVYVRRVQ+TP KV+FCGPE+NVSNRVLR +  YID FLRVSFVDEE +K+ ST
Sbjct: 361  IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 420

Query: 421  DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
            DL PR S+ +ED +T IYRRILSVL+NGI IGD+ F+FLAFSSSQLRDNSLWMFA+    
Sbjct: 421  DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 480

Query: 481  DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
             A  IR W+GDFR I+N AKYAARLGQSFGSSTE L+V  +E E+I DIE+++G +KYVF
Sbjct: 481  SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 540

Query: 541  SDGIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 600
            SDGIGKISS FAK VA KCG +  VPSAFQIRY GYKGVVAVDP S+ KLSLRKSM K+E
Sbjct: 541  SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 600

Query: 601  SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 660
            S+  KLDVL +SK Q C+LNRQLITL+STLGV D +FEKKQ EAV+QL+AIL DPL+A+E
Sbjct: 601  SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 660

Query: 661  ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 720
            AL+LMS GE TNILKE+L CGYQP+ EP+LSMMLQ FRASKL ELRTK+RI IP+GRAMM
Sbjct: 661  ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 720

Query: 721  GCLDETRTLEYGQVFVQISSGRHRNLSE-SFAFNRIGREHHLVIEGNVTVAKNPCLHPGD 780
            GCLDE RTLEYG+VFVQ S   HR   E SF     G   + ++ G V VAKNPCLHPGD
Sbjct: 721  GCLDEMRTLEYGEVFVQFSGITHRPFFEDSFMLGGTGSGQNYIVVGRVVVAKNPCLHPGD 780

Query: 781  VRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPM 840
            VRVL+AVN+P L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP +Q  PM
Sbjct: 781  VRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEPM 840

Query: 841  DYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAK 900
            DY+PAP   LD DV  E++QEYF NY+VNDSLGIIANAHTAFADKE  KA S  C+ELA+
Sbjct: 841  DYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELAR 900

Query: 901  LFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSH 960
            LFS+AVDFPKTGVPA+IP  LYVKE+PDFMEK ++P+YES  VIGKLFR VKDIAP +  
Sbjct: 901  LFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGS 960

Query: 961  IRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSI 1020
            +  FT++VA R YD DME +GFEDY++DAFY+KSNYDYKLGNLLDYYGIKSEAE++ GSI
Sbjct: 961  LHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGSI 1020

Query: 1021 MRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAR-EGADSNSDDLFAKASAWYYVTYHHS 1080
            MRMSKSFT+RRDAE+IN+AVR+LRKEARTWFN +    DS +DD++AKASAWYYVTYHHS
Sbjct: 1021 MRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHHS 1080

Query: 1081 YWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDR-FGHVLNLG 1129
            YWGCYNEGM RDHYLSFPWCVYDKL+QIK +    R R+ +++S +R F   L+LG
Sbjct: 1081 YWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVR-RSLQMSSLERAFDRRLHLG 1133

[Close]

BLAST of Cucsa.143710 vs. TAIR10
Match: AT1G14790.1 (AT1G14790.1 RNA-dependent RNA polymerase 1)

HSP 1 Score: 1412.5 bits (3655), Expect = 0.0e+00
Identity = 722/1133 (63.72%), Postives = 870/1133 (76.79%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTI + GFP+ V+A+ VK FLE  TG GTVYAIKVR PK+GG R+YAIVQFTS     
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LII+ A +RL+YG SYLKA   E DIVPKPR  ++T+  L + FGCQVST+KF  LW   
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
               V+FGIGMRK++F   +   +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            +K       +F   +++F+ + SD+QW+RTTDFTSS  IGQS++ CL+LP    +P F++
Sbjct: 181  EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVDSR-SHVLPYKILFKINALVQYGCIPWP 300
            NFA Y E      LI+  +++S     L P+VD      LP++ILFK+N LVQ  C+  P
Sbjct: 241  NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300

Query: 301  LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHP--PNSPV 360
             LD  FYRL+ +    R   ++H LEKLFHL EC Y+P+++L ++Y+K+      P SP 
Sbjct: 301  ALDLDFYRLLNQKKYDRA-LIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360

