Cucsa.143300 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.143300
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionCytochrome c-type biogenesis protein CcmE
Locationscaffold01079 : 1644373 .. 1645562 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCTTCTCCACGGTGTTCCGTTTGCTCCTCTCACCCGTCTTTGATTTTGATTTTCCGAATCCTTTACCAAAACCCTAAACCCTTTCAAACCCAAATCCAAATTCTGTTTTCAGCCTTCAATCAGTTCTCCAATGGCTACAAATCTTGCTCTCCGACTCCGATCACGCCTCCTTTTGCAATCTTCATCTCGTTTCCGCACCACTTTTCATCAATTTCAATCCCCCCACATCCCCAAATCTTCCCcTCTCATCACCTCTGCACTTTCCGATCTTCGTCGAATTCCCAATAACCCCATCTTCAATCTCTCTGGATTTCGCTTCTTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCACGTCGATATCGGAGCTCGTGCCAGGCAACTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACTTTCAGCTGCATCGCGGGATTTGTCGTCATCGTTCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACACCCACCGATGCGCTGGAGAAATTCTCTGCGAATCCCTCAAAGAACAAGTTTCGTCTCGGTGGTTTGGTACTTGAAGGCAGTGTAACGCATCCAGCATCGTCTTCTCAGATGGAGTTTGTGATAACGGATTTGATTACTGATATGTTGGTTCGACATCAAGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCGGTGGTGGTGGAAGGTTTCCTTAAGCCATTTACCGATGAGATAAGGAATGAGATCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGAGAAATATTATTTTTCGGCTATTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCGGCGGAGGTTGCGGCGGCAATAGAGAAGAACAGGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCTTGATTCAATGGGTACAATTGTTCTAAATTATTTTTTCCCCCTGATATTTGTTTCAGTATACATACAACAATATCTTTGGAGAACATGATGAATTGTTGTACTCTATAGTTAGAACTTGCTTAATCAAAATTCTTGTGAGGTAGTATATCCTTTGGGTAGGGTGAGAGCAATTGATTTTGTTTGAATTTGAGGCATCTGGTCTGACCTACATCTCAATTTTTCCTTGTAATACCAAAATCTTTGGAGATTCCTTATAACATTGAATAAAATGAAATTACTG

mRNA sequence

GTCTCTTCTCCACGGTGTTCCGTTTGCTCCTCTCACCCGTCTTTGATTTTGATTTTCCGAATCCTTTACCAAAACCCTAAACCCTTTCAAACCCAAATCCAAATTCTGTTTTCAGCCTTCAATCAGTTCTCCAATGGCTACAAATCTTGCTCTCCGACTCCGATCACGCCTCCTTTTGCAATCTTCATCTCGTTTCCGCACCACTTTTCATCAATTTCAATCCCCCCACATCCCCAAATCTTCCCCTCTCATCACCTCTGCACTTTCCGATCTTCGTCGAATTCCCAATAACCCCATCTTCAATCTCTCTGGATTTCGCTTCTTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCACGTCGATATCGGAGCTCGTGCCAGGCAACTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACTTTCAGCTGCATCGCGGGATTTGTCGTCATCGTTCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACACCCACCGATGCGCTGGAGAAATTCTCTGCGAATCCCTCAAAGAACAAGTTTCGTCTCGGTGGTTTGGTACTTGAAGGCAGTGTAACGCATCCAGCATCGTCTTCTCAGATGGAGTTTGTGATAACGGATTTGATTACTGATATGTTGGTTCGACATCAAGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCGGTGGTGGTGGAAGGTTTCCTTAAGCCATTTACCGATGAGATAAGGAATGAGATCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGAGAAATATTATTTTTCGGCTATTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCGGCGGAGGTTGCGGCGGCAATAGAGAAGAACAGGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCTTGATTCAATGGGTACAATTGTTCTAAATTATTTTTTCCCCCTGATATTTGTTTCAGTATACATACAACAATATCTTTGGAGAACATGATGAATTGTTGTACTCTATAGTTAGAACTTGCTTAATCAAAATTCTTGTGAGGTAGTATATCCTTTGGGTAGGGTGAGAGCAATTGATTTTGTTTGAATTTGAGGCATCTGGTCTGACCTACATCTCAATTTTTCCTTGTAATACCAAAATCTTTGGAGATTCCTTATAACATTGAATAAAATGAAATTACTG

