Cucsa.123730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.123730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Tic22-like family protein
Location	scaffold01000 : 830873 .. 832215 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTTTGTTTTGCCCCTGGTTTTCCTCCCATTTGTGTAGAGTGAAATGATAATGAAGAAGTGAGGAAAACTTGTCGCAATCTATTTTGTGCTTCCCCTATTTAGTGGAATTTGTGTTTGATGTTTTCGATAATTTAATGAACTAGAAGTAGGTTTACCATTCTAATTCTTTTGTTCAAATCTGATGTTTTTATTGCAATATGATATCTGATTATAGTGAATTTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTACCTTACTTGTATTATCAAATTTTTACTTCTTGAGTACCGAACTTTTTCCCTGCTGCAGTTATTTTGTTTTCCCCACTTAACGTTCAACCGTTTAGTGGAATTCCATAGTGAAGGTTAGTGTGGCCGGTAGGTAACTGCATTTATAGGCTTGTGCTAGTACTCCTGATCAATGATATGACAATGAGAGCCGAGAGGATCATTTACCTGGTGAGATAACTCCGTTTTATTTTtAGTCATCTGGCTGGTGAAAATTTTCAAATCTAAGGCCTATTAATTTGAATGTATCTAAATTTGTTGGGTTGGAAGATTTCAAATAAATAGGTTGAACTTATAAAACACAGAATTTAAATATGATGGTGAAGTGAAGTATCTGTTTTGCCTTTTCTTTTTCTTCCTTTATTAGGGGGGCGTGGGGCAGGGTTTGAAATGTAATAATTTTGTGAGAAGGTACTCAATTAGAATTCAACTTGATTTTTCTATTGCCCGTGTATTATCTATTGCCAATAACCGGGACCTCCTTCAGTTTCTCTCTTTCTTCTGTACTTCAGTAGATTTATTTGTTTCTGTTCGTTTTTtATGATTCACAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA

mRNA sequence

ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA

Coding sequence (CDS)

ATGGAGATCCCAAAACCCTACCCGCATTCGAATCCTCTCATATCCGTTTCTTCTTTCATCCACCATCACTGTACCAAACTTGGAGCCGAGCTTTCCAATCGTCTCGAAGACACCAAACGCTTCGCCGGAACTCTCGCCAGAAGATGGCCGGCCCAGGCGAATTGGCGATCATTTCCTACACCTGCTTTCGCATCCCTTGCGCGCCACACGCATGCCTTGGCTGCCACTCTTAGCCCCGACCAAGTGGCGAAGTCCCTCGTCGGCACGGCGGTATACACTGTTAGCAATTCAAATAATGAGTTTGTGCTCATTTCTGATCCCAATGGTGCCAAGTCAATTGGGTTGCTGTGCTTTCGCAAGGAAGATGCCGAGACCTTTTTGGCTCAGGTCCGATCGAGGAAAAGAGAACTAAGAAGTAATGCCAAGGTTGTACCTATTACCCTTGACCAGGTATATTTGTTGAAAGTTGAAGGTATTGCATTCCGCTTTTTGCCAGATCCTATTCAGCTTAAGAATGCGTTAGAGGCAA

Protein sequence

MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALEAX

Homology

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BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TIC22_ARATH (Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 1


Query: 11  NPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPA-FASLARH 70
           NP +S SSFIHH CT+  ++LS R+EDTKRFA TLA R        S PTP  FAS+++ 
Sbjct: 8   NPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRR------FSLPTPPPFASVSQS 67

Query: 71  THAL-AATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLA 130
                  TLSP  VAK+L GT+V+TVSN+NNEFVLISDP G KSIGLLCFR+EDAE FLA
Sbjct: 68  KSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLA 127

Query: 131 QVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           Q R R+REL++NAKVVPITLDQVYLLKVEGI+FRFLPDPIQ+KNALE
Sbjct: 128 QARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALE 168

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BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TIC22_PEA (Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.0e-49
Identity = 108/165 (65.45%), Postives = 125/165 (75.76%), Query Frame = 1


Query: 11  NPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPAFASLARHT 70
           NPL+S S FI+HH       L+ RLE+TKR AGTL      Q++ R+ P           
Sbjct: 8   NPLLSFSRFINHHSN----HLATRLEETKRLAGTLI-----QSHTRTKP----------- 67