Query: 361  ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
            ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS 
Sbjct: 361  ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420

Query: 421  DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
            DL PR S++    +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA    I
Sbjct: 421  DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480

Query: 481  DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
             AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+     +YVF
Sbjct: 481  TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540

Query: 541  SDGIGKISSKFAKEVAAKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 600
            SDGIGKIS++FA++VA KCG  +  PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFE
Sbjct: 541  SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600

Query: 601  SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 660
            S+NTKLDVL  SKYQPC++NRQLITL+STLGV D +FEKKQ E V++LDAILT PL+A E
Sbjct: 601  SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660

Query: 661  ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 720
            AL LM+PGENTNILK ++ CGY+PD EP+LSMMLQ FRASKLLELRTK+RIFI  GR+MM
Sbjct: 661  ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720

Query: 721  GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 780
            GCLDETRTLEYGQV VQ S              R GR    +I G V VAKNPCLHPGDV
Sbjct: 721  GCLDETRTLEYGQVVVQYSDPM-----------RPGRR--FIITGPVVVAKNPCLHPGDV 780

Query: 781  RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 840
            RVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+P R   PMD
Sbjct: 781  RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840

Query: 841  YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 900
            YTP P   LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKE  KA S PC+ELAK 
Sbjct: 841  YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900

Query: 901  FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 960
            FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YES  VIGKLFR VK+ AP L  I
Sbjct: 901  FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960

Query: 961  RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1020
            +SFT DVA + YD DMEV+GFE+YV++AFY K+NYD+KLGNL+DYYGIK+EAE+LSG IM
Sbjct: 961  KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYW 1080
            RMSKSFT+RRDAE+I  AVR+LRKE  + FNA E  ++ S    AKASAWY+VTYH SYW
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSYW 1080

Query: 1081 GCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLG 1129
            G YNEG+ RDH+LSF WCVYDKL++IK+ NL RR+R   L   +R  HVL  G
Sbjct: 1081 GLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL---ERLDHVLRFG 1107

[Close]

BLAST of Cucsa.143710 vs. TAIR10
Match: AT4G11130.1 (AT4G11130.1 RNA-dependent RNA polymerase 2)

HSP 1 Score: 760.0 bits (1961), Expect = 2.1e-219
Identity = 458/1135 (40.35%), Postives = 661/1135 (58.24%), Query Frame = 1


Query: 4    TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGG--RLYAIVQFTSA---TQ 63
            T+ IS  P  + AD +  FLE H G  TV+A+++ P  R     R +A VQFT+    ++
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70

Query: 64   AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
            A+L+ S    +L + +  L+      DI+P+P      L++++L  G   S EK F  L 
Sbjct: 71   AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130

Query: 124  -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
             W+G    +      R++ F +      Y++E+ +E I +    C    + +    L++L
Sbjct: 131  KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190

Query: 184  SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
               P+++K+V  +    F +    F KE  D  W+RTTDF+ S SIG S+  CL++ NG 
Sbjct: 191  KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250

Query: 244  QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
             +        YY E       +D    F+    + P++++    L  PY+ILF++NALV 
Sbjct: 251  TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310

Query: 304  YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
               I   L  AS   L++ +    +E     L+KL       YDP  F+  Q +   K  
Sbjct: 311  AQKIS--LFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370

Query: 364  RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
            +H P S    L +  ++  +R  +TP K++  GPE+  +N V+++F++++ +F+RV+FV+
Sbjct: 371  KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430

Query: 424  EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
            E+W K+ +  L    S  S++G      +T+IY R+LS+L  GI +G K F+FLAFS+SQ
Sbjct: 431  EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490

Query: 484  LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
            LR NS+WMFAS   + A  IR WMG FR I++ +K AAR+GQ F +S + L V + + E 
Sbjct: 491  LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550

Query: 544  IPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYS 603
            IPDIEV      Y FSDGIGKIS  FAK+VA KCG   VPSAFQIRYGGYKGV+AVD  S
Sbjct: 551  IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSS 610

Query: 604  TIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVE 663
              KLSLR SM KF+S+N  L+V   ++  PCFLNR++I L+STLG+ D +FE  Q+  + 
Sbjct: 611  FRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLS 670