Coding sequence (CDS)

ATGGCTACAAATCTTGCTCTCCGACTCCGATCACGCCTCCTTTTGCAATCTTCATCTCGTTTCCGCACCACTTTTCATCAATTTCAATCCCCCCACATCCCCAAATCTTCCCcTCTCATCACCTCTGCACTTTCCGATCTTCGTCGAATTCCCAATAACCCCATCTTCAATCTCTCTGGATTTCGCTTCTTCTCAACTGCACGGCGGAATCTGACCCGTCCCAAGCACGTCGATATCGGAGCTCGTGCCAGGCAACTCCAGACGCGGCGGCTCTGGACCTACGCTCTGACTTTCAGCTGCATCGCGGGATTTGTCGTCATCGTTCTCAGTAATTTTCAAGAGCATCTGATGTTCTATGTGACACCCACCGATGCGCTGGAGAAATTCTCTGCGAATCCCTCAAAGAACAAGTTTCGTCTCGGTGGTTTGGTACTTGAAGGCAGTGTAACGCATCCAGCATCGTCTTCTCAGATGGAGTTTGTGATAACGGATTTGATTACTGATATGTTGGTTCGACATCAAGGGTCGTTGCCGGATTTGTTTAGAGAGGGGCATTCGGTGGTGGTGGAAGGTTTCCTTAAGCCATTTACCGATGAGATAAGGAATGAGATCTCTACGAAGAGTGTTTCGGGAAAAGCGAGAAGTGAGAAATATTATTTTTCGGCTATTGAGGTTTTGGCAAAGCATGATGAGAAGTATATGCCGGCGGAGGTTGCGGCGGCAATAGAGAAGAACAGGAAGAAGATCGAGGAAGGAGAATTGGGGGTGAACCACGCTTGA

Protein sequence

MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSGFRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRKKIEEGELGVNHA*
Homology
[Close]
BLAST of Cucsa.143300 vs. Swiss-Prot
Match: CCME_AROAE (Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.3e-19
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 1 

Query: 87  QTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLE 146
           +++RL   A   + + G V +VL+ FQ++L+F+ TPT+  E     P    FR+GG+V  
Sbjct: 4   RSKRLLLVAGAVALLVGAVALVLNAFQQNLVFFHTPTEVAE--GKAPVGRAFRIGGMVET 63

Query: 147 GSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEIST 206
           GS+   A    ++F ITD    + V ++GSLPDLF EG   VV+G L P           
Sbjct: 64  GSIRRAADGVTVQFAITDTAKVIPVSYKGSLPDLFSEGKGAVVQGTLGP----------- 123

Query: 207 KSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRK 248
               G+       F A EVLAKHDE YMP E   A+++ +K
Sbjct: 124 ---DGQ-------FQASEVLAKHDENYMPPEAQHAVDQAQK 141

[Close]
BLAST of Cucsa.143300 vs. Swiss-Prot
Match: CCME_RHORT (Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-18
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 1 

Query: 89  RRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLEGS 148
           RRL+   L    +     + L+ FQ++L+F+ +PTD  EK        +FR+GGLV EGS
Sbjct: 6   RRLYFVVLGMLALFAAAGLTLTAFQDNLVFFYSPTDLQEK--GVDQGRRFRVGGLVEEGS 65

Query: 149 VTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEISTKS 208
           V     +  + F++TDL+  + VR+ G LPDLFREG  VV EG                 
Sbjct: 66  VVRDGET--VRFIVTDLMNTVTVRYTGMLPDLFREGQGVVAEG----------------- 125

Query: 209 VSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRK 248
               A      F A  VLAKHDE YMP EVA +++ + K
Sbjct: 126 ----AMDGAGTFVAASVLAKHDENYMPPEVAESLKASGK 139

[Close]
BLAST of Cucsa.143300 vs. Swiss-Prot
Match: CCME_HALHL (Cytochrome c-type biogenesis protein CcmE OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-18
Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 1 

