Cucsa.141790 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.141790
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRING-box protein
Locationscaffold01079 : 181184 .. 182809 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCCCCGGATTTCTTCTTCGCCGCTCACCGGAGGACTGACTCTTTCCGATCGAGGTTTCATCCATGGCTACCTTGGATACCGATGTCCCTATGGTTCCCGCCGGTGAAGCTTCAAGCAGTGCTGGCCCTTCGTCTTCCAAAAAACCTAAGCGATTTGAGATCAAGAAGTGGAACGCTGTCGCTCTCTGGGCTTGGGGTATTTCCAAACCCTAATTTCAATTTCTTTGATTTTCTTTTTATTCCTTCCGCTTTTGAGATGTTTCTTTGCTGATTCTTATTGTTGTTGCAGATATTGTTGTCGATAATTGTGCAATTTGTAGGAATCACATCATGGATCTTTGTAAGTTGGAGGAGTTTTTTAAATTTCGTTTAATTCCAGATGTCGTTTTGGATTATAGTTTTGATGTTTCTTACCGGTGTTCATCGTTTAGGTATTGAATGTCAGGCGAATCAAGCGAGTGCTACCAGTGAGGAATGCACTGTTGCCTGGGGTATGCTATTACGCCTCCATTTTCTCTAACATTGATTTTGATTTTAGTTTCCTTGTTTGAGATGCTTTGGTAGCTCTGTTTGCTATATTTTCTTTCCTTTTTCTGTGAGATATTTTCAGTTTGTCTTTGGATTGTTTGTGCATTTTGAATTGCAGCTCCCCTTGAGATATTAGTGGAAAATCATCCCGAACTATTATTTTTTCTTAATTTAAACTGCTAAAAGATACCAATTGTCTTGCTGAATGGACCTTTCTTTCCTTTGATACTGATGAATGAAAGCTACTTTAAACTTTAGAAGGTTCATACTAATCTAGGATTTTCACTCTTGATTTCTCGTTGCCATTTGTTAGATGATATGATATTAAGTTCATTAGTTTAAGTTTTTGGGTCAATCGTTGATTTAATATGGTATCAGAGTATTGCTTCAAGAGTTCTTCAAAGTAATTTTCTCTCCAATATTTTGATTTCTACTTTTCGGGTCGTCTACATATATCAAGCCTGGGTATTAGGTAATATGATGTTAAAGCTACTTTCACTTCAGCTTGAATGATTTAAGACCATTTGATCTCGAGAGTCATTGTGATATTTTTTTTTGGGTGATTAGGTCTTCATTTGCTTCTATATTTTGGTTTTGTTCTTTATTAAGATTCTTGTTTGCAGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTAGGTACTTTAGTTTACTATAACGTTTCTAATTCATATAACTGTATAAAAATTCTGCTCCTTTTTCTGATTGAATTCTTGTTATGTTTTACAGACAACAGCGAATGGGAGTTCCAGAAGTATGGACATTAGGACCTTCATATTGTCGCAGTTGCCGAACGGTCAGTCAGACAAATACTACCTTAAAGTGTCTAGTTGTTGAAAACAAACTACTGTCCATTCCCAGATCCTGTTTGTGTTTTAAGATTGACTAGTTTATTTTACTATGTGAACCTTAGATGTTTCTTTACAAATATTGATTTAAATGTTAATTTTTCCTTCTTTGAACATCCCTGCTTTTGTTTTCCGCTGTCTATGTTTTGGGTCGAACCGGAATGCTAATTCTCTTTGTTAATTTTCGCCTTCA