Query: 664  QLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELR 723
             L  +L D   A   L+ +S   + N+L +ML  GY P  EPYLSMML+    S+L EL+
Sbjct: 671  MLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELK 730

Query: 724  TKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGN 783
            ++ RI +P GR ++GC+DE   LEYGQV+V+++  +    S   ++ R   E   V+ G 
Sbjct: 731  SRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGK 790

Query: 784  VTVAKNPCLHPGDVRVLKAVNIPGLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFV 843
            V V KNPCLHPGD+RVL A+          +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791  VVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFV 850

Query: 844  CWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADK 903
             WD ++IPS   PPMDY  + P  +D DVT E+I ++FV+YM++D+LG+I+ AH   AD+
Sbjct: 851  SWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADR 910

Query: 904  ELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIG 963
            +  KARS  CLELA L S AVDF KTG PA +P  L  +EFPDF+E+ ++P+Y S  V G
Sbjct: 911  DPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFG 970

Query: 964  KLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLD 1023
            KL+RAVK    +L+  +          YD  +E  GFE ++E A  H+  Y  KL +L+ 
Sbjct: 971  KLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMI 1030

Query: 1024 YYGIKSEAEVLSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGADSN 1083
            YYG  +E E+L+G +    M +++   R  D  + I L+V+ L KEA  WF   E +  +
Sbjct: 1031 YYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKSCED 1090

Query: 1084 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRR 1110
                   ASAWYYVTY+       N   ++  +LSFPW V D L+ IK  N +R+
Sbjct: 1091 EQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121

[Close]

BLAST of Cucsa.143710 vs. TAIR10
Match: AT3G49500.1 (AT3G49500.1 RNA-dependent RNA polymerase 6)

HSP 1 Score: 549.7 bits (1415), Expect = 4.3e-156
Identity = 388/1075 (36.09%), Postives = 563/1075 (52.37%), Query Frame = 1


Query: 92   TYMYTLEELLLCFGCQVSTEKFRVLWEGN-VDLV------TFGIGMRKMN-FHLKYK--- 151
            T  Y L  + L  G  VS + F V W    VD +      T     RK   F  K     
Sbjct: 127  TVPYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186

Query: 152  ---SVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLN 211
               + +Y+LEL    I  ++ +  +      L++QL+ +PR++ + A +   I+D    +
Sbjct: 187  AVINCDYKLELLVRDIQTVRQY--KTLHGFVLILQLASSPRVWYRTADDD--IYDTVPGD 246

Query: 212  FFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQ------LPPFKQNFAYYEEFEHE 271
               +  DD W+RTTDFT   +IG+  S  + +    +      L  F+      E     
Sbjct: 247  LLDD--DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWP 306

Query: 272  FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERI 331
             R+ +E        D    +  +  +  ++I+F +N+++  G      L   F+ L+   
Sbjct: 307  PRIRNEPCFGEPVSDHFFCIHHKEGI-SFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 366

Query: 332  ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS-------RHPPNSPVISLDDGLV 391
               R +  +  +  L HL  C Y    F  + Y++         ++P         + + 
Sbjct: 367  ---RNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWIQKNPKLLGSHEQSEDIS 426

Query: 392  YVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDL------ 451
             +RR+ ITP + +   PEV +SNRVLR +    + FLRV+F+DE    + S  L      
Sbjct: 427  EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 486

Query: 452  -LPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 511
             +  ++S S   KT +++R+ S+L +G  +  + + FLAFS++QLRD S W FA      
Sbjct: 487  IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 546

Query: 512  AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVF 571
             + I+ WMG F+  KN AK AAR+G  F S+   + V  +E +  +PDIE + G   YVF
Sbjct: 547  VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVF 606

Query: 572  SDGIGKISSKFAKEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMC 631
            SDGIG I+   A EV  K        P A+QIRY G+KGVVA  P  +  I+L+LR SM 
Sbjct: 607  SDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMK 666

Query: 632  KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 691
            KF S +T L++   +++QP FLNRQ+ITL+S LGV DEIF   Q   + +L+ IL D   
Sbjct: 667  KFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDV 726

