Cucsa.143270 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.143270
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold01079 : 1612596 .. 1612868 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATGGTGGAGGAGGAGACTTATAAACATATGGTGGaGGTGGAGATGGTGATGGTGGTGGTGgTGATTtATAAAtGTATGGAGGTGGCGGTGATGGAGAAGGTGGAGGAGGTGAGCTATAGACATAAGGGGgAGGTGGTGGAGATTTGTAATAATAAGGTGATGGCGGTGGTGGAGACTTCAATGGCGGTGGTGGTGAACTATAATAATAAGGGGATGGTGGCGGTGGTGATGCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

mRNA sequence

atggtgatggtgGAGGAGGAGACTTATAAACATAtggtggaggtggagatggtgatggtggtggtggtgATTTATAAATGTAtggaggtggcggtgatggagaaggtggaggaggtgagctatagacataagggggaggtggtggagatttgtaataataaggtgatggcggtggtggagacttcaatggcggtggtggtgaactataataataaggggatggtggcggtggtgatgCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

Coding sequence (CDS)

ATGGTGATGGTGGAGGAGGAGACTTATAAACATATGGTGGaGGTGGAGATGGTGATGGTGGTGGTGgTGATTtATAAAtGTATGGAGGTGGCGGTGATGGAGAAGGTGGAGGAGGTGAGCTATAGACATAAGGGGgAGGTGGTGGAGATTTGTAATAATAAGGTGATGGCGGTGGTGGAGACTTCAATGGCGGTGGTGGTGAACTATAATAATAAGGGGATGGTGGCGGTGGTGATGCATAAACATAAGGGTTTTTTCCAGCCACAACTGTAG

Protein sequence

MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVETSMAVVVNYNNKGMVAVVMHKHKGFFQPQL*

Homology

[Close]

BLAST of Cucsa.143270 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.0e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 417 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 476

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 477 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 506

[Close]

BLAST of Cucsa.143270 vs. TrEMBL
Match: A0A0A0LZN4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-07
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVV------EICNNK 60
           M MVEEETYKH   VEM MV    YK  EV  ME VEE   +H+GEVV      EIC ++
Sbjct: 79  MEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVMEMVEEEICKHR 138

Query: 61  VMAVVETSMAVVVNYNNKGMVAVVMHK 82
               VE  M +V     K MVAVVM K
Sbjct: 139 --GEVEEVMEMVEEEICKHMVAVVMVK 163

HSP 2 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHK---------------- 60
           MVMVEEETYKH   VEM MV    YK  EV  ME VEE +Y+HK                
Sbjct: 63  MVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHR 122

Query: 61  GEVV------EICNNKVMAVVETSMAVVVNYNNKGMVAVVMHK 82
           GEVV      EIC ++    VE  M +V     K MVAVVM K
Sbjct: 123 GEVVMEMVEEEICKHR--GEVEEVMEMVEEEICKHMVAVVMVK 163

HSP 3 Score: 56.6 bits (135), Expect = 1.8e-05
Identity = 43/93 (46.24%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEIC-----NNKV 60
           M MV  ETY+H   VEM MVV VI K ME AVME VE  +Y+HK EVVE+        K 
Sbjct: 15  MKMVVGETYRHKEVVEMGMVVGVICKYMEEAVMEMVEGETYKHK-EVVEMVMVEEETYKH 74

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM-----HKHK 84
             VVE  M     Y +K +V + M     +KHK
Sbjct: 75  KEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

HSP 4 Score: 55.1 bits (131), Expect = 5.3e-05
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKG----EVVEICNNKVM 60
           M MVE ETYKH   VEMVMV    YK  EV  ME VEE +Y+HK     E+VE    K  
Sbjct: 47  MEMVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

Query: 61  AVVETSMAVVVNYNNKGMVAVVM-----HKHKG 85
            VVE  M       ++G V + M      KH+G
Sbjct: 107 EVVEMEMVEEEICKHRGEVVMEMVEEEICKHRG 139

HSP 5 Score: 50.1 bits (118), Expect = 1.7e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 161 MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 220

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 221 TEVVEMVMEVEEIYRYTEVVEMVM 243

HSP 6 Score: 35.8 bits (81), Expect = 3.3e+01
Identity = 34/86 (39.53%), Postives = 38/86 (44.19%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEE  KHMV V                VM K EE +YRHK EVVE       IC  
Sbjct: 145 MEMVEEEICKHMVAV----------------VMVKAEEATYRHK-EVVEKVMVGVVIC-- 204

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 205 KHMEEVEMETVGEETYRHTEVVEMVM 211

[Close]

BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|778663622|ref|XP_011660124.1| (PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 316 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 375

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 376 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 405

[Close]

BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|778663622|ref|XP_011660124.1| (PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 41/86 (47.67%), Postives = 45/86 (52.33%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEETYKHM   E VM V  I K M   VM K EE +YRHK EVVE       IC  
Sbjct: 28  MEMVEEETYKHMEVEEKVMAVEEICKHMVAVVMVKAEEATYRHK-EVVEKVMVGVVIC-- 87

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 88  KHMEEVEMETVGEETYRHTEVVEMVM 110

HSP 2 Score: 50.1 bits (118), Expect = 2.4e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 60  MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 119

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 120 TEVVEMVMEVEEIYRYTEVVEMVM 142

HSP 3 Score: 47.4 bits (111), Expect = 1.6e-02
Identity = 33/76 (43.42%), Postives = 40/76 (52.63%), Query Frame = 1


Query: 16 EMVMVVVVIYKCMEVAVMEKVEEVSYRHKG------EVVEICNNKVMAVVETSMAVVVNY 75
          EMV VVV IYK ME AVME VEE +Y+H         V EIC + V  V+  +      +
Sbjct: 11 EMVKVVVEIYKYMEEAVMEMVEEETYKHMEVEEKVMAVEEICKHMVAVVMVKAEEATYRH 70

Query: 76 N---NKGMVAVVMHKH 83
               K MV VV+ KH
Sbjct: 71 KEVVEKVMVGVVICKH 86

HSP 4 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 60
           MVM  EE Y++   VEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE
Sbjct: 417 MVMEVEEIYRYTEVVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNNKVMAVVE 476

Query: 61  TSMAVVVNYNNKGMVAVVMHKHKGFFQPQL 91
           TSMAVVVNYNNKGMVAVVMHKHKGF QPQL
Sbjct: 477 TSMAVVVNYNNKGMVAVVMHKHKGFSQPQL 506

[Close]

BLAST of Cucsa.143270 vs. NCBI nr
Match: gi|700211378|gb|KGN66474.1| (hypothetical protein Csa_1G613460 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-07
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVV------EICNNK 60
           M MVEEETYKH   VEM MV    YK  EV  ME VEE   +H+GEVV      EIC ++
Sbjct: 79  MEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHRGEVVMEMVEEEICKHR 138

Query: 61  VMAVVETSMAVVVNYNNKGMVAVVMHK 82
               VE  M +V     K MVAVVM K
Sbjct: 139 --GEVEEVMEMVEEEICKHMVAVVMVK 163

HSP 2 Score: 59.7 bits (143), Expect = 3.1e-06
Identity = 47/103 (45.63%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHK---------------- 60
           MVMVEEETYKH   VEM MV    YK  EV  ME VEE +Y+HK                
Sbjct: 63  MVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEEICKHR 122

Query: 61  GEVV------EICNNKVMAVVETSMAVVVNYNNKGMVAVVMHK 82
           GEVV      EIC ++    VE  M +V     K MVAVVM K
Sbjct: 123 GEVVMEMVEEEICKHR--GEVEEVMEMVEEEICKHMVAVVMVK 163

HSP 3 Score: 56.6 bits (135), Expect = 2.6e-05
Identity = 43/93 (46.24%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEIC-----NNKV 60
           M MV  ETY+H   VEM MVV VI K ME AVME VE  +Y+HK EVVE+        K 
Sbjct: 15  MKMVVGETYRHKEVVEMGMVVGVICKYMEEAVMEMVEGETYKHK-EVVEMVMVEEETYKH 74

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM-----HKHK 84
             VVE  M     Y +K +V + M     +KHK
Sbjct: 75  KEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

HSP 4 Score: 55.1 bits (131), Expect = 7.6e-05
Identity = 41/93 (44.09%), Postives = 48/93 (51.61%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKG----EVVEICNNKVM 60
           M MVE ETYKH   VEMVMV    YK  EV  ME VEE +Y+HK     E+VE    K  
Sbjct: 47  MEMVEGETYKHKEVVEMVMVEEETYKHKEVVEMEMVEEETYKHKEVVEMEMVEEETYKHK 106

Query: 61  AVVETSMAVVVNYNNKGMVAVVM-----HKHKG 85
            VVE  M       ++G V + M      KH+G
Sbjct: 107 EVVEMEMVEEEICKHRGEVVMEMVEEEICKHRG 139

HSP 5 Score: 50.1 bits (118), Expect = 2.4e-03
Identity = 38/84 (45.24%), Postives = 44/84 (52.38%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVEICNN-----KV 60
           MV  EE TY+H   VE VMV VVI K ME   ME V E +YRH  EVVE+        + 
Sbjct: 161 MVKAEEATYRHKEVVEKVMVGVVICKHMEEVEMETVGEETYRHT-EVVEMVMEVEEIYRY 220

