Cucsa.142120 (gene) Cucumber (Gy14) v1

NameCucsa.142120
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDUF789 family protein
Locationscaffold01079 : 437217 .. 438351 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGGTAAGGGGCAAAGAATTATAATCACCAAAACCCGTCAAGGAATCCTACCAAGACCGATGAAATCGAGAGCCCATTGAGTAAAGTTGATTCTTGGAACACACAAGGCCTTCAGTTCCAGCACAGTACTTCTTTGAGGTCAATGCTTAGAATCAAAGAAAGTTGATTACGTACAACCTTGAATGGTTCCGTTTCTTGTGGCCCTTTAATGGTCTGCATGGCCTTTTCTGCATCTACAAGTCTTTGACCTCTAAGTAAATAATCCCGTCTGAGAGTTATTTGTTTCTGTTTTTCTTGGGAAATCTTAATTTTTGACGATGATATTTTCTTTGTTTCCAGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGGTGACTGTTGTGTTCAATATTACGTTCCATATTTGTCTGGTATCCAAATATATGGGGAAGCTGCTACATTGACATCAGATTCTCACGCCATGCAGGTACTTGACCTTCGAGTGGAATATGTTAACCCTCATGAGTATGAATTCTTTTTGTATGTGGATTTCTGTGCGTGATTTCCAGGTTGAGTGGAATATATATGTGTTTAATGAACTGTGAGTGTGAGAGTCATTTTACCAAGACTTATCTTCTACTCTACTGTGGGTTTCTTTTTAGATGTGATGATCAAGAACTTTTCCTACCATTCTTAACGTACGAGAACATTGGTTTTCCCCAGAAGTTGGCTCATTCTTTGTTTCTTTTTATTTGGTAGGCTGACTTGTGAGCACAGTGATGGAAGCATTGACTATGATTTAGGAAAAATCTTTTACATTAATCCATTAAAGACGTTTTCCAGCATGTTTCCACAAGTTAAATGGTTGATGATCCCACTGTTCTCTAGAAAAGTAAAACTTTTTTCCTAAATCGTAGCCAATGCTTCCATCGCTGGTTGTATCTCTACAAGAATCAAGATCACTATCATCGCTGGTTCACATATATTCTAGTTGGACAAACATAA

mRNA sequence

ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGATTCTCACGCCATGCAGGTACTTGACCTTCGAGTGGAATATGCTGACTTGTGAGCACAGTGATGGAAGCATTGACTATGATTTAGGAAAAATCTTTTACATTAATCCATTAAAGACCCAATGCTTCCATCGCTGGTTGTATCTCTACAAGAATCAAGATCACTATCATCGCTGGTTCACATATattctagttggacaaacataa

Coding sequence (CDS)

ATGTTGGGAATTCCGTTGCAGTTTGGGGGAATCAAAGGTGAAGACTGGTTTTATATTCCGAGAACTATGAGGGATAGGAGGACTTGTGATATCGAGTTTCAACTTTATTTCATTCTGCATGATCTGTGGGAATCTTTCAAGGAGTGGAGTGCATATGGCGCTGGAGTTCCTTTGGTACTCATGAAGATTCTCACGCCATGCAGGTACTTGACCTTCGAGTGGAATATGCTGACTTGTGAGCACAGTGATGGAAGCATTGACTATGATTTAGGAAAAATCTTTTACATTAATCCATTAAAGACCCAATGCTTCCATCGCTGGTTGTATCTCTACAAGAATCAAGATCACTATCATCGCTGGTTCACATATATTCTAGTTGGACAAACATAA

Protein sequence

MLGIPLQFGGIKGEDWFYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVLMKILTPCRYLTFEWNMLTCEHSDGSIDYDLGKIFYINPLKTQCFHRWLYLYKNQDHYHRWFTYILVGQT*
BLAST of Cucsa.142120 vs. TrEMBL
Match: A0A0A0LS49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024240 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-14
Identity = 52/105 (49.52%), Postives = 61/105 (58.10%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIF 95
           ++I      L  + ++ L CE           SDGSID+DLGK F
Sbjct: 143 IQIYGEAAALRSDSHVRLACEDSDLDSSRDTSSDGSIDHDLGKSF 187

BLAST of Cucsa.142120 vs. TrEMBL
Match: A0A0A0LS49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024240 PE=4 SV=1)

HSP 1 Score: 37.7 bits (86), Expect = 1.2e+01
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG  LQFGGIKGED FY+P
Sbjct: 1  MLGTTLQFGGIKGEDRFYVP 20


HSP 2 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL 61
           ++  +TMR RRTCD+EFQ YF L DLWESFKEWSAYGAGVPLVL
Sbjct: 109 YFSKKTMRGRRTCDVEFQPYFTLSDLWESFKEWSAYGAGVPLVL 152

BLAST of Cucsa.142120 vs. TrEMBL
Match: A0A061FUA9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_012430 PE=4 SV=1)