Query: 692  AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 751
            A E L   S  E  N    ML  G++P  EP+L  ML + R ++L  LR KSRIF+ +GR
Sbjct: 727  AFEVLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGR 786

Query: 752  AMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHL-VIEGNVTVAKNPCLH 811
             +MGCLDE   LE+GQ F+Q+S     N            +  L V++G V +AKNPCLH
Sbjct: 787  WLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLH 846

Query: 812  PGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP--SR 871
            PGDVR+L+AV++P L+HM DC++FPQKG RPH NE SGSDLDGD+YFV WD +LIP   +
Sbjct: 847  PGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRK 906

Query: 872  QIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPC 931
              P M Y  A    L R V  +DI ++F   + N+ LG I NAH   AD+  + A    C
Sbjct: 907  SYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEEC 966

Query: 932  LELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIA 991
            L LA+L + AVDFPKTG    +P HL  K +PDFM K D  +Y+SNK++G+L+R VK++ 
Sbjct: 967  LLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVY 1026

Query: 992  PTLSHIRS-FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1051
               +   S  + D +   YD  +E+ GFED + +A+ HK  YD +L  LL  Y ++ E E
Sbjct: 1027 DEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEE 1086

Query: 1052 VLSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA----REGADSNSDDLF--A 1111
            +++G I  M K  ++++    E +  +  SL+KE R  F       E       ++    
Sbjct: 1087 IVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEK 1146

[Close]

BLAST of Cucsa.143710 vs. TAIR10
Match: AT2G19910.1 (AT2G19910.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-24
Identity = 115/421 (27.32%), Postives = 180/421 (42.76%), Query Frame = 1


Query: 564 FQIRYGGY--KGVVAVD---PYSTIKLSLRKSMCKFESDNT--------KLDVLGHSKY- 623
           F+I Y GY  KG    +   P  T+++  R SM K   D T         L+V+  S   
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQV--RPSMIKVYEDRTLSNLSTFNSLEVVTTSNPP 514

Query: 624 QPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNIL 683
           +   L+R L+ L+S  GV ++ F       +E+   I      A +A       + T   
Sbjct: 515 RKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT--- 574

Query: 684 KEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQV 743
            +M+  G   D EPYL   L     ++   L+   R  I     +MG +D T  L+  ++
Sbjct: 575 ADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI 634

Query: 744 FVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHM 803
            V + SG+                    I G+V V +NP LH GD+ VLKA  +  L   
Sbjct: 635 CVILHSGQ--------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDY 694

Query: 804 VD----CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP---------SRQIPPMDY 863
           V      V FPQKG R   +E +G D DGD+YF+  + +L+          S   P   Y
Sbjct: 695 VGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIY 754

Query: 864 TPAPPNELDRDVTTEDIQEYFVN--YMVNDSLGIIANAHTAFAD----------KELFKA 923
               P+EL  +   E++ + F+   +   D +G+ A+      D          KE ++ 
Sbjct: 755 CGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE- 814

Query: 924 RSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRA 946
           R    L+L  ++  A+D PK G    +P  L +K FP +ME+  +  + S  ++G +F  
Sbjct: 815 RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDT 847

[Close]

BLAST of Cucsa.143710 vs. TAIR10
Match: AT2G19930.1 (AT2G19930.1 RNA-dependent RNA polymerase family protein)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-24
Identity = 163/646 (25.23%), Postives = 254/646 (39.32%), Query Frame = 1


Query: 398 DNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFL-- 457
           DN L V F D              +   S     D Y     + KNGI+IG + +QF   
Sbjct: 242 DNVLTVKFAD--------------VQKSSSTYSIDHYFTYKGIAKNGIMIGLRRYQFFVF 301

Query: 458 --AFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNP------------------- 517
                  + +D       S   +   +IR     F  ++NP                   
Sbjct: 302 KDGGKEEKKKD------LSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVH 361

Query: 518 -----AKYAARLGQSFGSSTEALSVASN--EREIIPDIEVQQGEIKYVF---------SD 577
                A Y AR      S T+ L V       + I DI     + K V          SD
Sbjct: 362 RAPTLANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSD 421