Query: 71  HALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLAQV 130
            A AATL+P+ VAKSL GT+VYTVSNS+NEFVL+SD  GAKSIGLLCFR+EDAE FLAQV
Sbjct: 68  -AFAATLTPNHVAKSLAGTSVYTVSNSDNEFVLMSDAEGAKSIGLLCFRQEDAEAFLAQV 127

Query: 131 RSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           RSRK+E R  AKVVPITLDQVY+LKVEGIAFRFLPDP+Q+KNALE
Sbjct: 128 RSRKKEFRGGAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALE 151

[Close]

BLAST of Cucsa.123730 vs. Swiss-Prot
Match: TI22L_ARATH (Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-18
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 77  LSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLAQVRSRKRE 136
           LS D + + L G  VY +SNSN EFVL+S  +  KS+GLL  ++EDAET L +++S    
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 137 LR-SNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           +R   +KVV + L +V+ LKV G+AFR +P+  Q+KNAL+
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALK 209

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BLAST of Cucsa.123730 vs. TrEMBL
Match: A0A0A0L097_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639760 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 6.9e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT
Sbjct: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60

Query: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120
           PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK
Sbjct: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE
Sbjct: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 175

[Close]

BLAST of Cucsa.123730 vs. TrEMBL
Match: M5XL62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009744mg PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 2.4e-62
Identity = 134/178 (75.28%), Postives = 147/178 (82.58%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWR--SF 60
           ME PKPY  SNPL+S+S+FIH +C +LGAELS+RLEDTKR AGTLA      A  R  S 
Sbjct: 1   MESPKPYGRSNPLLSLSTFIHQNCLQLGAELSSRLEDTKRLAGTLAGNLAPSARRRMCSA 60

Query: 61  PT-PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLC 120
           P  P FA L++  HALAAT+S D VAKSL GTAVYTVSNSNNEFVLISDPN AKSIGLLC
Sbjct: 61  PVAPPFAWLSQSNHALAATISSDHVAKSLAGTAVYTVSNSNNEFVLISDPNEAKSIGLLC 120

Query: 121 FRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           FR EDAE FLAQVRSR RELRS AKVVPITLDQVY+LKVEGIAFRFLPDP+Q++NALE
Sbjct: 121 FRHEDAEAFLAQVRSR-RELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALE 177

[Close]

BLAST of Cucsa.123730 vs. TrEMBL
Match: F6GZZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10590 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.8e-57
Identity = 123/181 (67.96%), Postives = 141/181 (77.90%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           ME PKP   SNPL+S S+FIH HC +LGAEL++RL+DT+R AG     WP  A  RS P 
Sbjct: 1   MEPPKP---SNPLLSFSTFIHQHCLRLGAELASRLDDTRRLAGN----WPPPALRRSLPL 60

Query: 61  PA--FASLARHTHA----LAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIG 120
            +  FAS+++        L   LS D VAKSL GTAVYTVSNSNNEFVLISDPNG KSIG
Sbjct: 61  SSLPFASMSQEARGAKRDLGVALSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNGIKSIG 120

Query: 121 LLCFRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNAL 176
           LLCFR+EDAE FLAQV+SR RELRS A+VVPI+LDQVY+LKVEGIAFRFLPDP+Q+KNAL
Sbjct: 121 LLCFRQEDAEAFLAQVQSRTRELRSQARVVPISLDQVYMLKVEGIAFRFLPDPVQIKNAL 174

[Close]

BLAST of Cucsa.123730 vs. TrEMBL
Match: B9GNW7_POPTR (Chloroplast inner membrane import protein Tic22 OS=Populus trichocarpa GN=POPTR_0002s12830g PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.4e-56
Identity = 119/172 (69.19%), Postives = 135/172 (78.49%), Query Frame = 1


Query: 5   KPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPAFA 64
           +P   SNPL+S+S+FIHHHC +LGAE S R+ DT RF G      P        P+P FA
Sbjct: 2   EPSGPSNPLLSLSTFIHHHCLRLGAEFSTRISDTTRFLGG---NLPPPRRLCLAPSPPFA 61