Query: 96  LTFSCIAGFVV---IVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLEGSVTHP 155
           L    +AG  V   +VL+ F++++ F++TP++ + K S  P ++ FR+GGLV +GSV   
Sbjct: 10  LVLGVVAGVSVATALVLNAFRDNMTFFITPSEVMAK-SDMPERH-FRIGGLVEDGSVERD 69

Query: 156 ASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEISTKSVSGK 215
           + S+Q+ F +TD    + V  +G LPDLFREG  VVVEG            I++  V   
Sbjct: 70  SDSTQVRFRVTDTEASVPVDFEGILPDLFREGQGVVVEG-----------RITSNGV--- 129

Query: 216 ARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRKKIEE 252
                  F A  V+A+HDE YMPAE   A+++    ++E
Sbjct: 130 -------FKADNVMARHDEDYMPAEAQEALDRVEHSVDE 145

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BLAST of Cucsa.143300 vs. Swiss-Prot
Match: CCME_AZOSB (Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) GN=ccmE PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.7e-18
Identity = 59/161 (36.65%), Postives = 82/161 (50.93%), Query Frame = 1 

Query: 87  QTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLE 146
           + +RL       + +     +VLS FQ++L+F+ TP++  E     P    FR+GG+V  
Sbjct: 4   RNKRLMLVGGGIALLVAAAALVLSAFQQNLVFFHTPSEVAE--GKAPVGKTFRVGGMVET 63

Query: 147 GSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEIST 206
           GS+   A    + FVITD    + V ++GSLPDLF+EG   VV+G              T
Sbjct: 64  GSIQRDADGVTVRFVITDTAKVIPVSYRGSLPDLFKEGKGAVVQG--------------T 123

Query: 207 KSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRK 248
               G+       F A EVLAKHDE YMP E A A+E+  K
Sbjct: 124 LGADGQ-------FRATEVLAKHDENYMPPEAAHALEQAHK 141

[Close]
BLAST of Cucsa.143300 vs. Swiss-Prot
Match: CCME_NITEU (Cytochrome c-type biogenesis protein CcmE OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=ccmE PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-17
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1 

Query: 89  RRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTDALEKFSANPSKNKFRLGGLVLEGS 148
           +++   AL+ S +   VV+VL+ FQ +L+F+ +P+    K +  P    FR+GGLV EGS
Sbjct: 6   KKMAVIALSVSALTVAVVLVLNAFQSNLVFFFSPSQVAAKEA--PIGKSFRIGGLVEEGS 65

Query: 149 VTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREGHSVVVEGFLKPFTDEIRNEISTKS 208
           +      + + F ITD    + V + G LPDLF+EG  VV +G +               
Sbjct: 66  LKREGDGTTLNFAITDTAEVIRVVYTGILPDLFKEGKGVVAQGKM--------------- 125

Query: 209 VSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEKNRK 248
                 ++   F A EVLAKHDE YMP E A+A+E+  K
Sbjct: 126 ------ADDGIFYADEVLAKHDENYMPPEAASALEQAAK 141

[Close]
BLAST of Cucsa.143300 vs. TrEMBL
Match: A0A0A0M028_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613490 PE=3 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.3e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60
           MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120
           FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180
           TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNRKKIEEGELGVNHA 260
           AIEKNRKKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]
BLAST of Cucsa.143300 vs. TrEMBL
Match: A0A067JPZ7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25901 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.2e-87
Identity = 176/249 (70.68%), Postives = 199/249 (79.92%), Query Frame = 1 

Query: 7   LRLRSRLLLQSSSRFRTTFHQFQSPHIP--KSSPLITSALSDLRRIPNNPIFNLSGFRFF 66
           LRLRS LL  +++   +      SP +   KS  LI S +SDLR I +    +L G RFF
Sbjct: 8   LRLRSHLLRSTTTINASRLFHLNSPILSTIKSERLILSPVSDLRTI-STEFPSLFGPRFF 67

Query: 67  STARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTD 126
           ST RR  TR K VDIGARARQLQTRRLWTYALTFSCIAGF+VIVL+NFQ+ L+FYVTPTD
Sbjct: 68  STVRRQPTRSKTVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPTD 127

Query: 127 ALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREG 186
           A+EK+  NP KNKFRLGGLVLEGSV  PASS +MEFVITDLITD+LVR+QGSLPDLFREG
Sbjct: 128 AMEKYKENPQKNKFRLGGLVLEGSVVQPASSPEMEFVITDLITDILVRYQGSLPDLFREG 187

