Cucsa.140390 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.140390
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L7/L12, putative
Location	scaffold01071 : 277029 .. 282185 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TtaTTTTTtAAAAAAaTTtCCTTCCTCTTCCTTCTCACGCAAACCCCCCcTCCTATACCCTTCAAGTTTCAGTGGCCGCAACGCCAGCCAACTCCTTTCCTCTCGCCGGCATCTATCTCTATCTCTGCACTGCCACTGTGGCTGAACGCCCACCAGCCAAACGCACCGCCGCCAGCTCTCGCCGCGCAGGATCGAAGTTGCTACCCTATCTGTGTTGTACTTTGTCCCTTCACCGATCAGTTACTGTCTACCGATTGGAAGTCGTTCACTAACTCCTGGCCGTGGGATTTTGTTTGTCCGCCACGCTGCCGCTTGGACCAGTCACGCTACCTCGAGATTCGTTTCGCGCTGCTACCTAATCCAAAGTCGTAGCGCTCAGATCTTGCCACTAGGACCCGAGTCCTGTGTCGAGCTAGTTGCCCTTTCTGTTTGTATGTTGATTGAGCCTCCGGTGTGCTAGTAAGCTTCGAATCTCCGCTGTATTTCCAGTAGGTTGCCGCTGAAATTGTTATTCTTGAGCTTTGGGGTAAGATTTAATTGTTTTAGTTGGGATTCTTGTAAATTTTGGAGCACAGATTAAATTTGAACTTAAATTTTTATCAATACCATCATGTTTAGGTATTAAAATTGAGTTCTTGGAAGGATTTAGCTGTTGTCTAGCCAAGAAGGAGTGATTTTTGGGCGTTTTGGCACACTCTAAGTTCGATTCTAAAGCTTTTTGGAGTGGCTCTTGAATAGCCATTGAAGTTTAGTGTTAATATTGAATAACATATGATCTTTGGATACTTATAATGAGTTCTCTTGGAATTTTGAATGCCAATTTAGTTTTAGCATGAACTTGGAAGCATTGATCAACACACGTTTAAGGTTCTTTTAGACAAGTTTGGGTAAGTTCCCAAGTATTTGACTTGTTAGATTGGTATTGAGTTGTTACTGAATCTAAATCTCCAAGTTGACTTAAGTTTGGGTGTGGTGTTTAAGTTTAAGTTTAAGGGTCCAAAACTGAAATTTTAGCTTAAATTAAAGTATTTGGGGAATAATTCAATCTAAATCTTAGGAAGTGCTTAAGGCTGTTGGTCTGTTGATATAATGGATATTAAGGGTGAAAAAAACCGAACCAAACCAAACCAACTCGGTTTGTCATTCTTTTAAGTTTGTCATTCTCCACCATGGTCGCTTTAGAACCAGTGTCAGGTATCAAGTAAAGTAATGTATTTGTTTTGTATTTGTTCTTTGAGCAATGAGTAAAGTAAAGTAAATTTCACTGTTTTTCGATCTCTTCGCTTTTGCTATCCTTTTCTGTACTTGTTCTTCGATATTTATATACCAGGCACCCTGCTATCTACCCTCTGCCATGGCCGTGCTCTGTACTGCTCCATTTTCAGACCCACGTTCTTGAGTCATAGTTTTTGTTGTCGGTGGGTTTTTGAGGTTGTGAAGTGAATGTGATTTTTCCCCATATGTGATATAGAGCTCGTGATATGTGGAAGAAAATGTTAGGTGACTGTGTTTTAATAGAGTTATTTTCCGTAGGTCTCCTTGTTGGTTTTAGAAGTTTGGGGGAGTGGAGTGTTCATAAGTACAAGTTAAATGGGCTTTGATAAACAGTAACAAAATCATGTCGGCCGAGGGAATGCCTTTGAGAAACTCAGAGGAATAATCATTGAGCTTGTAAAATGCTTTGCAATATGATGGATGAGGAGCAACTGCATTTTTCAATTGAGAGTGTGAAAATGGTTAATTAAGAGAAGGATTGAATTAGAAACAGCGGTGAGGACTGAGGCTGTGTTTTtGGTTGGTGTGTGAAAaTGGGGACTAAGGAGGGTTAGATATATTAAATTTGGAAACGTTTGGGGTCATTATGGCAATTAAAAACTGCAACTATATTGTTAACCTCCTATTCTGTTCATTTTTTTTttGTTTTGTTCTTATTTtATTTTtGTtGTGcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcTGCAACTATtATtGTTAACCtCCTtATTcTtgTTCTttaTTTTTTTTTGTTTtGTTCTTATTTTATTTTTGTTGTGCATTCCTCTATATGTGTTTAATTTTTTtGTTGTTGCCTTGTCTTCCTTGTTTtCTTTGATGATTATTAGTTAAAATTTGTGTTGTTTTTTtGTATTTTGTTCCTTGGTACTATGTTAAATTTGATTACCATTCTCTGTTAACATGATGGACTCCTGTAAATCCAGCGGAGCACAACCACGACATTCCTAATATGACATCCATTTTTCCCAAATCAATTGCTAAGAAATCTTTCCAAATGGTGAATTTTGGTAAACTCTCCCCAATTCTTACAAATTCCGGGTCTCACGACTGCCGTTCCATCTCCGATTGTTACTCCGAATTTAGTTCCTTTTATAATTGGTAACCTTAAATGATCTACCATTTTCTGACGAATAAAGTTTTGGTTTGCACCACTATCATTTAGAACAATCACTCTTCTTTCCTTTACCTCTCCTCATAGCTTAATAGTCCCTTTTTCCAAAAACTTGAGGATGTTGTGCAGTGAAATTTCCATTTCCTCTGTGACTTCCATCATCTTCAATTCGACTGTTTCAACCTTAGTTTTCTTCCATGGCGACACCTTCATCCGTTTCTTCCTCTTCATTCATTATTAAAAACATTAGTTCATAGCTTTCTTTCACCTTGCAACGATGATCGTGCGAGTACTTTTCATTACACCGGAAACACAATCCCTTATCAAGTTGTGTCTGGAATTTGTTGTCGAAGAGTCTCTTCACCGGCGGCTCTCTTCCTGTAATTCCCATGCAAGGGTATGGATATCTGTCACGTACAAGTTATGTTTCCCTTTGGCCCACTTTTCTCCAGATTAGAACTAGCATTCTTAATGGATTGTGCTTCTTTCTTTCTAGGTTCGTGGGTTCCCGGCTCATTGAAGGCTAATTTTAGGGCAACATCTATCGTTCACCAACTGGGCCTCCTTCATAGACTTCTCTAAGGTTTTCAGATGCGTACTCATGATTTCAGCTTGTAATTTCGGCTCCAATCCCGTCACGAAGGCGTCCATCATACACTCTAATAATCTGTGTAGAATAATTCAAGAACTTCTTCAAATAATCTGTGTAGGTCCCTTCGTGCTTGATTCTTATCACTCTTGCTCCCAAATCCCTTCTTCGGTTGGTCGAAAATGTTCGAACATCCGATTCTTCAAGTCCTCCTACGAAGTCACCTATCTCCTGTTATTGCTCCATTGGAACCAATCCACCTCATCAGGAGTGAAGCTGATCAGTGCAACCTTTACCTTCTCTGCTTCCACCAGATCATTGATTtCAAAGTAATTCTTGACTCTATAAAGCTTTGACTCTGAATTCACCCTTGAAAAACTGGCACCTCAAGTTTCTCGTACTTACGGGATGTCAACTCCATCGATTCCCCACCAAGATAGGATGTCAACTCCGTCTCATCAGCTTTACCTTTCATTTTGAGTCACTTGACCCATCAGACGTACTCGGTTCCTCTTTCCGCTTGATAGAGTTGTTTTCTTTCACATCTTTCGCCAACTTTTCAACAAATTTCATTAGCGAGAGGATCATCTCCTTAATTCCCATAATTTCCTCCTCGCTTCACTGCATTCTCTCTTCTAATTGTTTTtGTGCCATGGATATTGTTTGAGGCAGAATGTTGAGGCTCTCCAACTTGAAACTCAAAAAATCCTGAGACTGTACTCTGAAATAGTATATTGAATAATAAACCAATAGAGTTCCATAAGCTAACACTCAATCAAAGAAGAAAaCAAAAAaGGAAAaTATATAGGAACGATATTGGAAATATCCTAGCTCCTTCGAGAAGGCTGGCAGCTTTTCCCTAAAATGCTCTCAGCAGCTATTTACCAAACAAAACGTAACTTCAGAAATCCCAAAAACATTACTTTTTATACAAGCACCATAGTGGGGCCCTCAGGTGTTTCTTCCTCTCCAATGAGCCTCCGGATGAATACTTCCATGAATTCCCCTTCTTGCCCCTTTCTTTATAAGTATGAAGAATTGGGGACTACACAATAATTCCCTTGACAAAATAACTCGATTCAACTTTCCAAATATAGATTTTTTGACAAAATAGTCGAGTCGAGTTGAGTCGACAATTCAATCCTGCGTGCTAAACAAATTGTGAAGTGAGAGGTGAGCGATGGTTAAAATCAGTAACACTTCAAACTTTTTGTGTTCTGCAGATCCCTGTCCTAGTTTTTTCTCTATGTTCAGTTAATTGATTTTAGATTTTTGTATTCTACAGGGATTCTAAATACCACCGTTAAAGTTTTGTGCTTATCTTTTCGTCTATTTTTGTGTTCCACAGGGATTCTGTTCTATGATTCAGTAATTTACTGATATTGAATTGAAGAATAATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAaGAAAAAaCTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAAAAAATTGTTCTAAAGATGGTACCAACTTTTTGTTTATATTTTTCTGGCCAATTTCTAGCTTAAACTACTGAACATTCTTTCTGTTAGCTGATGTTGTTGCCGGCCAGTTGAGTTGAAAAAGGaCGAATGACAAATAAATAACTTTGCTAGACTTGTTTTt