Query: 61  MAVVETSMAVVVNYNNKGMVAVVM 80
             VVE  M V   Y    +V +VM
Sbjct: 221 TEVVEMVMEVEEIYRYTEVVEMVM 243

HSP 6 Score: 35.8 bits (81), Expect = 4.8e+01
Identity = 34/86 (39.53%), Postives = 38/86 (44.19%), Query Frame = 1


Query: 1   MVMVEEETYKHMVEVEMVMVVVVIYKCMEVAVMEKVEEVSYRHKGEVVE-------ICNN 60
           M MVEEE  KHMV V                VM K EE +YRHK EVVE       IC  
Sbjct: 145 MEMVEEEICKHMVAV----------------VMVKAEEATYRHK-EVVEKVMVGVVIC-- 204

Query: 61  KVMAVVETSMAVVVNYNNKGMVAVVM 80
           K M  VE        Y +  +V +VM
Sbjct: 205 KHMEEVEMETVGEETYRHTEVVEMVM 211

The following BLAST results are available for this feature:

BLAST of Cucsa.143270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZN4_CUCSA	2.0e-36	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1	[more]
A0A0A0LZN4_CUCSA	4.3e-07	50.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G613460 PE=4 SV=1	[more]

BLAST of Cucsa.143270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663622\|ref\|XP_011660124.1\|	2.9e-36	90.00	PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus]	[more]
gi\|778663622\|ref\|XP_011660124.1\|	9.9e-05	47.67	PREDICTED: uncharacterized protein LOC105436343 [Cucumis sativus]	[more]
gi\|700211378\|gb\|KGN66474.1\|	6.2e-07	50.57	hypothetical protein Csa_1G613460 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.143270.1	Cucsa.143270.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.143270	Csa1G613460	Cucumber (Chinese Long) v2	cgycuB205
Cucsa.143270	CsaV3_1G042660	Cucumber (Chinese Long) v3	cgycucB213

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.143270	Cucurbita maxima (Rimu)	cgycmaB0395
Cucsa.143270	Cucurbita maxima (Rimu)	cgycmaB0396
Cucsa.143270	Cucurbita maxima (Rimu)	cgycmaB0397
Cucsa.143270	Cucurbita maxima (Rimu)	cgycmaB0398
Cucsa.143270	Cucurbita maxima (Rimu)	cgycmaB0399
Cucsa.143270	Cucurbita moschata (Rifu)	cgycmoB0395
Cucsa.143270	Cucurbita moschata (Rifu)	cgycmoB0396
Cucsa.143270	Cucurbita moschata (Rifu)	cgycmoB0397
Cucsa.143270	Cucurbita moschata (Rifu)	cgycmoB0398
Cucsa.143270	Cucurbita moschata (Rifu)	cgycmoB0399
Cucsa.143270	Wild cucumber (PI 183967)	cgycpiB208
Cucsa.143270	Wild cucumber (PI 183967)	cgycpiB211
Cucsa.143270	Cucumber (Chinese Long) v2	cgycuB208
Cucsa.143270	Melon (DHL92) v3.5.1	cgymeB237
Cucsa.143270	Melon (DHL92) v3.5.1	cgymeB238
Cucsa.143270	Melon (DHL92) v3.5.1	cgymeB239
Cucsa.143270	Watermelon (Charleston Gray)	cgywcgB242
Cucsa.143270	Watermelon (97103) v1	cgywmB251
Cucsa.143270	Cucurbita pepo (Zucchini)	cgycpeB0382
Cucsa.143270	Cucurbita pepo (Zucchini)	cgycpeB0385
Cucsa.143270	Cucurbita pepo (Zucchini)	cgycpeB0386
Cucsa.143270	Bottle gourd (USVL1VR-Ls)	cgylsiB228
Cucsa.143270	Bottle gourd (USVL1VR-Ls)	cgylsiB230
Cucsa.143270	Melon (DHL92) v3.6.1	cgymedB234
Cucsa.143270	Melon (DHL92) v3.6.1	cgymedB235
Cucsa.143270	Silver-seed gourd	carcgyB0212
Cucsa.143270	Silver-seed gourd	carcgyB0539
Cucsa.143270	Silver-seed gourd	carcgyB0599
Cucsa.143270	Silver-seed gourd	carcgyB1039
Cucsa.143270	Cucumber (Chinese Long) v3	cgycucB216
Cucsa.143270	Watermelon (97103) v2	cgywmbB241
Cucsa.143270	Wax gourd	cgywgoB277
Cucsa.143270	Wax gourd	cgywgoB278
Cucsa.143270	Wax gourd	cgywgoB281
Cucsa.143270	Wax gourd	cgywgoB282
Cucsa.143270	Cucumber (Gy14) v1	cgycgyB010