Query: 187 HSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEK 246
           HSVVVEGF+KPFT+E++ E+  KSVSGKARS   YFSA EVLAKHDEKYMP EVAAAIEK
Sbjct: 188 HSVVVEGFVKPFTEELKKEVGAKSVSGKARSIDCYFSATEVLAKHDEKYMPKEVAAAIEK 247

Query: 247 NRKKIEEGE 254
           N+K IE GE
Sbjct: 248 NKKLIEAGE 255

[Close]
BLAST of Cucsa.143300 vs. TrEMBL
Match: A0A061EQL1_THECC (Transmembrane protein G1P-related 1 OS=Theobroma cacao GN=TCM_021638 PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 2.1e-86
Identity = 178/261 (68.20%), Postives = 200/261 (76.63%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIP--KSSPLITSALSDLRRIPNNPIFNL 60
           MA  LAL  RS LL           H  + P +   KS PLI S L+ +     +  F  
Sbjct: 1   MAARLALHFRSHLL--------RNLHNQKPPTLATLKSQPLI-SQLAPVPITTVDHFFTS 60

Query: 61  SGFRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMF 120
              RF ST+RR  TRPK VDIGARARQLQTRRLWTYALTFSCIAGFVV+VL+NFQE L+F
Sbjct: 61  PTLRFLSTSRRIPTRPKKVDIGARARQLQTRRLWTYALTFSCIAGFVVLVLNNFQEQLVF 120

Query: 121 YVTPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLP 180
           YVTPTDALEK++ NPSK KFRLGGLVLEGSV  P SS +MEFVITDLITD+LVR++GSLP
Sbjct: 121 YVTPTDALEKYTQNPSKTKFRLGGLVLEGSVVQPGSSKEMEFVITDLITDILVRYEGSLP 180

Query: 181 DLFREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEV 240
           DLFREGHSVVVEGF+KPFT+E + E+S+KSVSGKARS   YFSA EVLAKHDEKYMPAEV
Sbjct: 181 DLFREGHSVVVEGFVKPFTEETKREVSSKSVSGKARSGDCYFSATEVLAKHDEKYMPAEV 240

Query: 241 AAAIEKNRKKIEEGELGVNHA 260
           AAAIEKN+KKIEEG  G   +
Sbjct: 241 AAAIEKNKKKIEEGLEGTKES 252

[Close]
BLAST of Cucsa.143300 vs. TrEMBL
Match: A0A059D9P8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03679 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.7e-86
Identity = 172/257 (66.93%), Postives = 203/257 (78.99%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSS----PLITSALSDLRRIPNNPIF 60
           MA+  ALRLR  L   +++           P  P S+    P + S +S L  +P +   
Sbjct: 1   MASRFALRLRPHLGRAAAAA------ALPRPAAPTSALGSPPPLLSPISGLYALPRDCPS 60

Query: 61  NLSGFRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHL 120
           +++  RF ST+RR   RPKHVDIGARARQLQ RRLWTYALTFSCIAGF+VIVL+ FQ+ L
Sbjct: 61  SIAALRFLSTSRRVPARPKHVDIGARARQLQNRRLWTYALTFSCIAGFIVIVLNQFQDQL 120

Query: 121 MFYVTPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGS 180
           +FYVTP+DA+EK+SANP+KNKFRLGGLVLEGSV  PASS+ MEFVITDLITD+LVR+QGS
Sbjct: 121 VFYVTPSDAMEKYSANPTKNKFRLGGLVLEGSVAQPASSAVMEFVITDLITDILVRYQGS 180

Query: 181 LPDLFREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPA 240
           LPDLFREGHSVVVEGF+KPF+DEIR E+S+KSVSGKARS + YF+A EVLAKHDEKYMP 
Sbjct: 181 LPDLFREGHSVVVEGFVKPFSDEIRKEVSSKSVSGKARSAECYFAATEVLAKHDEKYMPQ 240

Query: 241 EVAAAIEKNRKKIEEGE 254
           EVAAAIEKN+K IE GE
Sbjct: 241 EVAAAIEKNKKMIEAGE 251

[Close]
BLAST of Cucsa.143300 vs. TrEMBL
Match: V4SUM7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012386mg PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 6.0e-86
Identity = 175/265 (66.04%), Postives = 207/265 (78.11%), Query Frame = 1 

