Cucsa.125520 (gene) Cucumber (Gy14) v1

NameCucsa.125520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionF21D18.7
Locationscaffold01004 : 261312 .. 263960 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCATTGCAGAATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAaCACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGTAATATACGCCATGCTTCTCTCTGTTCTGTTCTTTATGTTTTTTtACTTTCTGTTGTTGGAAAAGTTAGTGTTTAGTTGAATGTGTCGAAATGTCAGTGATTCGTGTTAGAAATTGAGTGTCTGAAAATGATGGGTCGTTCCAAGCATTTCAAATTCCTTATTCGTACTTTACAAATTGTTGGGTTTCGTTGCTACTTCAACTATATCATCATTGACCTGATTTTTCTTATCATCCATTTCTGAACTTCAATGTTCTTATGATTAAGTACCATGTTCTTGGTTTTCATGGATTCTAATCTCTCAGAACTATTAGCCAGAACCCAGGAAACAAATAAGGTATGAGATTATGAATCTAAAAAGAATAGTTTTCATCGCACCATTATATGAAAAAAAGTGTGTTTGAGAAGTGAATGTTCTACTATGGGATGCTGGAATTGAAGACTAAAGTTAAGATTGATAAGGTCAACAGAACCTCCACCTATCTTCTACCTTGGCTATAAACTCGAACTACCCAAATGGTCTCGTACTAATTAAGATAATTGTTCTCACTTATGTACTAATGATTGTACTCATGTTTGCCCTAAAGATAATCGATAAAGAAGGAACCATACCCAGCCAAGCCTAAAGCCACTGAGCAATTCTCTACCTTCATCCTTTCCTACATTTCAATTTACGAATCACCTTGACAACTTTCACCcTGATAGACCATGCTGATCATTCCTGTTCTCTGCCTATTAAGTTAACGTTCCTGCCCAGCTGATGCAAAGGTTTTCATTATGGGGATAGTATATGCTGTATTAAACTTTACCGGGAAAGCACTGCTATAGTACTACGATTTTATATGAGAAAGAGACGCTTGAAAAGCTTATATGCGAAAGGAAGCAATTTCTCTTATTGGAAGCTTAAGAAAGGCACTCCAATTGAAGTTGATTGTGATGGCAGAATAGTCATAGATGATAGGAGGAGTTGGAAGGGGAAGCTAAAAGACCATTGAACTTTTCCAATTCTTGAACGTCTTCCCCATATTTCTCCCTATTATTAGAATCTGTTAATTTCTTTCTTTCTAGCCACCAGCCACTATACCTAATCCTGGACTGCATTTTGCTTTAGGATCTCTCTCCTTTCGTAGTTGGTTCAGCACAGAAGCTGCATCTAACTATCCTTGGTCCGTAAATAAAAAaCCGAGAAAATGATGATGTAGAGGAAAACTAGTAAAAGGCTTTGTGTCTTCTTTGGATTCCTACATAGTATGCACCAACTTAACTTGGTTGCAAGATCAGCAATTGTCATCTTCAAATTGGATTTTTGTATCTCCATTGTGTTTAGGTCAAGACACACAAACCAACAATATCTCTCGATTTTTATAAATTGGTTACCTTTCCAATTTGATAGTGATAAGTTTCTAGGTAGTGAGGAAACCAGTCTGCTATCTAGCTGTCATTGATCAACAGAAATGCGTTGCTTTCGTCAACCTTATGATAATATTACCCTGTTGACGATGACTCTAGTATGTATTTCGTAACTTTTGGGGAGTTATGAAGATCTTTGCTCGAGAATTGGTACTAAAATGTCTGCTTGTAGTACAAACGGATTGTAATTTCAGATAGATTGGAAGATAAACAGCACGAGTAGATTTTTTtAAAAAAAaGATTCAAATGCATGTTTGATGCAAAACTTTtACCCTTTTTCCTGGCAGAGTTCTTGCATAACAATGTTGGGAATCTATTAAACGATTGCCTATAAATTAATAACTGTAATGTAATGTGAGAGTTTTAAGTCTCGATTCAGATTATGTCAAATCCTATCCATATTATTTCATTCTCCCATGCATATTATTTAGTTATTGAACACATGAATCAAATACTCTTGTGGATAGTCTTTTTTCAAGTTTGATTACAAAAAGAAGTGTTTGTTTAGAAAGAGTTTTAAGTGTCTAAAAAGTCATTTTGAATATGTTCAAGTCTATTATTGTACAGGCTAGCTTTTACAGATTTATCCATTGATCCCTTTTTTATGGACCATACAGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATGGTTTAATGTTAGCTTCACTCAAGTTTTCCAGGTTTTGTTTCCTTTGTTCACAAATTGGCTGAAGAATCGAACTCCATTAAGATTTGCATATTTCTATGCTCAATGCTAAAAAAAGTAGTGCAGAATATAAGGAATTAGATTTTtCCTTTTTCAGGCACGTATTATCAACTTCAAAGTCAGATATCTTATTCCCTACTCTCACATTTTCAGAAGGAAAAAaGAAAaGAAATCTTTTAGTTTGCCATTAAATGCTCTAG

