Cucsa.143270 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.143270
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold01079 : 1612596 .. 1612868 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATGGTGGAGGAGGAGACTTATAAACATATGGTGGaGGTGGAGATGGTGATGGTGGTGGTGgTGATTtATAAAtGTATGGAGGTGGCGGTGATGGAGAAGGTGGAGGAGGTGAGCTATAGACATAAGGGGgAGGTGGTGGAGATTTGTAATAATAAGGTGATGGCGGTGGTGGAGACTTCAATGGCGGTGGTGGTGAACTATAATAATAAGGGGATGGTGGCGGTGGTGATGCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

mRNA sequence

atggtgatggtgGAGGAGGAGACTTATAAACATAtggtggaggtggagatggtgatggtggtggtggtgATTTATAAATGTAtggaggtggcggtgatggagaaggtggaggaggtgagctatagacataagggggaggtggtggagatttgtaataataaggtgatggcggtggtggagacttcaatggcggtggtggtgaactataataataaggggatggtggcggtggtgatgCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

Coding sequence (CDS)

ATGGTGATGGTGGAGGAGGAGACTTATAAACATATGGTGGaGGTGGAGATGGTGATGGTGGTGGTGgTGATTtATAAAtGTATGGAGGTGGCGGTGATGGAGAAGGTGGAGGAGGTGAGCTATAGACATAAGGGGgAGGTGGTGGAGATTTGTAATAATAAGGTGATGGCGGTGGTGGAGACTTCAATGGCGGTGGTGGTGAACTATAATAATAAGGGGATGGTGGCGGTGGTGATGCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

Protein sequence

MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVETSMAVVVNYNNKGMVAVVMHKHKGFFQPQL*
Homology
[Close]
BLAST of Cucsa.143270 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 417 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 476

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 477 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 506

[Close]
BLAST of Cucsa.143270 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVV------EICNNK 60
           M MVEEETYKH   VEM MV    YK  EV  ME VEE   +H+GEVV      EIC ++
Sbjct: 79  MEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVMEMVEEEICKHR 138

Query: 61  VMAVVETSMAVVVNYNNKGMVAVVMHK 82
               VE  M +V     K MVAVVM K
Sbjct: 139 --GEVEEVMEMVEEEICKHMVAVVMVK 163


HSP 2 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHK---------------- 60
           MVMVEEETYKH   VEM MV    YK  EV  ME VEE +Y+HK                
Sbjct: 63  MVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHR 122

Query: 61  GEVV------EICNNKVMAVVETSMAVVVNYNNKGMVAVVMHK 82
           GEVV      EIC ++    VE  M +V     K MVAVVM K
Sbjct: 123 GEVVMEMVEEEICKHR--GEVEEVMEMVEEEICKHMVAVVMVK 163


HSP 3 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 43/93 (46.24%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEIC-----NNKV 60
           M MV  ETY+H   VEM MVV VI K ME AVME VE  +Y+HK EVVE+        K 
Sbjct: 15  MKMVVGETYRHKEVVEMGMVVGVICKYMEEAVMEMVEGETYKHK-EVVEMVMVEEETYKH 74

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM-----HKHK 84
             VVE  M     Y +K +V + M     +KHK
Sbjct: 75  KEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106


HSP 4 Score: 55.1 bits (131), Expect = 5.3e-05
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKG----EVVEICNNKVM 60
           M MVE ETYKH   VEMVMV    YK  EV  ME VEE +Y+HK     E+VE    K  
Sbjct: 47  MEMVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

Query: 61  AVVETSMAVVVNYNNKGMVAVVM-----HKHKG 85
            VVE  M       ++G V + M      KH+G
Sbjct: 107 EVVEMEMVEEEICKHRGEVVMEMVEEEICKHRG 139


HSP 5 Score: 50.1 bits (118), Expect = 1.7e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 161 MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 220

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 221 TEVVEMVMEVEEIYRYTEVVEMVM 243