Query: 1   MATNLALRLRSRLL--LQSSSRF-RTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFN 60
           MAT L   LRS+ L  ++ + R   TT     +  IPKS   I S LSDLR++P +    
Sbjct: 1   MATRLTHHLRSQFLNAIRHNPRLLSTTSAAAATTSIPKSPVPILSHLSDLRQVPTS---T 60

Query: 61  LSGFRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLM 120
            +  RFFSTARR   RP  VDIGARARQ+Q+RRLWTYALTFSCIAGF+VIVL+NFQ+ L+
Sbjct: 61  TNSIRFFSTARRFPARPNRVDIGARARQMQSRRLWTYALTFSCIAGFIVIVLNNFQDQLV 120

Query: 121 FYVTPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSL 180
           FYVTP++ALEK+ +NPSKNKFRLGGLVLEGSV HPASSS+MEFV+TDL+TD+LVR+QGSL
Sbjct: 121 FYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYQGSL 180

Query: 181 PDLFREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAE 240
           PDLFREGHSVVVEGF+KP T+EI+N  S KSVS  ARS   +FSA +VLAKHDEKYMP E
Sbjct: 181 PDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQE 240

Query: 241 VAAAIEKNRKKIE-----EGELGVN 258
           VAAAIEKN+K +E     EGEL +N
Sbjct: 241 VAAAIEKNKKMLEEQQQQEGELKIN 262

[Close]
BLAST of Cucsa.143300 vs. TAIR10
Match: AT3G51790.1 (AT3G51790.1 transmembrane protein G1P-related 1)

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-82
Identity = 160/250 (64.00%), Postives = 192/250 (76.80%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60
           MA  L  R RS  +L+S  R       F+SP  P    L T++    R      + +L+ 
Sbjct: 1   MAARLLFR-RSSQILRSIQRNPQISSSFESPPCPIFHSLTTASPDPSR------LSSLTF 60

Query: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120
            R  S ARR  TRPK +DIGA+ARQ+Q RRLWTYALTFSCIAGFVVIVL+ FQ+ L+FY+
Sbjct: 61  LRSLSIARRGPTRPKKIDIGAKARQMQNRRLWTYALTFSCIAGFVVIVLNQFQDQLVFYL 120

Query: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180
           TP+DA+EKF+ NP+KNKFRLGGLVLEGSV  PA+S +MEFVITDLITD+LVR++GSLPDL
Sbjct: 121 TPSDAMEKFAENPTKNKFRLGGLVLEGSVAQPAASQEMEFVITDLITDILVRYKGSLPDL 180

Query: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KP+TDE+R E+STK +S KAR+   +FSA EVLAKHDEKYMP EVAA
Sbjct: 181 FREGHSVVVEGFIKPYTDEVRKEVSTKPISKKARNLDCFFSATEVLAKHDEKYMPQEVAA 240

Query: 241 AIEKNRKKIE 251
           AIEKN+K IE
Sbjct: 241 AIEKNKKIIE 243

[Close]
BLAST of Cucsa.143300 vs. NCBI nr
Match: gi|449442511|ref|XP_004139025.1| (PREDICTED: uncharacterized protein LOC101211081 [Cucumis sativus])

HSP 1 Score: 510.4 bits (1313), Expect = 1.9e-141
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60
           MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG
Sbjct: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60

Query: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120
           FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180
           TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNRKKIEEGELGVNHA 260
           AIEKNRKKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]
BLAST of Cucsa.143300 vs. NCBI nr
Match: gi|659099121|ref|XP_008450439.1| (PREDICTED: uncharacterized protein LOC103492039 [Cucumis melo])

HSP 1 Score: 497.3 bits (1279), Expect = 1.6e-137
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60
           MATNLA RLRSRLLLQSSSRFRTTFHQ QSPHIPKSSPLI+SALSDLRRIP+NPIFNLSG
Sbjct: 1   MATNLAFRLRSRLLLQSSSRFRTTFHQIQSPHIPKSSPLISSALSDLRRIPDNPIFNLSG 60

Query: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120
           FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV
Sbjct: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120