mRNA sequence

GCTTCATTGCAGAATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAACACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATGGTTTAATGTTAGCTTCACTCAAGTTTTCCAGGTTTTGTTTCCTTTGTTCACAAATTGGCTGAAGAATCGAACTCCATTAAGATTTGCATATTTCTATGCTCAATGCTAAAAAAAGTAGTGCAGAATATAAGGAATTAGATTTTTCCTTTTTCAGGCACGTATTATCAACTTCAAAGTCAGATATCTTATTCCCTACTCTCACATTTTCAGAAGGAAAAAAGAAAAGAAATCTTTTAGTTTGCCATTAAATGCTCTAG

Coding sequence (CDS)

ATGGATTCGGCCTCCAAATTCCTTCGTAGTTTAGCTAATGCCACCAACAAAAaCACCGTTATCAACGTCTGTTTAGTCGTTTCCTTCGCCGCACTGACCGCAAGGTCAATCAAGCAGGAGAGACAAATTGAAGCTCTGGAAACCGAGAAAAATTCACTTCTCAATTCCAATAAAGCGTTGAAGAAAACCATGTGGGATTGGAAGCAACAGCTATTCGCCGAAGCCTCAACCGAATCTGCTTTAGTCCCTCTTGCCAGGATCAAAGCTATCTATGGCGAAGCTCCCATTTCCCCTTCCGGAGCAGTAAATGCCACAACCGAAGATGCAACTTCACGAAGCTCCAAACTTATGGTTTAA

Protein sequence

MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV*
BLAST of Cucsa.125520 vs. TrEMBL
Match: A0A0A0L380_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G364020 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.5e-47
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAV 103
           KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG +
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGNI 102

BLAST of Cucsa.125520 vs. TrEMBL
Match: B9RJ81_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032120 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-31
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           M+ A++ +   + A N N VINVCLV SFAAL ARSI Q++ I+ALE EK++L+ SNKA+
Sbjct: 1   MEFANRLVGLASRAANSNAVINVCLVGSFAALCARSIYQQKDIQALEAEKDTLIKSNKAM 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSS 115
           KKTMWDWKQQLFAEA +++ALVPLAR+KAIYG+AP SPSG  NA  EDA S ++
Sbjct: 61  KKTMWDWKQQLFAEAESDAALVPLARLKAIYGDAPSSPSG--NAVKEDAKSSTN 112

BLAST of Cucsa.125520 vs. TrEMBL
Match: A0A067GZE9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-31
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MD A+K       A N NTV+N CL+ SFAALT RS+KQ+  IE LE+EK SL+ +NK L
Sbjct: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           KK MWDWKQQL+AEA+TESALVPLAR+KAIYG+ P     A  A  EDA S ++KL++
Sbjct: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAGEAAKEDAKSSATKLVI 118

BLAST of Cucsa.125520 vs. TrEMBL
Match: A0A067GPS0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-31
Identity = 71/119 (59.66%), Postives = 88/119 (73.95%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MD A+K       A N NTV+N CL+ SFAALT RS+KQ+  IE LE+EK SL+ +NK L
Sbjct: 1   MDLANKLTNLAIKAINSNTVVNTCLIASFAALTLRSVKQQNDIEGLESEKESLVKANKDL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPI-SPSGAVNATTEDATSRSSKLMV 119
           KK MWDWKQQL+AEA+TESALVPLAR+KAIYG+ P  +P  A  A  EDA S ++KL++
Sbjct: 61  KKRMWDWKQQLYAEATTESALVPLARLKAIYGDVPTPTPPAAGEAAKEDAKSSATKLVI 119

BLAST of Cucsa.125520 vs. TrEMBL
Match: E9JFW5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12086 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           M+ A++ + +   A N NTVINVCLV +F AL  RS+  ++ IEALE EK SL+ SNKAL
Sbjct: 1   MEFANRLVAAATKAANNNTVINVCLVGAFTALCVRSVNHQKDIEALEAEKESLIKSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           +KTMWDWKQ+LFAEA ++SALVPLAR+KAIYGEAP  P+G  +A  EDA   +SKL++
Sbjct: 61  RKTMWDWKQELFAEAHSDSALVPLARLKAIYGEAPSHPTG--DAGKEDAKLPASKLVI 116

BLAST of Cucsa.125520 vs. TAIR10
Match: AT1G48200.1 (AT1G48200.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-24
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 1

Query: 4   ASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKALKKT 63
           A+K    L+ A N N VIN CL VSF  L  RS KQ++ +EAL  +K SL  SNKA+K T
Sbjct: 2   ANKIAMFLSEAMNNNAVINTCLGVSFVVLGLRSDKQQKYVEALAEQKESLFKSNKAMKLT 61