mRNA sequence

TTATTTTTTAAAAAAATTTCCTTCCTCTTCCTTCTCACGCAAACCCCCCCTCCTATACCCTTCAAGTTTCAGTGGCCGCAACGCCAGCCAACTCCTTTCCTCTCGCCGGCATCTATCTCTATCTCTGCACTGCCACTGTGGCTGAACGCCCACCAGCCAAACGCACCGCCGCCAGCTCTCGCCGCGCAGGATCGAAGTTGCTACCCTATCTGTGTTGTACTTTGTCCCTTCACCGATCAGTTACTGTCTACCGATTGGAAGTCGTTCACTAACTCCTGGCCGTGGGATTTTGTTTGTCCGCCACGCTGCCGCTTGGACCAGTCACGCTACCTCGAGATTCGTTTCGCGCTGCTACCTAATCCAAAGTCGTAGCGCTCAGATCTTGCCACTAGGACCCGAGTCCTGTGTCGAGCTAGTTGCCCTTTCTGTTTGTATGTTGATTGAGCCTCCGGTGTGCTAGGATTCTGTTCTATGATTCAGTAATTTACTGATATTGAATTGAAGAATAATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAAGAAAAAACTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAAAAAATTGTTCTAAAGATGGTACCAACTTTTTGTTTATATTTTTCTGGCCAATTTCTAGCTTAAACTACTGAACATTCTTTCTGTTAGCTGATGTTGTTGCCGGCCAGTTGAGTTGAAAAAGGACGAATGACAAATAAATAACTTTGCTAGACTTGTTTTT

Coding sequence (CDS)