Query: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180
           TPTDALEKFSANP+KNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL
Sbjct: 121 TPTDALEKFSANPAKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180

Query: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGFLKPFTDEIRNEISTKSVS KARSEKYYFSAIEVLAKHDEKYMPAEV A
Sbjct: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSEKARSEKYYFSAIEVLAKHDEKYMPAEVGA 240

Query: 241 AIEKNRKKIEEGELGVNHA 260
           AIEKNRKKIEEGELGVNHA
Sbjct: 241 AIEKNRKKIEEGELGVNHA 259

[Close]
BLAST of Cucsa.143300 vs. NCBI nr
Match: gi|1009124492|ref|XP_015879097.1| (PREDICTED: cytochrome c-type biogenesis protein CcmE-like [Ziziphus jujuba])

HSP 1 Score: 342.0 bits (876), Expect = 8.9e-91
Identity = 189/253 (74.70%), Postives = 207/253 (81.82%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLRRIPNNPIFNLSG 60
           MA  LALRLRS     +++   TT   F    I KS   I S LSD R + ++  F L  
Sbjct: 1   MAARLALRLRSHSFRTTTT---TTTSYFHHRPIVKSPTPILSPLSD-RILQSDLPFTL-- 60

Query: 61  FRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYV 120
            R  STARRN TRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVL+NFQ+ L+FYV
Sbjct: 61  -RLLSTARRNPTRPK-VDIGARARQLQTRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYV 120

Query: 121 TPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDL 180
           TPTDALEK+SANP+K KFRLGGLVLEGSV HPASSS+MEFVITDLITD+LVR+QGSLPDL
Sbjct: 121 TPTDALEKYSANPNKTKFRLGGLVLEGSVVHPASSSEMEFVITDLITDILVRYQGSLPDL 180

Query: 181 FREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAA 240
           FREGHSVVVEGF+KPFTDEIR E+S KSVSGKARS   YFSA EVLAKHDEKYMPAEVAA
Sbjct: 181 FREGHSVVVEGFVKPFTDEIRKEVSAKSVSGKARSGDCYFSATEVLAKHDEKYMPAEVAA 240

Query: 241 AIEKNRKKIEEGE 254
           AIEKN+KKIE GE
Sbjct: 241 AIEKNKKKIEAGE 245

[Close]
BLAST of Cucsa.143300 vs. NCBI nr
Match: gi|802762673|ref|XP_012089970.1| (PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas])

HSP 1 Score: 329.7 bits (844), Expect = 4.6e-87
Identity = 176/249 (70.68%), Postives = 199/249 (79.92%), Query Frame = 1 

Query: 7   LRLRSRLLLQSSSRFRTTFHQFQSPHIP--KSSPLITSALSDLRRIPNNPIFNLSGFRFF 66
           LRLRS LL  +++   +      SP +   KS  LI S +SDLR I +    +L G RFF
Sbjct: 8   LRLRSHLLRSTTTINASRLFHLNSPILSTIKSERLILSPVSDLRTI-STEFPSLFGPRFF 67

Query: 67  STARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFYVTPTD 126
           ST RR  TR K VDIGARARQLQTRRLWTYALTFSCIAGF+VIVL+NFQ+ L+FYVTPTD
Sbjct: 68  STVRRQPTRSKTVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPTD 127

Query: 127 ALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPDLFREG 186
           A+EK+  NP KNKFRLGGLVLEGSV  PASS +MEFVITDLITD+LVR+QGSLPDLFREG
Sbjct: 128 AMEKYKENPQKNKFRLGGLVLEGSVVQPASSPEMEFVITDLITDILVRYQGSLPDLFREG 187

Query: 187 HSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVAAAIEK 246
           HSVVVEGF+KPFT+E++ E+  KSVSGKARS   YFSA EVLAKHDEKYMP EVAAAIEK
Sbjct: 188 HSVVVEGFVKPFTEELKKEVGAKSVSGKARSIDCYFSATEVLAKHDEKYMPKEVAAAIEK 247

Query: 247 NRKKIEEGE 254
           N+K IE GE
Sbjct: 248 NKKLIEAGE 255

[Close]
BLAST of Cucsa.143300 vs. NCBI nr
Match: gi|694402324|ref|XP_009376163.1| (PREDICTED: uncharacterized protein LOC103964892 [Pyrus x bretschneideri])