HSP 6 Score: 35.8 bits (81), Expect = 3.3e+01
Identity = 34/86 (39.53%), Postives = 38/86 (44.19%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEE  KHMV V                VM K EE +YRHK EVVE       IC  
Sbjct: 145 MEMVEEEICKHMVAV----------------VMVKAEEATYRHK-EVVEKVMVGVVIC-- 204

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 205 KHMEEVEMETVGEETYRHTEVVEMVM 211

[Close]
BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|778663622|ref|XP_011660124.1| (PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 316 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 375

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 376 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 405

[Close]
BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|778663622|ref|XP_011660124.1| (PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 41/86 (47.67%), Postives = 45/86 (52.33%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEETYKHM   E VM V  I K M   VM K EE +YRHK EVVE       IC  
Sbjct: 28  MEMVEEETYKHMEVEEKVMAVEEICKHMVAVVMVKAEEATYRHK-EVVEKVMVGVVIC-- 87

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 88  KHMEEVEMETVGEETYRHTEVVEMVM 110


HSP 2 Score: 50.1 bits (118), Expect = 2.4e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 60  MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 119

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 120 TEVVEMVMEVEEIYRYTEVVEMVM 142


HSP 3 Score: 47.4 bits (111), Expect = 1.6e-02
Identity = 33/76 (43.42%), Postives = 40/76 (52.63%), Query Frame = 1 

Query: 16 EMVMVVVVIYKCMEVAVMEKVEEVSYRHKG------EVVEICNNKVMAVVETSMAVVVNY 75
          EMV VVV IYK ME AVME VEE +Y+H         V EIC + V  V+  +      +
Sbjct: 11 EMVKVVVEIYKYMEEAVMEMVEEETYKHMEVEEKVMAVEEICKHMVAVVMVKAEEATYRH 70

Query: 76 N---NKGMVAVVMHKH 83
               K MV VV+ KH
Sbjct: 71 KEVVEKVMVGVVICKH 86


HSP 4 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 417 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 476

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 477 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 506

[Close]
BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|700211378|gb|KGN66474.1| (hypothetical protein Csa_1G613460 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-07
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVV------EICNNK 60
           M MVEEETYKH   VEM MV    YK  EV  ME VEE   +H+GEVV      EIC ++
Sbjct: 79  MEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVMEMVEEEICKHR 138

Query: 61  VMAVVETSMAVVVNYNNKGMVAVVMHK 82
               VE  M +V     K MVAVVM K
Sbjct: 139 --GEVEEVMEMVEEEICKHMVAVVMVK 163


HSP 2 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHK---------------- 60
           MVMVEEETYKH   VEM MV    YK  EV  ME VEE +Y+HK                
Sbjct: 63  MVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHR 122

Query: 61  GEVV------EICNNKVMAVVETSMAVVVNYNNKGMVAVVMHK 82
           GEVV      EIC ++    VE  M +V     K MVAVVM K
Sbjct: 123 GEVVMEMVEEEICKHR--GEVEEVMEMVEEEICKHMVAVVMVK 163


HSP 3 Score: 56.6 bits (135), Expect = 2.6e-05
Identity = 43/93 (46.24%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEIC-----NNKV 60
           M MV  ETY+H   VEM MVV VI K ME AVME VE  +Y+HK EVVE+        K 
Sbjct: 15  MKMVVGETYRHKEVVEMGMVVGVICKYMEEAVMEMVEGETYKHK-EVVEMVMVEEETYKH 74

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM-----HKHK 84
             VVE  M     Y +K +V + M     +KHK
Sbjct: 75  KEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106


HSP 4 Score: 55.1 bits (131), Expect = 7.6e-05
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKG----EVVEICNNKVM 60
           M MVE ETYKH   VEMVMV    YK  EV  ME VEE +Y+HK     E+VE    K  
Sbjct: 47  MEMVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

Query: 61  AVVETSMAVVVNYNNKGMVAVVM-----HKHKG 85
            VVE  M       ++G V + M      KH+G
Sbjct: 107 EVVEMEMVEEEICKHRGEVVMEMVEEEICKHRG 139