ATGAAGCTGACTGTAGTTGCACAATCCCTTCAAGTCCGTTCCACATTTGCTAAAATAATTGGGTTGTCGCAGGTCCGCTTCTTTCAGCCTGATTTTACTCCTAGAGACCCAAATGCCAAGCCGAAAAAATACAAGTACCCAGCATTTTATGATCCATATGGCCCTAGGCCCCCACCCTCTGATAAAATCATTGAGCTTGCTGAAAGAATTGTAGCACTGCCTGCTGCTGAGCGTTGCCAGATTGGTCCCACACTTGGCGAAAAACTTAGACATCCTAAGCTGCAGGAAATTTCAGTGGATGGCTTGGACATGGGTCCGGAAGGAGGGGCAGCGGCAGGATCTTCCAACGTGGAAGAGAAAAAaGAAAAAaCTGCTTTTGACGTGAAGCTAGAGAAGTTTGATGCTGCTTCAAAAATTAAAGTGATTAAAGAAGTAAGGGCCTTCACTAATTTGGGTCTGAAGGAGGCAAAAGACTTGGTAGAGAAAGTACCTGCGATTCTCAAGCAAGGGGTGACCAAGGAGGAAGCAAACGGTATCATCGAAAAAATCAAAGCTGCTGGAGGAGTTGCTGTGATGGAGTAA

Protein sequence

MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGIIEKIKAAGGVAVME*

Homology

[Close]

BLAST of Cucsa.140390 vs. Swiss-Prot
Match: RL7_PROM1 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) GN=rplL PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-16
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAAAG    +  +EKT F+V LE FDA+SKIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFDASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of Cucsa.140390 vs. Swiss-Prot
Match: RL7_PROMT (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-16
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAAAG    +  +EKT F+V LE F+A+SKIKV+KEVR  T LGL EAK LVE  P  +K
Sbjct: 47  GAAAGGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIK 106

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
           +G TKE+A  + + I+A GG   ++
Sbjct: 107 EGATKEDAEALKKAIEAVGGKVTLK 131

[Close]

BLAST of Cucsa.140390 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1


Query: 101 GLDMGPEGGAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLV 160
           G+ M   G     S+  E  +EKT FDV LE FDAA+KIKV+KEVR  T LGL EAK +V
Sbjct: 40  GVVMAAPGAGGGASAAGEAAEEKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMV 99

Query: 161 EKVPAILKQGVTKEEANGIIEKIKAAGGVAVME 194
           E  P  +K+G +KE+A  + + I+A GG   ++
Sbjct: 100 EAAPKTIKEGASKEDAEALKKAIEAVGGKVTLK 132

[Close]

BLAST of Cucsa.140390 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-15
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1


Query: 110 AAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQ 169
           A+A   +     EKT F+V LE FDA  KI VIKEVRA T LGLKEAKD VE  P  LK 
Sbjct: 42  ASAAGESAAAVAEKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKT 101

Query: 170 GVTKEEANGIIEKIKAAGGVAVM 193
           GV+K+EA  + +K++AAG   ++
Sbjct: 102 GVSKDEAEELKKKLEAAGATIIL 124

[Close]

BLAST of Cucsa.140390 vs. Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-15
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           GAAAG    E  +EKT FDV LE FDAA+KIKV+K VR  T LGL +AK LVE  P  +K
Sbjct: 47  GAAAGGGGGEVAEEKTEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIK 106

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
           +G++K+EA  + ++I+  GG   ++
Sbjct: 107 EGISKDEAEALKKEIEEVGGKVTLK 131

[Close]

BLAST of Cucsa.140390 vs. TrEMBL
Match: A0A0A0L907_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G623960 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 2.0e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. TrEMBL
Match: A0A067KFQ9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11471 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.4e-79
Identity = 150/193 (77.72%), Postives = 167/193 (86.53%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           M+   +A+S++ RSTF +I GL QVRFFQ DF PRDPN KPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MRFIALARSIRGRSTFQEITGLLQVRFFQHDFVPRDPNTKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI ALP  E+ QIGPTL  KL+HPKLQ IS +G+D+GP+G  A G + VEEK
Sbjct: 61  DKIIQLAERIAALPLEEQRQIGPTLQRKLKHPKLQSISTEGMDLGPQGAQATGGTKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR FT+LGLKEAKDLVEKVP +LKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRTFTSLGLKEAKDLVEKVPVLLKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. TrEMBL
Match: A0A059CHD8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02092 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.5e-77
Identity = 150/194 (77.32%), Postives = 163/194 (84.02%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKL +V +S  VR     I G  Q R FQ DF PRDP AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 6   MKLDLVVRSAYVRLGLRGITGPLQTRSFQHDFVPRDPKAKPKKYKYPAFYDPYGPRPPPS 65