Query: 64  MWDWKQQLFAEAST--ESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           MW+WKQQLFAEA++   +A+VPL+ +KAIYGE   + + + +   ED+   + K+M+
Sbjct: 62  MWEWKQQLFAEAASAGNAAVVPLSTLKAIYGEVTTTTNQSGDTAKEDSKVSTPKIMI 118

BLAST of Cucsa.125520 vs. NCBI nr
Match: gi|449468077|ref|XP_004151748.1| (PREDICTED: uncharacterized protein LOC101219754 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.2e-56
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 118

BLAST of Cucsa.125520 vs. NCBI nr
Match: gi|659086865|ref|XP_008444149.1| (PREDICTED: uncharacterized protein LOC103487583 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 106/118 (89.83%), Postives = 111/118 (94.07%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MD ASKFLR L+N  NKNT+INVCLV SFAAL+ARSIKQERQIEALE EKNSLL+SNKAL
Sbjct: 1   MDLASKFLRILSNDNNKNTLINVCLVFSFAALSARSIKQERQIEALEAEKNSLLDSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           KKTMWDWKQQLFAEAST+SALVPLARIKAIYGEAPISPSGAVNA TEDATSRSSKLMV
Sbjct: 61  KKTMWDWKQQLFAEASTQSALVPLARIKAIYGEAPISPSGAVNAATEDATSRSSKLMV 118

BLAST of Cucsa.125520 vs. NCBI nr
Match: gi|700199413|gb|KGN54571.1| (hypothetical protein Csa_4G364020 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-46
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL
Sbjct: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAV 103
           KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSG +
Sbjct: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGNI 102

BLAST of Cucsa.125520 vs. NCBI nr
Match: gi|1000977483|ref|XP_015571458.1| (PREDICTED: uncharacterized protein LOC8274113 [Ricinus communis])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 75/118 (63.56%), Postives = 94/118 (79.66%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           M+ A++ +   + A N N VINVCLV SFAAL ARSI Q++ I+ALE EK++L+ SNKA+
Sbjct: 1   MEFANRLVGLASRAANSNAVINVCLVGSFAALCARSIYQQKDIQALEAEKDTLIKSNKAM 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSSKLMV 119
           KKTMWDWKQQLFAEA +++ALVPLAR+KAIYG+AP SPSG  NA  EDA S  SKL++
Sbjct: 61  KKTMWDWKQQLFAEAESDAALVPLARLKAIYGDAPSSPSG--NAVKEDAKSSVSKLVI 116

BLAST of Cucsa.125520 vs. NCBI nr
Match: gi|223546886|gb|EEF48383.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 142.1 bits (357), Expect = 6.2e-31
Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 1

Query: 1   MDSASKFLRSLANATNKNTVINVCLVVSFAALTARSIKQERQIEALETEKNSLLNSNKAL 60
           M+ A++ +   + A N N VINVCLV SFAAL ARSI Q++ I+ALE EK++L+ SNKA+
Sbjct: 1   MEFANRLVGLASRAANSNAVINVCLVGSFAALCARSIYQQKDIQALEAEKDTLIKSNKAM 60

Query: 61  KKTMWDWKQQLFAEASTESALVPLARIKAIYGEAPISPSGAVNATTEDATSRSS 115
           KKTMWDWKQQLFAEA +++ALVPLAR+KAIYG+AP SPSG  NA  EDA S ++
Sbjct: 61  KKTMWDWKQQLFAEAESDAALVPLARLKAIYGDAPSSPSG--NAVKEDAKSSTN 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L380_CUCSA9.5e-4798.04Uncharacterized protein OS=Cucumis sativus GN=Csa_4G364020 PE=4 SV=1[more]
B9RJ81_RICCO4.3e-3163.16Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1032120 PE=4 SV=1[more]
A0A067GZE9_CITSI5.6e-3159.32Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1[more]
A0A067GPS0_CITSI5.6e-3159.66Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033431mg PE=4 SV=1[more]
E9JFW5_JATCU2.8e-3059.32Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12086 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G48200.12.7e-2447.86 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449468077|ref|XP_004151748.1|4.2e-56100.00PREDICTED: uncharacterized protein LOC101219754 [Cucumis sativus][more]
gi|659086865|ref|XP_008444149.1|1.3e-4989.83PREDICTED: uncharacterized protein LOC103487583 [Cucumis melo][more]
gi|700199413|gb|KGN54571.1|1.4e-4698.04hypothetical protein Csa_4G364020 [Cucumis sativus][more]
gi|1000977483|ref|XP_015571458.1|1.9e-3263.56PREDICTED: uncharacterized protein LOC8274113 [Ricinus communis][more]
gi|223546886|gb|EEF48383.1|6.2e-3163.16conserved hypothetical protein [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.125520.1Cucsa.125520.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 29..63
scor
NoneNo IPR availablePANTHERPTHR38355FAMILY NOT NAMEDcoord: 2..118
score: 3.0