mRNA sequence

ACTCCCCGGATTTCTTCTTCGCCGCTCACCGGAGGACTGACTCTTTCCGATCGAGGTTTCATCCATGGCTACCTTGGATACCGATGTCCCTATGGTTCCCGCCGGTGAAGCTTCAAGCAGTGCTGGCCCTTCGTCTTCCAAAAAACCTAAGCGATTTGAGATCAAGAAGTGGAACGCTGTCGCTCTCTGGGCTTGGGATATTGTTGTCGATAATTGTGCAATTTGTAGGAATCACATCATGGATCTTTGTATTGAATGTCAGGCGAATCAAGCGAGTGCTACCAGTGAGGAATGCACTGTTGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTAGACAACAGCGAATGGGAGTTCCAGAAGTATGGACATTAGGACCTTCATATTGTCGCAGTTGCCGAACGGTCAGTCAGACAAATACTACCTTAAAGTGTCTAGTTGTTGAAAACAAACTACTGTCCATTCCCAGATCCTGTTTGTGTTTTAAGATTGACTAGTTTATTTTACTATGTGAACCTTAGATGTTTCTTTACAAATATTGATTTAAATGTTAATTTTTCCTTCTTTGAACATCCCTGCTTTTGTTTTCCGCTGTCTATGTTTTGGGTCGAACCGGAATGCTAATTCTCTTTGTTAATTTTCGCCTTCA

Coding sequence (CDS)

ATGGCTACCTTGGATACCGATGTCCCTATGGTTCCCGCCGGTGAAGCTTCAAGCAGTGCTGGCCCTTCGTCTTCCAAAAAACCTAAGCGATTTGAGATCAAGAAGTGGAACGCTGTCGCTCTCTGGGCTTGGGATATTGTTGTCGATAATTGTGCAATTTGTAGGAATCACATCATGGATCTTTGTATTGAATGTCAGGCGAATCAAGCGAGTGCTACCAGTGAGGAATGCACTGTTGCCTGGGGGGTATGCAACCATGCTTTTCACTTCCACTGCATTAGTCGTTGGTTGAAGACTCGCCAAGTTTGTCCATTAGACAACAGCGAATGGGAGTTCCAGAAGTATGGACATTAG

Protein sequence

MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH*
Homology
[Close]
BLAST of Cucsa.141790 vs. Swiss-Prot
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-61
Identity = 109/118 (92.37%), Postives = 113/118 (95.76%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118

[Close]
BLAST of Cucsa.141790 vs. Swiss-Prot
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-53
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKK-PKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L++DV M   GE+SS + PSSS K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]
BLAST of Cucsa.141790 vs. Swiss-Prot
Match: RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.4e-53
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 1 

Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]
BLAST of Cucsa.141790 vs. Swiss-Prot
Match: RBX1_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 7.4e-53
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 1 

Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]
BLAST of Cucsa.141790 vs. Swiss-Prot
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2)

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-52
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 1 

Query: 10  MVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + +  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EWEFQKYGH
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYGH 108

[Close]
BLAST of Cucsa.141790 vs. TrEMBL
Match: A0A0A0LWN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G597030 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.3e-66
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. TrEMBL
Match: A0A0A0LFP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000120 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.7e-64
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPA EASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAVEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. TrEMBL
Match: M5X2V0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013547mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-64
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVP GEASSSAGPSS+K+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. TrEMBL
Match: A0A0L9V5U2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g118500 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-63
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPM+PAGEASSSAGPSS KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEASSSAGPSS-KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116

[Close]
BLAST of Cucsa.141790 vs. TrEMBL
Match: A0A0S3SBM6_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G149500 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.5e-63
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPM+PAGEASSSAGPSS KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEASSSAGPSS-KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116

[Close]
BLAST of Cucsa.141790 vs. TAIR10
Match: AT5G20570.2 (AT5G20570.2 RING-box 1)

HSP 1 Score: 214.2 bits (544), Expect = 4.5e-56
Identity = 107/142 (75.35%), Postives = 111/142 (78.17%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSS-AGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLD+DV M+PAGEASSS A  SS+KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW----GVCN--------------------HAFHFHCISR 118
           DLCIECQANQASATSEECTVAW      CN                    HAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]
BLAST of Cucsa.141790 vs. TAIR10
Match: AT3G42830.1 (AT3G42830.1 RING/U-box superfamily protein)