Query: 65  SLARHTH-ALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDA 124
           S+++    A  A LS D VAK+L GTAVYTVSNSNNEFVLISDPNGAKSIGLLCFR+EDA
Sbjct: 62  SVSQPKQTATTANLSSDHVAKTLAGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRQEDA 121

Query: 125 ETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           E FLAQVR R+RELRS AKVVPITLDQVY+LKVEGIAFRFLPDP+Q+KNALE
Sbjct: 122 EAFLAQVRLRRRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALE 170

[Close]

BLAST of Cucsa.123730 vs. TrEMBL
Match: V4T4B1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002150mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-55
Identity = 120/175 (68.57%), Postives = 141/175 (80.57%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           ME PK    +NPL+S+S+FIH +C +LG+ELS+RL+DTKR   TL+RR            
Sbjct: 1   MEFPKSQVLTNPLLSLSTFIHQNCLRLGSELSSRLDDTKR---TLSRRLQRPP----LSV 60

Query: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120
           P FA L++   ALAATLS D V+K+L GTAVYTVSNS+NEFVLISDPNGAKSIGLLCFR+
Sbjct: 61  PPFAFLSQPKQALAATLSSDFVSKTLAGTAVYTVSNSSNEFVLISDPNGAKSIGLLCFRQ 120

Query: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           EDAE FLAQVR R++ELRS AKVVPITLDQVY+LKVEGIAFRFLPDP Q++NALE
Sbjct: 121 EDAEAFLAQVRLRRKELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPAQIRNALE 168

[Close]

BLAST of Cucsa.123730 vs. TAIR10
Match: AT4G33350.1 (AT4G33350.1 Tic22-like family protein)

HSP 1 Score: 214.2 bits (544), Expect = 6.7e-56
Identity = 114/167 (68.26%), Postives = 132/167 (79.04%), Query Frame = 1


Query: 11  NPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPTPA-FASLARH 70
           NP +S SSFIHH CT+  ++LS R+EDTKRFA TLA R        S PTP  FAS+++ 
Sbjct: 8   NPFLSFSSFIHHQCTRFSSDLSARIEDTKRFAETLATRR------FSLPTPPPFASVSQS 67

Query: 71  THAL-AATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLA 130
                  TLSP  VAK+L GT+V+TVSN+NNEFVLISDP G KSIGLLCFR+EDAE FLA
Sbjct: 68  KSGTPTTTLSPSLVAKALAGTSVFTVSNTNNEFVLISDPTGGKSIGLLCFRQEDAEAFLA 127

Query: 131 QVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           Q R R+REL++NAKVVPITLDQVYLLKVEGI+FRFLPDPIQ+KNALE
Sbjct: 128 QARLRRRELKTNAKVVPITLDQVYLLKVEGISFRFLPDPIQIKNALE 168

[Close]

BLAST of Cucsa.123730 vs. TAIR10
Match: AT3G23710.1 (AT3G23710.1 Tic22-like family protein)

HSP 1 Score: 92.8 bits (229), Expect = 2.3e-19
Identity = 47/100 (47.00%), Postives = 68/100 (68.00%), Query Frame = 1


Query: 77  LSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRKEDAETFLAQVRSRKRE 136
           LS D + + L G  VY +SNSN EFVL+S  +  KS+GLL  ++EDAET L +++S    
Sbjct: 110 LSADAIEERLAGVPVYALSNSNEEFVLVSGTSSGKSLGLLFCKEEDAETLLKEMKSMDPR 169

Query: 137 LR-SNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           +R   +KVV + L +V+ LKV G+AFR +P+  Q+KNAL+
Sbjct: 170 MRKEGSKVVALALSKVFQLKVNGVAFRLIPESTQVKNALK 209

[Close]

BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|449446989|ref|XP_004141252.1| (PREDICTED: protein TIC 22, chloroplastic [Cucumis sativus])

HSP 1 Score: 351.3 bits (900), Expect = 1.0e-93
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT
Sbjct: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60

Query: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120
           PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK
Sbjct: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE
Sbjct: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 175

[Close]

BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|659103247|ref|XP_008452542.1| (PREDICTED: protein TIC 22, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.0e-91
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           MEIPKPY HSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPA+ANWRSFPT
Sbjct: 1   MEIPKPYTHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAEANWRSFPT 60

Query: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120
           PAFASLARHTHALAATLS DQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK
Sbjct: 61  PAFASLARHTHALAATLSSDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           EDAETFLAQVRSRKREL+SNAKVVPITLDQVYLLKVEGIAFRFLPDPIQ+KNALE
Sbjct: 121 EDAETFLAQVRSRKRELKSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQIKNALE 175

[Close]

BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|659103244|ref|XP_008452540.1| (PREDICTED: protein TIC 22, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.0e-91
Identity = 170/175 (97.14%), Postives = 173/175 (98.86%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWRSFPT 60
           MEIPKPY HSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPA+ANWRSFPT
Sbjct: 1   MEIPKPYTHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAEANWRSFPT 60

Query: 61  PAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120
           PAFASLARHTHALAATLS DQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK
Sbjct: 61  PAFASLARHTHALAATLSSDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLCFRK 120

Query: 121 EDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           EDAETFLAQVRSRKREL+SNAKVVPITLDQVYLLKVEGIAFRFLPDPIQ+KNALE
Sbjct: 121 EDAETFLAQVRSRKRELKSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQIKNALE 175

[Close]

BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|1009134167|ref|XP_015884297.1| (PREDICTED: protein TIC 22, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 264.6 bits (675), Expect = 1.2e-67
Identity = 135/178 (75.84%), Postives = 148/178 (83.15%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQANWR---S 60
           ME PKP   SNP +S+S+FIH HC ++G+E +NRLEDTKRFAG LA  WP     R    
Sbjct: 18  MESPKPCGTSNPFLSLSTFIHQHCLRIGSEFTNRLEDTKRFAGNLAGNWPPAVTRRLRLP 77

Query: 61  FPTPAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLC 120
            P PAFASL +  HALAATLS D VAK+L GTAVYTVSNSNNEFVLISDPNGAKSIGLLC
Sbjct: 78  RPPPAFASLVQPKHALAATLSSDHVAKTLAGTAVYTVSNSNNEFVLISDPNGAKSIGLLC 137

Query: 121 FRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           FR+EDAE FLAQVRSRKRELRS AKVVPITLDQVY+LKVEGIAFRFLPDP+Q+KNALE
Sbjct: 138 FRQEDAEAFLAQVRSRKRELRSQAKVVPITLDQVYMLKVEGIAFRFLPDPVQIKNALE 195

[Close]

BLAST of Cucsa.123730 vs. NCBI nr
Match: gi|694450570|ref|XP_009350661.1| (PREDICTED: protein TIC 22, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 138/178 (77.53%), Postives = 150/178 (84.27%), Query Frame = 1


Query: 1   MEIPKPYPHSNPLISVSSFIHHHCTKLGAELSNRLEDTKRFAGTLARRWPAQAN--WRSF 60
           ME PKPYP SNPL+S+SSFIH HC +LGAELS RLEDTKR AGT+A  +   A+   RS 
Sbjct: 1   MESPKPYPRSNPLLSLSSFIHQHCLRLGAELSTRLEDTKRLAGTIAGNFAPAASRRMRSA 60

Query: 61  P-TPAFASLARHTHALAATLSPDQVAKSLVGTAVYTVSNSNNEFVLISDPNGAKSIGLLC 120
           P +P FA LA+  HALAATLS D VAKSL GTAVYTVSNSNNEFVLISDPN AKSIGLLC
Sbjct: 61  PVSPPFAWLAQRNHALAATLSSDHVAKSLAGTAVYTVSNSNNEFVLISDPNEAKSIGLLC 120

Query: 121 FRKEDAETFLAQVRSRKRELRSNAKVVPITLDQVYLLKVEGIAFRFLPDPIQLKNALE 176
           FR EDAE FLAQVRSR RELRS AKVVPITLDQVY+LKVEGIAFRFLPDP+Q++NALE
Sbjct: 121 FRHEDAEAFLAQVRSR-RELRSAAKVVPITLDQVYMLKVEGIAFRFLPDPVQIRNALE 177