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI  LPA ER QIGP L E+L+HPK+Q IS +G+D+GP+GGA AGS+  EEK
Sbjct: 66  DKIIQLAERIAGLPAEERAQIGPALQERLKHPKMQTISTEGMDLGPQGGAGAGSAKAEEK 125

Query: 121 K-EKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGI 180
           K EKTAFDVKLEKFDAA+KIKVIKEVRAFTNLGLKEAKDLVEK P +LKQGVTKEEANGI
Sbjct: 126 KAEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPILLKQGVTKEEANGI 185

Query: 181 IEKIKAAGGVAVME 194
           IEKIKAAGGVAVME
Sbjct: 186 IEKIKAAGGVAVME 199

[Close]

BLAST of Cucsa.140390 vs. TrEMBL
Match: M5WNH8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011860mg PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.9e-75
Identity = 144/193 (74.61%), Postives = 160/193 (82.90%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           M+L  +A+S + R T  +  G  Q R FQPDF PRDP+AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MRLVALARSFRARPTLPETTGPLQFRCFQPDFAPRDPDAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI AL   ERCQ+GPTLGE+LR PKLQ IS +GLD+G +GG A  S   E+K
Sbjct: 61  DKIIQLAERIAALAPEERCQLGPTLGERLRLPKLQPISTEGLDLGSQGGPAGASKAEEKK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
            EKTAFDVKLEKFD A+KIKVIKEVR FT+LGLKEAKDLVEKVP +LKQGVTKEEAN II
Sbjct: 121 VEKTAFDVKLEKFDTAAKIKVIKEVRTFTSLGLKEAKDLVEKVPCVLKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. TrEMBL
Match: B9RB19_RICCO (50S ribosomal protein L7/L12, putative OS=Ricinus communis GN=RCOM_1510530 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.0e-74
Identity = 144/193 (74.61%), Postives = 160/193 (82.90%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MK   + +S+  R T  +I G  QVRFFQ DF PRDP   P+KYKYPAFYDPYGPRPPPS
Sbjct: 1   MKFVPLLRSVSTRYTLREITGPLQVRFFQHDFVPRDPKINPRKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKI++LAERI ALP  ER QIGPTL  KL HPKLQ IS +G+D+G +G  AA ++ VEEK
Sbjct: 61  DKIVQLAERIAALPPEERRQIGPTLHYKLNHPKLQTISTEGMDLGAQGSQAAVAAKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVRAFTNLGLKEAKDLVEK PA+LKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPAVLKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVA+ME
Sbjct: 181 EKIKAAGGVAIME 193

[Close]

BLAST of Cucsa.140390 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-60
Identity = 127/193 (65.80%), Postives = 144/193 (74.61%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKL  + ++++ R    ++I   QVRF Q D   +   AKPKKYKYP+ YDPYGPRP PS
Sbjct: 1   MKLISLVRNVRSRQCQPEVIWSVQVRFLQQDSVSK---AKPKKYKYPSVYDPYGPRPQPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
            KI+ELAERI AL   ER QIGP L E LR PK Q IS DG+    + GA     NVEEK
Sbjct: 61  SKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAG----NVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKF+A+ KIKVIKEVR FT+LGLKEAK+LVEKVPAILKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
            KIKA GG+AVME
Sbjct: 181 AKIKAVGGIAVME 186

[Close]

BLAST of Cucsa.140390 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-29
Identity = 73/165 (44.24%), Postives = 103/165 (62.42%), Query Frame = 1


Query: 36  DPNAKPKKYKYPAFYDPYGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQ 95
           D    P  Y  PA +DP   R PP+D++  L + I +L   E  ++G  + +K    +L 
Sbjct: 45  DQRKLPTDYD-PATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTELP 104

Query: 96  EISV------DGLDMGPEGGAAAGSSNVEEKK-EKTAFDVKLEKFDAASKIKVIKEVRAF 155
            ++V       G+ +G  GG  + S   EE K EKT F++KLE F+A++KIK+IKE+R+F
Sbjct: 105 TVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSF 164