Query: 578 GIGKISSKFAK--------------EVAAKCGFQAVPSAFQIR--YGGY--KGV------ 637
           G G IS   A+              E   +  +Q  P   Q R  Y GY  KG       
Sbjct: 422 GTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKK 481

Query: 638 -----VAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRD 697
                V V P S IK+S   S+  F + N    V   +  +   L++ L+ L+S  G+ +
Sbjct: 482 LCPRTVQVRP-SMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPN 541

Query: 698 EIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGY---QPDVEPYLS 757
           E F       +E+  +I  +   A  A       ++ N   +M+  G    +P ++ YLS
Sbjct: 542 EFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAA-QMILVGIPLDEPHLKNYLS 601

Query: 758 MMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFA 817
           ++L+T +     +L+   ++ +     +MG +D T  L+  +V V + SG+         
Sbjct: 602 ILLKTEKN----DLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ--------- 661

Query: 818 FNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVD----CVVFPQKGSRP 877
                      I G V V +NP LH GD+ +LKA  +  L   V      V FPQKG R 
Sbjct: 662 -----------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRS 721

Query: 878 HPNECSGSDLDGDIYFVCWDTELI----PSRQIPPMDYTP-------APPNELDRDVTTE 937
             +E +G D DGD+YF+  + EL+    PS   P +  TP         P++L  +   E
Sbjct: 722 LGDEIAGGDFDGDMYFISRNPELLENFKPSE--PWVSLTPPSKSNSGRAPSQLSPEELEE 781

Query: 938 DIQEYFV--NYMVNDSLGIIANAHTAFADKELF--------KAR-SSPCLELAKLFSVAV 947
           ++ E F+   +  ++ +GI A++     D+ L         KA      LEL  ++  A+
Sbjct: 782 ELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDAL 835

[Close]

BLAST of Cucsa.143710 vs. NCBI nr
Match: gi|525507304|ref|NP_001267692.1| (RNA-dependent RNA polymerase 1-like [Cucumis sativus])

HSP 1 Score: 2301.6 bits (5963), Expect = 0.0e+00
Identity = 1130/1130 (100.00%), Postives = 1130/1130 (100.00%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
            VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
            NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
            DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
            GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
            TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
            VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840

Query: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
            PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV
Sbjct: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900

Query: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
            DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR
Sbjct: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960

Query: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
            DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS
Sbjct: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020

Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
            FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080

Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
            GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS
Sbjct: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1130

[Close]

BLAST of Cucsa.143710 vs. NCBI nr
Match: gi|659130594|ref|XP_008465250.1| (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo])

HSP 1 Score: 2171.7 bits (5626), Expect = 0.0e+00
Identity = 1063/1129 (94.15%), Postives = 1093/1129 (96.81%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
            NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
            VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDYTPA 
Sbjct: 781  VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPAL 840

Query: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
            P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841  PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900

Query: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
            DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960

Query: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
            DVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961  DVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020

Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
            FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080

Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1130
            GMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 GMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1128

[Close]

BLAST of Cucsa.143710 vs. NCBI nr
Match: gi|948561981|gb|ALM88236.1| (RNA-dependent RNA polymerase 1a [Cucumis melo])

HSP 1 Score: 2164.4 bits (5607), Expect = 0.0e+00
Identity = 1061/1130 (93.89%), Postives = 1094/1130 (96.81%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
            LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61   LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
            VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121  VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            KKVAP+SGQIFDNP+LNFF E  DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181  KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
            NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241  NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300

Query: 301  DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
            D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301  DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360

Query: 361  DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
            DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361  DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421  RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
            RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421  RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
            IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481  IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540

Query: 541  GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
            GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541  GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600

Query: 601  LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
            LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601  LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661  SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
            SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661  SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721  TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
            T TLEYGQVFVQIS GRHRNLSESFAFN  G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721  TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780

Query: 781  VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
            VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP R+I PMDYTPA 
Sbjct: 781  VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPAL 840

Query: 841  PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
            P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841  PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900

Query: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
            DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES  VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901  DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960

Query: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
            DVARRCYDCDMEVEGFEDYVEDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961  DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020

Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
            FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG YNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGYYNE 1080

Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
            GMKRD+YLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFG+VLNLGGS
Sbjct: 1081 GMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGGS 1129

[Close]

BLAST of Cucsa.143710 vs. NCBI nr
Match: gi|700195584|gb|KGN50761.1| (hypothetical protein Csa_5G239140 [Cucumis sativus])

HSP 1 Score: 1791.5 bits (4639), Expect = 0.0e+00
Identity = 882/882 (100.00%), Postives = 882/882 (100.00%), Query Frame = 1


Query: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
           MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1   MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
           LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61  LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120

Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
           VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180

Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
           KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240

Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
           NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300

Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
           DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360

Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
           DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420

Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
           RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480

Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
           IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540

Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
           GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600

Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
           LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660

Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
           SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720

Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
           TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780

Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
           VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840

Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF 883
           PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF
Sbjct: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELF 882

[Close]

BLAST of Cucsa.143710 vs. NCBI nr
Match: gi|700195584|gb|KGN50761.1| (hypothetical protein Csa_5G239140 [Cucumis sativus])

HSP 1 Score: 530.0 bits (1364), Expect = 1.0e-146
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1


Query: 875  AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES 934
            AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES
Sbjct: 917  AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES 976

Query: 935  NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL 994
            NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL
Sbjct: 977  NKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKL 1036

Query: 995  GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN 1054
            GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN
Sbjct: 1037 GNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSN 1096

Query: 1055 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR 1114
            SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR
Sbjct: 1097 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAAR 1156

Query: 1115 LASFDRFGHVLNLGGS 1131
            LASFDRFGHVLNLGGS
Sbjct: 1157 LASFDRFGHVLNLGGS 1172

HSP 2 Score: 1577.0 bits (4082), Expect = 0.0e+00
Identity = 789/1126 (70.07%), Postives = 925/1126 (82.15%), Query Frame = 1


Query: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
            MG+TI +SGFPS V+A+ VK FLE  TG GTVYAIK+R  K GG R YAIVQFTS   AE
Sbjct: 1    MGRTIQVSGFPSSVSAELVKKFLENLTGEGTVYAIKLRKFKNGG-RYYAIVQFTSTRDAE 60

Query: 61   LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
             IISLA  RLWYG+SYL AR+ + DIV KPRTY+++LE + L FGCQ+S EKF VLW+  
Sbjct: 61   FIISLAGARLWYGTSYLTARSMDTDIVAKPRTYLHSLENITLHFGCQISKEKFSVLWKRE 120

Query: 121  VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
               V FGIG+R+++FH  Y+ VEY+L+LSYE IWQI+LH P  Q++KYLLIQL GAPRIY
Sbjct: 121  NVSVDFGIGLRRLHFHFMYQYVEYKLQLSYENIWQIELHRPLGQTVKYLLIQLYGAPRIY 180

Query: 181  KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
            +K  P+SG ++++P+ NFFK+  DDQWVR TDFT SC IGQSS+LCL+LP+G +LP FK+
Sbjct: 181  EKDVPSSGDVYEDPIFNFFKDTPDDQWVRATDFTPSCRIGQSSALCLELPSGPRLPNFKE 240

Query: 241  NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINALVQYGCIPWPL 300
            NFAYY+E E  F L +    FS    L PIV     V LPY I+FKINAL+Q GC+  P 
Sbjct: 241  NFAYYKESEGRFSL-ETGFPFSCNLYLVPIVGPPLDVHLPYDIIFKINALLQQGCLTGPS 300

Query: 301  LDASFYRLVE--RIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSP 360
            LDA+FYRLV+  RI    +  +EHAL+KL++LKEC Y+PS +L EQYRKY  S+ PP SP
Sbjct: 301  LDAAFYRLVDPRRI---NVACIEHALDKLYNLKECCYEPSTWLNEQYRKYFKSKRPPKSP 360

Query: 361  VISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS 420
            +ISLD GLVYVRRVQITPCKV+F GPE+NVSNRVLRH+  +IDNFLRVSFVDEE DKM S
Sbjct: 361  MISLDAGLVYVRRVQITPCKVYFFGPEINVSNRVLRHYPNHIDNFLRVSFVDEELDKMYS 420