HSP 1 Score: 30.8 bits (68), Expect = 1.5e+03
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG   QFG ++GED FYIP
Sbjct: 1  MLGTGSQFGKVRGEDRFYIP 20


HSP 2 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL 61
           ++  +TMR RRTCD+EFQ YF L DLWESFKEWSAYGAGVPLVL
Sbjct: 109 YFSKKTMRGRRTCDVEFQPYFTLSDLWESFKEWSAYGAGVPLVL 152

BLAST of Cucsa.142120 vs. TrEMBL
Match: A0A061FV18_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_012430 PE=4 SV=1)

HSP 1 Score: 30.8 bits (68), Expect = 1.5e+03
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG   QFG ++GED FYIP
Sbjct: 1  MLGTGSQFGKVRGEDRFYIP 20


HSP 2 Score: 75.9 bits (185), Expect = 4.1e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query: 18  YIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL 61
           Y+ +TMR  RTCD+EFQ YF L DLWESFKEWSAYGAGVPLVL
Sbjct: 92  YLSKTMRGWRTCDVEFQPYFELGDLWESFKEWSAYGAGVPLVL 134

BLAST of Cucsa.142120 vs. TrEMBL
Match: A5BKM4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027947 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.1e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query: 18  YIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL 61
           Y+ +TMR  RTCD+EFQ YF L DLWESFKEWSAYGAGVPLVL
Sbjct: 177 YLSKTMRGWRTCDVEFQPYFELGDLWESFKEWSAYGAGVPLVL 219

BLAST of Cucsa.142120 vs. TAIR10
Match: AT4G16100.1 (AT4G16100.1 Protein of unknown function (DUF789))

HSP 1 Score: 55.1 bits (131), Expect = 3.8e-08
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1

Query: 27  RTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVLMKILTPCRY 70
           RT + E++ YF+L+DLW+SF+EWSAYG GVPL+L  I +  +Y
Sbjct: 114 RTREPEYRPYFLLNDLWDSFEEWSAYGVGVPLLLNGIDSVVQY 156

BLAST of Cucsa.142120 vs. TAIR10
Match: AT5G49220.1 (AT5G49220.1 Protein of unknown function (DUF789))

HSP 1 Score: 53.9 bits (128), Expect = 8.5e-08
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 1

Query: 21  RTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVLMKILTPCRYLTFEWNMLTCE 80
           R+  + +T + +   YF+L DLWESF EWSAYGAGVPL              E + L   
Sbjct: 128 RSRWELKTRESDCHTYFVLEDLWESFAEWSAYGAGVPL--------------EMHPLEMH 187

Query: 81  HSDGSIDYDL----GKIFYINPLK 101
            +D ++ Y +    G   Y++PLK
Sbjct: 188 GNDSTVQYYVPYLSGIQLYVDPLK 197

BLAST of Cucsa.142120 vs. TAIR10
Match: AT1G15030.1 (AT1G15030.1 Protein of unknown function (DUF789))

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1

Query: 18  YIPRTM-RDRRTCDIEFQL-YFILHDLWESFKEWSAYGAGVPLVL 61
           Y+ +T+ R+R   D+E Q+ YF+L D+WESF EWSAYG GVPL L
Sbjct: 64  YLSKTIVRERGGSDVESQVPYFLLGDVWESFAEWSAYGIGVPLTL 108

BLAST of Cucsa.142120 vs. TAIR10
Match: AT2G01260.1 (AT2G01260.1 Protein of unknown function (DUF789))

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-07
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1

Query: 23  MRDRRTCDIEFQL--YFILHDLWESFKEWSAYGAGVPLVL 61
           +R+RR  D   +L  YF+L D+W+SF EWSAYG GVPLVL
Sbjct: 87  LRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGVPLVL 126

BLAST of Cucsa.142120 vs. NCBI nr
Match: gi|659106756|ref|XP_008453428.1| (PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo])

HSP 1 Score: 89.7 bits (221), Expect = 4.0e-15
Identity = 54/108 (50.00%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIFYIN 98
           ++I      L  + N+ L CE           SDGSIDYDLGK F ++
Sbjct: 143 IQIYGEAAALRSDSNVRLACEDSDLDSSRDTSSDGSIDYDLGKSFNLS 190

BLAST of Cucsa.142120 vs. NCBI nr
Match: gi|659106756|ref|XP_008453428.1| (PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo])

HSP 1 Score: 38.1 bits (87), Expect = 1.4e+01
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG  LQFGGIKGED FYIP
Sbjct: 1  MLGTALQFGGIKGEDRFYIP 20


HSP 2 Score: 89.7 bits (221), Expect = 4.0e-15
Identity = 54/108 (50.00%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIFYIN 98
           ++I      L  + N+ L CE           SDGSIDYDLGK F ++
Sbjct: 143 IQIYGEAAALRSDSNVRLACEDSDLDSSRDTSSDGSIDYDLGKSFNLS 190