Query: 156 TNLGLKEAKDLVEKVPAILKQGVTKEEANGIIEKIKAAGGVAVME 194
           T+LGLKEAK LVEK PAILK G++KEE   I+EK+KA G   V+E
Sbjct: 165 TDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of Cucsa.140390 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 108 GGAAAGSSNVEEKK-EKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAI 167
           G     S++ E K  EKT FDVKLEKF+AASKIKVIKE+RAFT+LGLKEAK LVEK P I
Sbjct: 81  GSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVI 140

Query: 168 LKQGVTKEEANGIIEKIKAAGGVAVME 194
           +K G+TKEEA  I+EK+KA G +  +E
Sbjct: 141 VKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]

BLAST of Cucsa.140390 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 107.8 bits (268), Expect = 7.4e-24
Identity = 63/145 (43.45%), Postives = 86/145 (59.31%), Query Frame = 1


Query: 53  YGPRPPPSDKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEIS--VDGLDMGPEGGA 112
           Y      S+ + ++   +  L   E   +   L +KL   +L  ++  + G+ +   G +
Sbjct: 35  YSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGAS 94

Query: 113 --AAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 172
             A G    ++K+ KTAFDV L+ +DA SKIKVIKEVR  T LGLKEAKDLVEK P +LK
Sbjct: 95  KSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLK 154

Query: 173 QGVTKEEANGIIEKIKAAGGVAVME 194
           +GV+KEEA  IIEK+KA G    ME
Sbjct: 155 KGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of Cucsa.140390 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-18
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 109 GAAAGSSNVEEKKEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILK 168
           G + G +N   K EKT F+VKLE F+A +KIK+IKEVR    +GLKEA  LV K P +LK
Sbjct: 7   GQSGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLK 66

Query: 169 QGVTKEEANGIIEKIKAAGGVAVME 194
            G++KEE   ++EK+ A G  AV++
Sbjct: 67  TGLSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of Cucsa.140390 vs. NCBI nr
Match: gi|778682047|ref|XP_011651634.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 2.9e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK
Sbjct: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. NCBI nr
Match: gi|659069543|ref|XP_008450561.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 357.8 bits (917), Expect = 1.2e-95
Identity = 183/193 (94.82%), Postives = 184/193 (95.34%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKLTVVA+SLQ RST  KIIGLSQVRFFQPDFTPRDP AKPKKYKYP FYDPYGPRPPPS
Sbjct: 1   MKLTVVARSLQARSTLTKIIGLSQVRFFQPDFTPRDPKAKPKKYKYPPFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII LAERI ALPAAER QIGPTLGEKLRHPKLQEISVDGLDMG EGGAAAGSSNVEEK
Sbjct: 61  DKIIALAERIAALPAAERSQIGPTLGEKLRHPKLQEISVDGLDMGSEGGAAAGSSNVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII
Sbjct: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. NCBI nr
Match: gi|802652306|ref|XP_012080061.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas])

HSP 1 Score: 303.1 bits (775), Expect = 3.4e-79
Identity = 150/193 (77.72%), Postives = 167/193 (86.53%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           M+   +A+S++ RSTF +I GL QVRFFQ DF PRDPN KPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MRFIALARSIRGRSTFQEITGLLQVRFFQHDFVPRDPNTKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI ALP  E+ QIGPTL  KL+HPKLQ IS +G+D+GP+G  A G + VEEK
Sbjct: 61  DKIIQLAERIAALPLEEQRQIGPTLQRKLKHPKLQSISTEGMDLGPQGAQATGGTKVEEK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
           KEKTAFDVKLEKFDAA+KIKVIKEVR FT+LGLKEAKDLVEKVP +LKQGVTKEEAN II
Sbjct: 121 KEKTAFDVKLEKFDAAAKIKVIKEVRTFTSLGLKEAKDLVEKVPVLLKQGVTKEEANEII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

[Close]