Query: 421  TDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 480
            TDL PR S+     KT +Y+R+LSVL++GI+IG+K F+FLAFSSSQLRDNS WMFA    
Sbjct: 421  TDLSPRNSAT----KTGLYKRVLSVLRDGIIIGNKKFEFLAFSSSQLRDNSTWMFAPSDG 480

Query: 481  IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 540
            I AA IR WMGDFR I+N AKYAARLGQSFGSSTE LSV+ +E E IPDIEV  G +KY 
Sbjct: 481  ITAADIREWMGDFRQIRNVAKYAARLGQSFGSSTETLSVSRHEVEKIPDIEVVYGGVKYA 540

Query: 541  FSDGIGKISSKFAKEVAAKCGFQAV-PSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKF 600
            FSDGIGKISS+FA++VA+KCG   V PSAFQIRYGGYKGVVAVDP S+ KLSLRKSMCK+
Sbjct: 541  FSDGIGKISSEFARKVASKCGCNGVTPSAFQIRYGGYKGVVAVDPTSSFKLSLRKSMCKY 600

Query: 601  ESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQ 660
            ESDN KLDVL +SK+QPCFLNRQLI+L+STLGV D++F KKQS+AV+QLDAILTDPL+AQ
Sbjct: 601  ESDNIKLDVLAYSKFQPCFLNRQLISLLSTLGVEDQVFLKKQSKAVQQLDAILTDPLRAQ 660

Query: 661  EALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAM 720
            EAL+LMSPGENTN+LKE+L CGY+PD EPYLSMMLQTFRASKLLELRTKSRIFIP+GRAM
Sbjct: 661  EALDLMSPGENTNVLKELLMCGYKPDTEPYLSMMLQTFRASKLLELRTKSRIFIPDGRAM 720

Query: 721  MGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGD 780
            MGCLDETRTLEYGQVFVQ S  R+R   +S      G +   ++ G+V VAKNPCLHPGD
Sbjct: 721  MGCLDETRTLEYGQVFVQFSGSRYRQFGDSPMLGGNGTKQRFIVTGSVVVAKNPCLHPGD 780

Query: 781  VRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPM 840
            VRVL+AVN+  L+HMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD ELIP  QI PM
Sbjct: 781  VRVLRAVNVSELHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPCHQIEPM 840

Query: 841  DYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAK 900
            DYTPAP    D DVT E++QEYF NY+VNDSLGIIANAHT FADKE  KA SSPC+ELA+
Sbjct: 841  DYTPAPSMLKDDDVTIEEVQEYFANYIVNDSLGIIANAHTVFADKEYGKAMSSPCVELAR 900

Query: 901  LFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSH 960
            LFS+AVDFPKTG+PA+IP HL+VKE+PDFMEKPD+ +YES  VIGKLFR VKDIAP  S 
Sbjct: 901  LFSIAVDFPKTGIPAVIPPHLHVKEYPDFMEKPDKQTYESQNVIGKLFREVKDIAPNTSS 960

Query: 961  IRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSI 1020
            IRSFT +VAR+ YD DMEV+GFEDY++DA+Y+K++YDYKLGNLLDYYGIK+EAE+LSGSI
Sbjct: 961  IRSFTSEVARKSYDPDMEVDGFEDYLDDAYYYKNSYDYKLGNLLDYYGIKTEAEILSGSI 1020

Query: 1021 MRMSKSFTRRRDAEAINLAVRSLRKEARTWFN-AREGADSNSDDLFAKASAWYYVTYHHS 1080
            +RMSKSFT+RRDAE+IN+AVR+LRKEAR WFN  R G D  SDDL+AKASAWY+VTYH S
Sbjct: 1021 LRMSKSFTKRRDAESINMAVRALRKEARNWFNEKRSGGDFESDDLYAKASAWYHVTYHPS 1080

Query: 1081 YWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFD 1120
            YWG YNEGM RDHYLSF WCVYD+L++IKE+   RR R  +L+S +
Sbjct: 1081 YWGSYNEGMNRDHYLSFAWCVYDRLVEIKEDKASRR-RHLQLSSLE 1116