BLAST of Cucsa.142120 vs. NCBI nr
Match: gi|659106754|ref|XP_008453427.1| (PREDICTED: uncharacterized protein LOC103494138 isoform X2 [Cucumis melo])

HSP 1 Score: 38.1 bits (87), Expect = 1.4e+01
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG  LQFGGIKGED FYIP
Sbjct: 1  MLGTALQFGGIKGEDRFYIP 20


HSP 2 Score: 89.7 bits (221), Expect = 4.0e-15
Identity = 54/108 (50.00%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIFYIN 98
           ++I      L  + N+ L CE           SDGSIDYDLGK F ++
Sbjct: 143 IQIYGEAAALRSDSNVRLACEDSDLDSSRDTSSDGSIDYDLGKSFNLS 190

BLAST of Cucsa.142120 vs. NCBI nr
Match: gi|659106752|ref|XP_008453426.1| (PREDICTED: uncharacterized protein LOC103494138 isoform X1 [Cucumis melo])

HSP 1 Score: 38.1 bits (87), Expect = 1.4e+01
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG  LQFGGIKGED FYIP
Sbjct: 1  MLGTALQFGGIKGEDRFYIP 20


HSP 2 Score: 89.7 bits (221), Expect = 4.0e-15
Identity = 54/108 (50.00%), Postives = 63/108 (58.33%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIFYIN 98
           ++I      L  + N+ L CE           SDGSIDYDLGK F ++
Sbjct: 143 IQIYGEAAALRSDSNVRLACEDSDLDSSRDTSSDGSIDYDLGKSFNLS 190

BLAST of Cucsa.142120 vs. NCBI nr
Match: gi|659106758|ref|XP_008453429.1| (PREDICTED: uncharacterized protein LOC103494138 isoform X4 [Cucumis melo])

HSP 1 Score: 38.1 bits (87), Expect = 1.4e+01
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 1

Query: 1  MLGIPLQFGGIKGEDWFYIP 21
          MLG  LQFGGIKGED FYIP
Sbjct: 1  MLGTALQFGGIKGEDRFYIP 20


HSP 2 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 52/105 (49.52%), Postives = 61/105 (58.10%), Query Frame = 1

Query: 17  FYIPRTMRDRRTCDIEFQLYFILHDLWESFKEWSAYGAGVPLVL---------------- 76
           ++   TMRD RTCDIEFQ YFIL+DLWESFKEWSAYGAGVPLVL                
Sbjct: 83  YFSKTTMRDWRTCDIEFQPYFILNDLWESFKEWSAYGAGVPLVLDGGDSVVQYYVPYLSG 142

Query: 77  MKILTPCRYLTFEWNM-LTCE----------HSDGSIDYDLGKIF 95
           ++I      L  + ++ L CE           SDGSID+DLGK F
Sbjct: 143 IQIYGEAAALRSDSHVRLACEDSDLDSSRDTSSDGSIDHDLGKSF 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LS49_CUCSA5.2e-1449.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024240 PE=4 SV=1[more]
A0A0A0LS49_CUCSA1.2e+0180.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G024240 PE=4 SV=1[more]
A0A061FUA9_THECC1.5e+0365.00Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_012430 PE=4 SV=1[more]
A0A061FV18_THECC1.5e+0365.00Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_012430 PE=4 SV=1[more]
A5BKM4_VITVI4.1e-1179.07Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027947 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16100.13.8e-0855.81 Protein of unknown function (DUF789)[more]
AT5G49220.18.5e-0836.90 Protein of unknown function (DUF789)[more]
AT1G15030.11.1e-0757.78 Protein of unknown function (DUF789)[more]
AT2G01260.17.2e-0760.00 Protein of unknown function (DUF789)[more]
Match NameE-valueIdentityDescription
gi|659106756|ref|XP_008453428.1|4.0e-1550.00PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo][more]
gi|659106756|ref|XP_008453428.1|1.4e+0185.00PREDICTED: uncharacterized protein LOC103494138 isoform X3 [Cucumis melo][more]
gi|659106754|ref|XP_008453427.1|1.4e+0185.00PREDICTED: uncharacterized protein LOC103494138 isoform X2 [Cucumis melo][more]
gi|659106752|ref|XP_008453426.1|1.4e+0185.00PREDICTED: uncharacterized protein LOC103494138 isoform X1 [Cucumis melo][more]
gi|659106758|ref|XP_008453429.1|1.4e+0185.00PREDICTED: uncharacterized protein LOC103494138 isoform X4 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008507DUF789
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.142120.1Cucsa.142120.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008507Protein of unknown function DUF789PFAMPF05623DUF789coord: 30..61
score: 7.
NoneNo IPR availablePANTHERPTHR31343FAMILY NOT NAMEDcoord: 22..60
score: 5.9
NoneNo IPR availablePANTHERPTHR31343:SF5SUBFAMILY NOT NAMEDcoord: 22..60
score: 5.9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.142120CSPI01G29080Wild cucumber (PI 183967)cgycpiB208
The following gene(s) are paralogous to this gene:

None