BLAST of Cucsa.140390 vs. NCBI nr
Match: gi|702325563|ref|XP_010053490.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 295.0 bits (754), Expect = 9.3e-77
Identity = 150/194 (77.32%), Postives = 163/194 (84.02%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           MKL +V +S  VR     I G  Q R FQ DF PRDP AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 6   MKLDLVVRSAYVRLGLRGITGPLQTRSFQHDFVPRDPKAKPKKYKYPAFYDPYGPRPPPS 65

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKII+LAERI  LPA ER QIGP L E+L+HPK+Q IS +G+D+GP+GGA AGS+  EEK
Sbjct: 66  DKIIQLAERIAGLPAEERAQIGPALQERLKHPKMQTISTEGMDLGPQGGAGAGSAKAEEK 125

Query: 121 K-EKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGI 180
           K EKTAFDVKLEKFDAA+KIKVIKEVRAFTNLGLKEAKDLVEK P +LKQGVTKEEANGI
Sbjct: 126 KAEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKDLVEKAPILLKQGVTKEEANGI 185

Query: 181 IEKIKAAGGVAVME 194
           IEKIKAAGGVAVME
Sbjct: 186 IEKIKAAGGVAVME 199

[Close]

BLAST of Cucsa.140390 vs. NCBI nr
Match: gi|658057652|ref|XP_008364609.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica])

HSP 1 Score: 291.2 bits (744), Expect = 1.3e-75
Identity = 145/193 (75.13%), Postives = 163/193 (84.46%), Query Frame = 1


Query: 1   MKLTVVAQSLQVRSTFAKIIGLSQVRFFQPDFTPRDPNAKPKKYKYPAFYDPYGPRPPPS 60
           M+L  +A+S + R T  +  G  Q R FQPDF PRDP+AKPKKYKYPAFYDPYGPRPPPS
Sbjct: 1   MRLIALARSFRARPTLPETTGPLQFRCFQPDFVPRDPSAKPKKYKYPAFYDPYGPRPPPS 60

Query: 61  DKIIELAERIVALPAAERCQIGPTLGEKLRHPKLQEISVDGLDMGPEGGAAAGSSNVEEK 120
           DKI++LAERI AL   ER Q+GPTL E+LRHPKLQ IS +G+D+G +GGAAAGS   E+K
Sbjct: 61  DKIVQLAERIAALAPEERRQLGPTLAERLRHPKLQPISTEGMDLGSQGGAAAGSKAEEKK 120

Query: 121 KEKTAFDVKLEKFDAASKIKVIKEVRAFTNLGLKEAKDLVEKVPAILKQGVTKEEANGII 180
            EKTAFDVKLEKFDAA+KIKVIKEVR FT+LGLKEAKDLVEKVP +LKQGVTKEEAN II
Sbjct: 121 VEKTAFDVKLEKFDAAAKIKVIKEVRTFTSLGLKEAKDLVEKVPCVLKQGVTKEEANDII 180

Query: 181 EKIKAAGGVAVME 194
           EKIKAAGGVAVME
Sbjct: 181 EKIKAAGGVAVME 193

The following BLAST results are available for this feature:

BLAST of Cucsa.140390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL7_PROM1	1.1e-16	52.94	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL1A) GN=rplL ...	[more]
RL7_PROMT	3.1e-16	51.76	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL ...	[more]
RL7_PROM4	2.0e-15	47.31	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl...	[more]
RL7_LIBAF	2.0e-15	53.01	50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1	[more]
RL7_SYNPX	3.5e-15	50.59	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 S...	[more]

BLAST of Cucsa.140390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L907_CUCSA	2.0e-102	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G623960 PE=4 SV=1	[more]
A0A067KFQ9_JATCU	2.4e-79	77.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11471 PE=4 SV=1	[more]
A0A059CHD8_EUCGR	6.5e-77	77.32	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02092 PE=4 SV=1	[more]
M5WNH8_PRUPE	7.9e-75	74.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011860mg PE=4 SV=1	[more]
B9RB19_RICCO	1.0e-74	74.61	50S ribosomal protein L7/L12, putative OS=Ricinus communis GN=RCOM_1510530 PE=4 ...	[more]