The following BLAST results are available for this feature:

BLAST of Cucsa.123730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIC22_ARATH	1.2e-54	68.26	Protein TIC 22, chloroplastic OS=Arabidopsis thaliana GN=TIC22 PE=1 SV=1	[more]
TIC22_PEA	2.0e-49	65.45	Protein TIC 22, chloroplastic OS=Pisum sativum GN=TIC22 PE=1 SV=1	[more]
TI22L_ARATH	4.0e-18	47.00	Protein TIC 22-like, chloroplastic OS=Arabidopsis thaliana GN=TIC22L PE=3 SV=1	[more]

BLAST of Cucsa.123730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L097_CUCSA	6.9e-94	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639760 PE=4 SV=1	[more]
M5XL62_PRUPE	2.4e-62	75.28	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009744mg PE=4 SV=1	[more]
F6GZZ6_VITVI	6.8e-57	67.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10590 PE=4 SV=...	[more]
B9GNW7_POPTR	3.4e-56	69.19	Chloroplast inner membrane import protein Tic22 OS=Populus trichocarpa GN=POPTR_...	[more]
V4T4B1_9ROSI	1.3e-55	68.57	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002150mg PE=4 SV=1	[more]

BLAST of Cucsa.123730 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G33350.1	6.7e-56	68.26	Tic22-like family protein	[more]
AT3G23710.1	2.3e-19	47.00	Tic22-like family protein	[more]

BLAST of Cucsa.123730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446989\|ref\|XP_004141252.1\|	1.0e-93	100.00	PREDICTED: protein TIC 22, chloroplastic [Cucumis sativus]	[more]
gi\|659103247\|ref\|XP_008452542.1\|	6.0e-91	97.14	PREDICTED: protein TIC 22, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659103244\|ref\|XP_008452540.1\|	6.0e-91	97.14	PREDICTED: protein TIC 22, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|1009134167\|ref\|XP_015884297.1\|	1.2e-67	75.84	PREDICTED: protein TIC 22, chloroplastic [Ziziphus jujuba]	[more]
gi\|694450570\|ref\|XP_009350661.1\|	1.5e-65	77.53	PREDICTED: protein TIC 22, chloroplastic-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007378	Tic22-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.123730.1	Cucsa.123730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007378	Tic22-like	PFAM	PF04278	Tic22	coord: 13..175 score: 7.4
None	No IPR available	PANTHER	PTHR33926	FAMILY NOT NAMED	coord: 8..176 score: 1.8
None	No IPR available	PANTHER	PTHR33926:SF2	PROTEIN TIC 22, CHLOROPLASTIC	coord: 8..176 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.123730	Cla020679	Watermelon (97103) v1	cgywmB196
Cucsa.123730	Csa4G639760	Cucumber (Chinese Long) v2	cgycuB163
Cucsa.123730	MELO3C016748	Melon (DHL92) v3.5.1	cgymeB189
Cucsa.123730	ClCG05G019830	Watermelon (Charleston Gray)	cgywcgB194
Cucsa.123730	CSPI04G24030	Wild cucumber (PI 183967)	cgycpiB164
Cucsa.123730	CmaCh09G002220	Cucurbita maxima (Rimu)	cgycmaB0320
Cucsa.123730	CmaCh01G018440	Cucurbita maxima (Rimu)	cgycmaB0323
Cucsa.123730	CmoCh09G002160	Cucurbita moschata (Rifu)	cgycmoB0317
Cucsa.123730	Lsi04G015680	Bottle gourd (USVL1VR-Ls)	cgylsiB186
Cucsa.123730	Cp4.1LG02g07090	Cucurbita pepo (Zucchini)	cgycpeB0311
Cucsa.123730	Cp4.1LG06g01460	Cucurbita pepo (Zucchini)	cgycpeB0313
Cucsa.123730	MELO3C016748.2	Melon (DHL92) v3.6.1	cgymedB187
Cucsa.123730	CsaV3_4G034280	Cucumber (Chinese Long) v3	cgycucB167
Cucsa.123730	Cla97C05G101450	Watermelon (97103) v2	cgywmbB190
Cucsa.123730	Bhi09G002736	Wax gourd	cgywgoB223

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None