HSP 1 Score: 209.5 bits (532), Expect = 1.1e-54
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKK-PKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L++DV M   GE+SS + PSSS K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDVCEWEFQKYGH 115

[Close]
BLAST of Cucsa.141790 vs. TAIR10
Match: AT3G05870.1 (AT3G05870.1 anaphase-promoting complex/cyclosome 11)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-16
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = 1 

Query: 27  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWL--KTRQV-CPLDNSEWEFQK 115
           AFH HCI +W+  +T Q  CP+   EW+F++
Sbjct: 62  AFHLHCILKWVNSQTSQAHCPMCRREWQFKE 87

[Close]
BLAST of Cucsa.141790 vs. NCBI nr
Match: gi|449452576|ref|XP_004144035.1| (PREDICTED: RING-box protein 1a [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 7.6e-66
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. NCBI nr
Match: gi|1009142986|ref|XP_015889019.1| (PREDICTED: RING-box protein 1a [Ziziphus jujuba])

HSP 1 Score: 253.8 bits (647), Expect = 1.4e-64
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVP GEASSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. NCBI nr
Match: gi|657949315|ref|XP_008342455.1| (PREDICTED: RING-box protein 1a [Malus domestica])

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-64
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPM+PAGE SSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMIPAGEGSSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. NCBI nr
Match: gi|449446628|ref|XP_004141073.1| (PREDICTED: RING-box protein 1a-like [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.5e-64
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVPA EASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAVEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

[Close]
BLAST of Cucsa.141790 vs. NCBI nr
Match: gi|596011505|ref|XP_007218617.1| (hypothetical protein PRUPE_ppa013547mg [Prunus persica])

HSP 1 Score: 252.7 bits (644), Expect = 3.2e-64
Identity = 113/117 (96.58%), Postives = 116/117 (99.15%), Query Frame = 1 

Query: 1   MATLDTDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLD+DVPMVP GEASSSAGPSS+K+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKRPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117

