Cucsa.141910 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.141910
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description30S ribosomal protein S10, putative
Locationscaffold01079 : 243105 .. 243298 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGTCAACATGAGCTTAGCTCAACTGGCACCTGTATGTTCATAAACATTTATTGTGTTCTTAAATCCTCTCGTGTCTATAAAAATACAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGTCCAAACAATCGATTTTTTGATGCAACTCGACCTTCGAAGAAATTGA

mRNA sequence

attgtcaacatgagcttagctcaactggcacctgtatgttcATAAACATTTATTGTGTTCTTAAATCCTCTCGTGTCTATAAAAATACAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGTCCAAACAATCGATTTTTTGATGCAACTCGACCTTCGAAGAAATTGA

Coding sequence (CDS)

ATTGTCAACATGAGCTTAGCTCAACTGGCACCTGTATGTTCATAAACATTTATTGTGTTCTTAAATCCTCTCGTGTCTATAAAAATACAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGTCCAAACAATCGATTTTTTGATGCAACTCGACCTTCGAAGAAATTGA

Protein sequence

CQHELSSTGTCMFINIYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDLRRN*
Homology
[Close]
BLAST of Cucsa.141910 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQR+IDILYPT QTID LMQLDL
Sbjct: 137 IYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDL 181

[Close]
BLAST of Cucsa.141910 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           I+CVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 143 IFCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 187

[Close]
BLAST of Cucsa.141910 vs. Swiss-Prot
Match: RS10_STRCO (30S ribosomal protein S10 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 15 NIYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
          N+YCV+KS   YK++R HFE+RTH+RLIDIL PT +T+D LM+LDL
Sbjct: 47 NVYCVIKSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDL 92

[Close]
BLAST of Cucsa.141910 vs. Swiss-Prot
Match: RS10_STRAW (30S ribosomal protein S10 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 15 NIYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
          N+YCV+KS   YK++R HFE+RTH+RLIDIL PT +T+D LM+LDL
Sbjct: 47 NVYCVIKSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDL 92

[Close]
BLAST of Cucsa.141910 vs. Swiss-Prot
Match: RS10_STRGG (30S ribosomal protein S10 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-11
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 15 NIYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
          N+YCV+KS   YK++R HFE+RTH+RLIDIL PT +T+D LM+LDL
Sbjct: 47 NVYCVIKSPHKYKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDL 92

[Close]
BLAST of Cucsa.141910 vs. TrEMBL
Match: A9YUX9_DAUCA (Chloroplast 30S ribosomal protein S10 (Fragment) OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16 IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
          IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 47 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 91

[Close]
BLAST of Cucsa.141910 vs. TrEMBL
Match: A0A067L5B3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 159 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 203

[Close]
BLAST of Cucsa.141910 vs. TrEMBL
Match: A0A0K9RWE7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026730 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 141 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 185

[Close]
BLAST of Cucsa.141910 vs. TrEMBL
Match: A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 152 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 196

[Close]
BLAST of Cucsa.141910 vs. TrEMBL
Match: I1N0C3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G079900 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-13
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 151 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 195

[Close]
BLAST of Cucsa.141910 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-16
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQR+IDILYPT QTID LMQLDL
Sbjct: 137 IYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDL 181

[Close]
BLAST of Cucsa.141910 vs. NCBI nr
Match: gi|947049013|gb|KRG98541.1| (hypothetical protein GLYMA_18G079900 [Glycine max])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 151 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 195

[Close]
BLAST of Cucsa.141910 vs. NCBI nr
Match: gi|702379638|ref|XP_010063278.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 128 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 172

[Close]
BLAST of Cucsa.141910 vs. NCBI nr
Match: gi|470110576|ref|XP_004291556.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 142 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 186

[Close]
BLAST of Cucsa.141910 vs. NCBI nr
Match: gi|162945917|gb|ABY20970.1| (chloroplast 30S ribosomal protein S10, partial [Daucus carota])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16 IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
          IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 47 IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 91

[Close]
BLAST of Cucsa.141910 vs. NCBI nr
Match: gi|657987535|ref|XP_008385921.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Malus domestica])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-12
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 1 

Query: 16  IYCVLKSSRVYKNTRFHFEIRTHQRLIDILYPTVQTIDFLMQLDL 61
           IYCVLKS  V+K+ RFHFEIRTHQRLIDILYPT QTID LMQLDL
Sbjct: 57  IYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDL 101

The following BLAST results are available for this feature:
BLAST of Cucsa.141910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR10_ARATH1.3e-1482.2230S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S... [more]
RR10_MESCR2.2e-1482.2230S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS... [more]
RS10_STRCO6.5e-1165.2230S ribosomal protein S10 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2... [more]
RS10_STRAW6.5e-1165.2230S ribosomal protein S10 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 4... [more]
RS10_STRGG6.5e-1165.2230S ribosomal protein S10 OS=Streptomyces griseus subsp. griseus (strain JCM 462... [more]
BLAST of Cucsa.141910 vs. TrEMBL
Match NameE-valueIdentityDescription
A9YUX9_DAUCA8.3e-1384.44Chloroplast 30S ribosomal protein S10 (Fragment) OS=Daucus carota PE=2 SV=1[more]
A0A067L5B3_JATCU8.3e-1384.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1[more]
A0A0K9RWE7_SPIOL8.3e-1384.44Uncharacterized protein OS=Spinacia oleracea GN=SOVF_026730 PE=3 SV=1[more]
A0A0A0LEH6_CUCSA8.3e-1384.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1[more]
I1N0C3_SOYBN8.3e-1384.44Uncharacterized protein OS=Glycine max GN=GLYMA_18G079900 PE=3 SV=1[more]
BLAST of Cucsa.141910 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13120.17.1e-1682.22 Ribosomal protein S10p/S20e family protein[more]
BLAST of Cucsa.141910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|947049013|gb|KRG98541.1|1.2e-1284.44hypothetical protein GLYMA_18G079900 [Glycine max][more]
gi|702379638|ref|XP_010063278.1|1.2e-1284.44PREDICTED: 30S ribosomal protein S10, chloroplastic [Eucalyptus grandis][more]
gi|470110576|ref|XP_004291556.1|1.2e-1284.44PREDICTED: 30S ribosomal protein S10, chloroplastic [Fragaria vesca subsp. vesca... [more]
gi|162945917|gb|ABY20970.1|1.2e-1284.44chloroplast 30S ribosomal protein S10, partial [Daucus carota][more]
gi|657987535|ref|XP_008385921.1|1.2e-1284.44PREDICTED: 30S ribosomal protein S10, chloroplastic [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR027486Ribosomal_S10_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.141910.1Cucsa.141910.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 14..60
score: 1.7
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 15..60
score: 1.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 15..58
score: 6.4
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 15..60
score: 5.23
NoneNo IPR availablePANTHERPTHR11700:SF937S RIBOSOMAL PROTEIN S10, MITOCHONDRIALcoord: 14..60
score: 1.7