BLAST of Cucsa.140390 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06040.1	1.7e-60	65.80	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT1G70190.1	1.2e-29	44.24	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ...	[more]
AT4G37660.1	5.7e-24	64.37	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT4G36420.1	7.4e-24	43.45	Ribosomal protein L12 family protein	[more]
AT2G03130.1	3.6e-18	50.59	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]

BLAST of Cucsa.140390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682047\|ref\|XP_011651634.1\|	2.9e-102	100.00	PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis sativus]	[more]
gi\|659069543\|ref\|XP_008450561.1\|	1.2e-95	94.82	PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo]	[more]
gi\|802652306\|ref\|XP_012080061.1\|	3.4e-79	77.72	PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]	[more]
gi\|702325563\|ref\|XP_010053490.1\|	9.3e-77	77.32	PREDICTED: 50S ribosomal protein L12, chloroplastic [Eucalyptus grandis]	[more]
gi\|658057652\|ref\|XP_008364609.1\|	1.3e-75	75.13	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013823	Ribosomal_L7/L12_C
IPR014719	Ribosomal_L7/12_C/ClpS-like
IPR013823	Ribosomal_L7/L12_C
IPR014719	Ribosomal_L7/12_C/ClpS-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006508	proteolysis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.140390.1	Cucsa.140390.1	mRNA
Cucsa.140390.2	Cucsa.140390.2	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 127..187 score: 1.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 126..189 score: 4.7
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 120..192 score: 8.9
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 122..192 score: 1.24
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 30..193 score: 7.4
None	No IPR available	PANTHER	PTHR24089:SF314	SUBFAMILY NOT NAMED	coord: 30..193 score: 7.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.140390	Csa3G623960	Cucumber (Chinese Long) v2	cgycuB204
Cucsa.140390	CSPI03G27160	Wild cucumber (PI 183967)	cgycpiB207
Cucsa.140390	CsaV3_3G028630	Cucumber (Chinese Long) v3	cgycucB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.140390	Cucumber (Chinese Long) v3	cgycucB211
Cucsa.140390	Watermelon (97103) v2	cgywmbB237
Cucsa.140390	Watermelon (97103) v2	cgywmbB238
Cucsa.140390	Wax gourd	cgywgoB276
Cucsa.140390	Cucumber (Gy14) v1	cgycgyB090
Cucsa.140390	Cucurbita maxima (Rimu)	cgycmaB0392
Cucsa.140390	Cucurbita maxima (Rimu)	cgycmaB0393
Cucsa.140390	Cucurbita moschata (Rifu)	cgycmoB0390
Cucsa.140390	Cucurbita moschata (Rifu)	cgycmoB0391
Cucsa.140390	Cucurbita moschata (Rifu)	cgycmoB0392
Cucsa.140390	Wild cucumber (PI 183967)	cgycpiB206
Cucsa.140390	Cucumber (Chinese Long) v2	cgycuB203
Cucsa.140390	Melon (DHL92) v3.5.1	cgymeB234
Cucsa.140390	Melon (DHL92) v3.5.1	cgymeB235
Cucsa.140390	Watermelon (Charleston Gray)	cgywcgB238
Cucsa.140390	Watermelon (Charleston Gray)	cgywcgB239
Cucsa.140390	Watermelon (97103) v1	cgywmB248
Cucsa.140390	Watermelon (97103) v1	cgywmB246
Cucsa.140390	Watermelon (97103) v1	cgywmB249
Cucsa.140390	Cucurbita pepo (Zucchini)	cgycpeB0379
Cucsa.140390	Cucurbita pepo (Zucchini)	cgycpeB0380
Cucsa.140390	Cucurbita pepo (Zucchini)	cgycpeB0381
Cucsa.140390	Bottle gourd (USVL1VR-Ls)	cgylsiB225
Cucsa.140390	Bottle gourd (USVL1VR-Ls)	cgylsiB226
Cucsa.140390	Melon (DHL92) v3.6.1	cgymedB231
Cucsa.140390	Melon (DHL92) v3.6.1	cgymedB232
Cucsa.140390	Silver-seed gourd	carcgyB0078
Cucsa.140390	Silver-seed gourd	carcgyB0275
Cucsa.140390	Silver-seed gourd	carcgyB0884