The following BLAST results are available for this feature:
BLAST of Cucsa.141790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBX1A_ARATH1.1e-6192.37RING-box protein 1a OS=Arabidopsis thaliana GN=RBX1A PE=1 SV=1[more]
RBX1B_ARATH2.0e-5383.90RING-box protein 1b OS=Arabidopsis thaliana GN=RBX1B PE=2 SV=1[more]
RBX1_HUMAN7.4e-5384.26E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens GN=RBX1 PE=1 SV=1[more]
RBX1_MOUSE7.4e-5384.26E3 ubiquitin-protein ligase RBX1 OS=Mus musculus GN=Rbx1 PE=1 SV=1[more]
RBX1_SALSA2.2e-5283.33RING-box protein 1 OS=Salmo salar GN=rbx1 PE=2 SV=2[more]
BLAST of Cucsa.141790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWN9_CUCSA5.3e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G597030 PE=4 SV=1[more]
A0A0A0LFP5_CUCSA1.7e-6498.29Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000120 PE=4 SV=1[more]
M5X2V0_PRUPE2.2e-6496.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013547mg PE=4 SV=1[more]
A0A0L9V5U2_PHAAN1.5e-6397.44Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g118500 PE=4 SV=1[more]
A0A0S3SBM6_PHAAN1.5e-6397.44Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G149500 PE=... [more]
BLAST of Cucsa.141790 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20570.24.5e-5675.35 RING-box 1[more]
AT3G42830.11.1e-5483.90 RING/U-box superfamily protein[more]
AT3G05870.17.7e-1639.56 anaphase-promoting complex/cyclosome 11[more]
BLAST of Cucsa.141790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452576|ref|XP_004144035.1|7.6e-66100.00PREDICTED: RING-box protein 1a [Cucumis sativus][more]
gi|1009142986|ref|XP_015889019.1|1.4e-6497.44PREDICTED: RING-box protein 1a [Ziziphus jujuba][more]
gi|657949315|ref|XP_008342455.1|1.9e-6496.58PREDICTED: RING-box protein 1a [Malus domestica][more]
gi|449446628|ref|XP_004141073.1|2.5e-6498.29PREDICTED: RING-box protein 1a-like [Cucumis sativus][more]
gi|596011505|ref|XP_007218617.1|3.2e-6496.58hypothetical protein PRUPE_ppa013547mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.141790.1Cucsa.141790.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 62..107
score: 9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 29..116
score: 9.0
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 49..107
score: 2.5
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 5..117
score: 5.4
NoneNo IPR availablePANTHERPTHR11210:SF21SUBFAMILY NOT NAMEDcoord: 5..117
score: 5.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 29..114
score: 9.19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.141790Cla011156Watermelon (97103) v1cgywmB251
Cucsa.141790Cla016864Watermelon (97103) v1cgywmB252
Cucsa.141790Csa1G597030Cucumber (Chinese Long) v2cgycuB205
Cucsa.141790Csa2G000120Cucumber (Chinese Long) v2cgycuB206
Cucsa.141790MELO3C004656Melon (DHL92) v3.5.1cgymeB240
Cucsa.141790MELO3C015525Melon (DHL92) v3.5.1cgymeB238
Cucsa.141790ClCG03G015040Watermelon (Charleston Gray)cgywcgB242
Cucsa.141790CSPI01G28740Wild cucumber (PI 183967)cgycpiB208
Cucsa.141790CSPI02G00120Wild cucumber (PI 183967)cgycpiB209
Cucsa.141790CmaCh11G007340Cucurbita maxima (Rimu)cgycmaB0396
Cucsa.141790CmaCh10G007670Cucurbita maxima (Rimu)cgycmaB0394
Cucsa.141790CmoCh10G007980Cucurbita moschata (Rifu)cgycmoB0393
Cucsa.141790CmoCh11G007470Cucurbita moschata (Rifu)cgycmoB0396
Cucsa.141790Lsi11G001560Bottle gourd (USVL1VR-Ls)cgylsiB227
Cucsa.141790Lsi06G003390Bottle gourd (USVL1VR-Ls)cgylsiB230
Cucsa.141790Cp4.1LG18g03080Cucurbita pepo (Zucchini)cgycpeB0383
Cucsa.141790Cp4.1LG04g11220Cucurbita pepo (Zucchini)cgycpeB0385
Cucsa.141790MELO3C015525.2Melon (DHL92) v3.6.1cgymedB235
Cucsa.141790MELO3C004656.2Melon (DHL92) v3.6.1cgymedB236
Cucsa.141790CsaV3_2G001130Cucumber (Chinese Long) v3cgycucB214
Cucsa.141790CsaV3_1G041100Cucumber (Chinese Long) v3cgycucB213
Cucsa.141790Cla97C11G207790Watermelon (97103) v2cgywmbB239
Cucsa.141790Cla97C03G065260Watermelon (97103) v2cgywmbB241
Cucsa.141790Bhi02G001505Wax gourdcgywgoB282
Cucsa.141790Carg12955Silver-seed gourdcarcgyB0112
Cucsa.141790Carg21925Silver-seed gourdcarcgyB1006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.141790Watermelon (Charleston Gray)cgywcgB240
Cucsa.141790Watermelon (97103) v1cgywmB250
Cucsa.141790Bottle gourd (USVL1VR-Ls)cgylsiB229
Cucsa.141790Melon (DHL92) v3.6.1cgymedB233
Cucsa.141790Cucumber (Chinese Long) v3cgycucB215
Cucsa.141790Watermelon (97103) v2cgywmbB242
Cucsa.141790Wax gourdcgywgoB279
Cucsa.141790Cucumber (Gy14) v1cgycgyB091
Cucsa.141790Wild cucumber (PI 183967)cgycpiB210
Cucsa.141790Cucumber (Chinese Long) v2cgycuB207
Cucsa.141790Melon (DHL92) v3.5.1cgymeB236