HSP 1 Score: 328.9 bits (842), Expect = 7.8e-87
Identity = 178/256 (69.53%), Postives = 206/256 (80.47%), Query Frame = 1 

Query: 1   MATNLALRLRSRLLLQSSSRFRTTFHQFQSPHIPKSSPLITSALSDLR-RIPNNPIFNLS 60
           MAT +ALRL+S LL       RTT      P + KS P I S LS      P+NP    +
Sbjct: 1   MATRIALRLKSHLL-------RTTTPIHHHP-VFKSPPSIFSLLSTPHLHPPSNPHLPFT 60

Query: 61  GFRFFSTARRNLTRPKHVDIGARARQLQTRRLWTYALTFSCIAGFVVIVLSNFQEHLMFY 120
             RF STARR  TRPK VDIGARARQLQTRRLWTYALTFSCIAGF+VIVL++FQ+ L+FY
Sbjct: 61  -LRFLSTARRGPTRPKPVDIGARARQLQTRRLWTYALTFSCIAGFIVIVLNSFQDQLVFY 120

Query: 121 VTPTDALEKFSANPSKNKFRLGGLVLEGSVTHPASSSQMEFVITDLITDMLVRHQGSLPD 180
           VTPTDA+EK+SANPSK+KFR+GGLVLEGSV  P+SS +MEFV+TDL+TD+LVR++GSLPD
Sbjct: 121 VTPTDAIEKYSANPSKSKFRVGGLVLEGSVVQPSSSPEMEFVVTDLMTDILVRYKGSLPD 180

Query: 181 LFREGHSVVVEGFLKPFTDEIRNEISTKSVSGKARSEKYYFSAIEVLAKHDEKYMPAEVA 240
           LFREGHSVVVEGF+KPFT+EIR EISTKS+S KARS + YF+A EVLAKHDEKYMP EVA
Sbjct: 181 LFREGHSVVVEGFVKPFTEEIRREISTKSISEKARSGECYFAATEVLAKHDEKYMPGEVA 240