The following BLAST results are available for this feature:

BLAST of Cucsa.143710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RDR1_ARATH	0.0e+00	63.72	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1	[more]
RDR1_ORYSJ	2.3e-276	64.03	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 ...	[more]
RDR2_ARATH	3.7e-218	40.35	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1	[more]
RDR2_ORYSJ	2.0e-208	39.03	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 ...	[more]
SHL2_ORYSJ	5.8e-155	37.26	Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SH...	[more]

BLAST of Cucsa.143710 vs. TrEMBL


Match Name	E-value	Identity	Description
E9NWK6_CUCSA	0.0e+00	100.00	RNA-dependent RNA polymerase 1a OS=Cucumis sativus GN=RDR1a PE=2 SV=1	[more]
A0A0S1YD00_CUCME	0.0e+00	93.89	RNA-dependent RNA polymerase 1a OS=Cucumis melo GN=RDR1a PE=2 SV=1	[more]
A0A0A0KSM9_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G239140 PE=4 SV=1	[more]
A0A0A0KSM9_CUCSA	7.0e-147	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G239140 PE=4 SV=1	[more]
W9RFK1_9ROSA	0.0e+00	67.43	RNA-dependent RNA polymerase 1 OS=Morus notabilis GN=L484_006779 PE=4 SV=1	[more]

BLAST of Cucsa.143710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	63.72	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	2.1e-219	40.35	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	4.3e-156	36.09	RNA-dependent RNA polymerase 6	[more]
AT2G19910.1	1.3e-24	27.32	RNA-dependent RNA polymerase family protein	[more]
AT2G19930.1	3.9e-24	25.23	RNA-dependent RNA polymerase family protein	[more]

BLAST of Cucsa.143710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|525507304\|ref\|NP_001267692.1\|	0.0e+00	100.00	RNA-dependent RNA polymerase 1-like [Cucumis sativus]	[more]
gi\|659130594\|ref\|XP_008465250.1\|	0.0e+00	94.15	PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo]	[more]
gi\|948561981\|gb\|ALM88236.1\|	0.0e+00	93.89	RNA-dependent RNA polymerase 1a [Cucumis melo]	[more]
gi\|700195584\|gb\|KGN50761.1\|	0.0e+00	100.00	hypothetical protein Csa_5G239140 [Cucumis sativus]	[more]
gi\|700195584\|gb\|KGN50761.1\|	1.0e-146	100.00	hypothetical protein Csa_5G239140 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR007855	RNA-dep_RNA_pol_euk-typ
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003968	RNA-directed RNA polymerase activity
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0010025	wax biosynthetic process
biological_process	GO:0001172	transcription, RNA-templated
biological_process	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process	GO:0009615	response to virus
biological_process	GO:0009617	response to bacterium
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0060148	positive regulation of posttranscriptional gene silencing
biological_process	GO:0031348	negative regulation of defense response
cellular_component	GO:0031379	RNA-directed RNA polymerase complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003968	RNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.143710.1	Cucsa.143710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 3..89 score: 9
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 17..1120 score:
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 371..945 score: 1.7E
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 3..70 score: 2.
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 3..73 score: 1.2
None	No IPR available	PANTHER	PTHR23079:SF9	RNA-DEPENDENT RNA POLYMERASE 1	coord: 17..1120 score:

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.143710	Melon (DHL92) v3.6.1	cgymedB238
Cucsa.143710	Cucumber (Chinese Long) v3	cgycucB217
Cucsa.143710	Wax gourd	cgywgoB283
Cucsa.143710	Cucurbita maxima (Rimu)	cgycmaB0401
Cucsa.143710	Cucurbita moschata (Rifu)	cgycmoB0401
Cucsa.143710	Wild cucumber (PI 183967)	cgycpiB212
Cucsa.143710	Cucumber (Chinese Long) v2	cgycuB209
Cucsa.143710	Watermelon (97103) v1	cgywmB253
Cucsa.143710	Cucurbita pepo (Zucchini)	cgycpeB0388
Cucsa.143710	Bottle gourd (USVL1VR-Ls)	cgylsiB232