HSP 5 Score: 50.1 bits (118), Expect = 2.4e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 161 MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 220

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 221 TEVVEMVMEVEEIYRYTEVVEMVM 243


HSP 6 Score: 35.8 bits (81), Expect = 4.8e+01
Identity = 34/86 (39.53%), Postives = 38/86 (44.19%), Query Frame = 1 

Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEE  KHMV V                VM K EE +YRHK EVVE       IC  
Sbjct: 145 MEMVEEEICKHMVAV----------------VMVKAEEATYRHK-EVVEKVMVGVVIC-- 204

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 205 KHMEEVEMETVGEETYRHTEVVEMVM 211

The following BLAST results are available for this feature:
BLAST of Cucsa.143270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZN4_CUCSA2.0e-3690.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1[more]
A0A0A0LZN4_CUCSA4.3e-0750.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1[more]
BLAST of Cucsa.143270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663622|ref|XP_011660124.1|2.9e-3690.00PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus][more]
gi|778663622|ref|XP_011660124.1|9.9e-0547.67PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus][more]
gi|700211378|gb|KGN66474.1|6.2e-0750.57hypothetical protein Csa_1G613460 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.143270.1Cucsa.143270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.143270Csa1G613460Cucumber (Chinese Long) v2cgycuB205
Cucsa.143270CsaV3_1G042660Cucumber (Chinese Long) v3cgycucB213
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.143270Cucumber (Gy14) v1cgycgyB010
Cucsa.143270Cucurbita maxima (Rimu)cgycmaB0395
Cucsa.143270Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.143270Cucurbita maxima (Rimu)cgycmaB0397
Cucsa.143270Cucurbita maxima (Rimu)cgycmaB0398
Cucsa.143270Cucurbita maxima (Rimu)cgycmaB0399
Cucsa.143270Cucurbita moschata (Rifu)cgycmoB0395
Cucsa.143270Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.143270Cucurbita moschata (Rifu)cgycmoB0397
Cucsa.143270Cucurbita moschata (Rifu)cgycmoB0398
Cucsa.143270Cucurbita moschata (Rifu)cgycmoB0399
Cucsa.143270Wild cucumber (PI 183967)cgycpiB208
Cucsa.143270Wild cucumber (PI 183967)cgycpiB211
Cucsa.143270Cucumber (Chinese Long) v2cgycuB208
Cucsa.143270Melon (DHL92) v3.5.1cgymeB237
Cucsa.143270Melon (DHL92) v3.5.1cgymeB238
Cucsa.143270Melon (DHL92) v3.5.1cgymeB239
Cucsa.143270Watermelon (Charleston Gray)cgywcgB242
Cucsa.143270Watermelon (97103) v1cgywmB251
Cucsa.143270Cucurbita pepo (Zucchini)cgycpeB0382
Cucsa.143270Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.143270Cucurbita pepo (Zucchini)cgycpeB0386
Cucsa.143270Bottle gourd (USVL1VR-Ls)cgylsiB228
Cucsa.143270Bottle gourd (USVL1VR-Ls)cgylsiB230
Cucsa.143270Melon (DHL92) v3.6.1cgymedB234
Cucsa.143270Melon (DHL92) v3.6.1cgymedB235
Cucsa.143270Silver-seed gourdcarcgyB0212
Cucsa.143270Silver-seed gourdcarcgyB0539
Cucsa.143270Silver-seed gourdcarcgyB0599
Cucsa.143270Silver-seed gourdcarcgyB1039
Cucsa.143270Cucumber (Chinese Long) v3cgycucB216
Cucsa.143270Watermelon (97103) v2cgywmbB241
Cucsa.143270Wax gourdcgywgoB277
Cucsa.143270Wax gourdcgywgoB278
Cucsa.143270Wax gourdcgywgoB281
Cucsa.143270Wax gourdcgywgoB282