Query: 241 AAIEKNRKKIEEGELG 256
           AAIEKN+KK+EE   G
Sbjct: 241 AAIEKNKKKLEEAGAG 247

The following BLAST results are available for this feature:
BLAST of Cucsa.143300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CCME_AROAE5.3e-1937.27Cytochrome c-type biogenesis protein CcmE OS=Aromatoleum aromaticum (strain EbN1... [more]
CCME_RHORT2.6e-1837.74Cytochrome c-type biogenesis protein CcmE OS=Rhodospirillum rubrum (strain ATCC ... [more]
CCME_HALHL7.7e-1836.48Cytochrome c-type biogenesis protein CcmE OS=Halorhodospira halophila (strain DS... [more]
CCME_AZOSB7.7e-1836.65Cytochrome c-type biogenesis protein CcmE OS=Azoarcus sp. (strain BH72) GN=ccmE ... [more]
CCME_NITEU1.0e-1735.85Cytochrome c-type biogenesis protein CcmE OS=Nitrosomonas europaea (strain ATCC ... [more]
BLAST of Cucsa.143300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M028_CUCSA1.3e-141100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613490 PE=3 SV=1[more]
A0A067JPZ7_JATCU3.2e-8770.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25901 PE=3 SV=1[more]
A0A061EQL1_THECC2.1e-8668.20Transmembrane protein G1P-related 1 OS=Theobroma cacao GN=TCM_021638 PE=3 SV=1[more]
A0A059D9P8_EUCGR2.7e-8666.93Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03679 PE=3 SV=1[more]
V4SUM7_9ROSI6.0e-8666.04Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012386mg PE=3 SV=1[more]
BLAST of Cucsa.143300 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G51790.12.1e-8264.00 transmembrane protein G1P-related 1[more]
BLAST of Cucsa.143300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442511|ref|XP_004139025.1|1.9e-141100.00PREDICTED: uncharacterized protein LOC101211081 [Cucumis sativus][more]
gi|659099121|ref|XP_008450439.1|1.6e-13797.30PREDICTED: uncharacterized protein LOC103492039 [Cucumis melo][more]
gi|1009124492|ref|XP_015879097.1|8.9e-9174.70PREDICTED: cytochrome c-type biogenesis protein CcmE-like [Ziziphus jujuba][more]
gi|802762673|ref|XP_012089970.1|4.6e-8770.68PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas][more]
gi|694402324|ref|XP_009376163.1|7.8e-8769.53PREDICTED: uncharacterized protein LOC103964892 [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004329CcmE
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
Vocabulary: Biological Process
TermDefinition
GO:0017003protein-heme linkage
GO:0017004cytochrome complex assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018063 cytochrome c-heme linkage
biological_process GO:0017004 cytochrome complex assembly
biological_process GO:0017003 protein-heme linkage
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0020037 heme binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.143300.1Cucsa.143300.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004329CcmE/CycJ proteinHAMAPMF_01959CcmEcoord: 84..246
score: 24
IPR004329CcmE/CycJ proteinPFAMPF03100CcmEcoord: 87..235
score: 2.0
IPR004329CcmE/CycJ proteinunknownSSF82093Heme chaperone CcmEcoord: 112..241
score: 3.14
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 108..230
score: 2.3
NoneNo IPR availablePANTHERPTHR34128FAMILY NOT NAMEDcoord: 14..253
score: 4.9E
NoneNo IPR availablePANTHERPTHR34128:SF2SUBFAMILY NOT NAMEDcoord: 14..253
score: 4.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.143300Cla006292Watermelon (97103) v1cgywmB251
Cucsa.143300Csa1G613490Cucumber (Chinese Long) v2cgycuB205
Cucsa.143300MELO3C015204Melon (DHL92) v3.5.1cgymeB238
Cucsa.143300ClCG03G013350Watermelon (Charleston Gray)cgywcgB242
Cucsa.143300CSPI01G30270Wild cucumber (PI 183967)cgycpiB208
Cucsa.143300CmaCh10G009390Cucurbita maxima (Rimu)cgycmaB0395
Cucsa.143300CmoCh10G009840Cucurbita moschata (Rifu)cgycmoB0395
Cucsa.143300Lsi06G005170Bottle gourd (USVL1VR-Ls)cgylsiB230
Cucsa.143300Cp4.1LG18g01530Cucurbita pepo (Zucchini)cgycpeB0382
Cucsa.143300MELO3C015204.2Melon (DHL92) v3.6.1cgymedB235
Cucsa.143300CsaV3_1G042700Cucumber (Chinese Long) v3cgycucB213
Cucsa.143300Cla97C03G063550Watermelon (97103) v2cgywmbB241
Cucsa.143300Bhi02G001345Wax gourdcgywgoB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.143300Wax gourdcgywgoB277
Cucsa.143300Wax gourdcgywgoB278
Cucsa.143300Wax gourdcgywgoB282
Cucsa.143300Cucumber (Gy14) v1cgycgyB010
Cucsa.143300Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.143300Cucurbita maxima (Rimu)cgycmaB0397
Cucsa.143300Cucurbita maxima (Rimu)cgycmaB0398
Cucsa.143300Cucurbita maxima (Rimu)cgycmaB0399
Cucsa.143300Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.143300Cucurbita moschata (Rifu)cgycmoB0397
Cucsa.143300Cucurbita moschata (Rifu)cgycmoB0398
Cucsa.143300Cucurbita moschata (Rifu)cgycmoB0399
Cucsa.143300Wild cucumber (PI 183967)cgycpiB211
Cucsa.143300Cucumber (Chinese Long) v2cgycuB208
Cucsa.143300Melon (DHL92) v3.5.1cgymeB237
Cucsa.143300Melon (DHL92) v3.5.1cgymeB239
Cucsa.143300Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.143300Cucurbita pepo (Zucchini)cgycpeB0386
Cucsa.143300Bottle gourd (USVL1VR-Ls)cgylsiB228
Cucsa.143300Melon (DHL92) v3.6.1cgymedB234
Cucsa.143300Silver-seed gourdcarcgyB0212
Cucsa.143300Silver-seed gourdcarcgyB0539
Cucsa.143300Silver-seed gourdcarcgyB0599
Cucsa.143300Silver-seed gourdcarcgyB1039
Cucsa.143300Cucumber (Chinese Long) v3cgycucB216