Cucsa.121650 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.121650
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold00999 : 145221 .. 146347 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGGGTCTTTTTCTGAATTGATCATATCCAATTTTCCTTTTTGTTTTCATTTTTGGTCCACTTCTCTAGAAAGTGACCTTGTAGCAAGGACCATCAGCAGAAGGAGACTATGTCTTGTTCCATTTTCAGATCAAGACCCCCCATTCCTTTATTCACGTTCATAAGCCTGTACGGAAATGAAAATTTCCCGCCCTGTCCTCCTTTTCTTCACAATCCTTTTGTTTCATCTTCATCTCTGTTTCGCCGATGATGCCCTCGATGAATTCAAAGCTTGCAGTGTGAATTACAACTGCGGTGAATTGGTTAACATCTCCTATCCATTTTGGGGGAATGATCGCCAATCCTTTTGCGGTCGCCGAGAATTCGGCCTCAGTTGTAAAGACAACGAAACCACTGCGATTGAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGGGTATGTTTAATTTATTCTCAATTGCATGATACTCAAAATTAGGATTTGTGTGCAATTGTGGAAGTGATATGCATCCTTACGTTTTGCAGATTTCCATATCTTTCATCTCCTACTAG

mRNA sequence

ATGGAGCGGGCTTGCAGTGTGAATTACAACTGCGGTGAATTGGTTAACATCTCCTATCCATTTTGGGGGAATGATCGCCAATCCTTTTGCGGTCGCCGAGAATTCGGCCTCAGATTTGTGTGCAATTGTGGAAGTGATATGCATCCTTACGTTTTGCAGATTTCCATATCTTTCATCTCCTACTAG

Coding sequence (CDS)

ATGGAGCGGGCTTGCAGTGTGAATTACAACTGCGGTGAATTGGTTAACATCTCCTATCCATTTTGGGGGAATGATCGCCAATCCTTTTGCGGTCGCCGAGAATTCGGCCTCAGATTTGTGTGCAATTGTGGAAGTGATATGCATCCTTACGTTTTGCAGATTTCCATATCTTTCATCTCCTACTAG

Protein sequence

MERACSVNYNCGELVNISYPFWGNDRQSFCGRREFGLRFVCNCGSDMHPYVLQISISFISY*

Homology

[Close]

BLAST of Cucsa.121650 vs. TrEMBL
Match: A0A0A0LTP4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042490 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-12
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 3   RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGLRFVCNCGSDMH----PYVL 53
           +AC VNYNCG+LVNISYPFWGNDRQSFCGRREFGL    N  + +H    PY++
Sbjct: 141 KACGVNYNCGQLVNISYPFWGNDRQSFCGRREFGLSCKNNETTTIHINSWPYIV 194

[Close]

BLAST of Cucsa.121650 vs. TrEMBL
Match: A0A0A0LQT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042500 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +AC VNYNCGELVNISYPFWGNDRQSFCGRREFGL
Sbjct: 31 KACGVNYNCGELVNISYPFWGNDRQSFCGRREFGL 65

[Close]

BLAST of Cucsa.121650 vs. TrEMBL
Match: A0A0A0LT12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042540 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.5e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +AC VNYNCGELVNISYPFWGN+RQSFCGRR+F L
Sbjct: 30 KACGVNYNCGELVNISYPFWGNERQSFCGRRQFRL 64

[Close]

BLAST of Cucsa.121650 vs. TrEMBL
Match: A0A0A0LQF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042510 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-09
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +ACSV Y+CG LVNISYPFWGN+RQ FCGRREF L
Sbjct: 31 KACSVYYSCGVLVNISYPFWGNERQQFCGRREFEL 65

[Close]

BLAST of Cucsa.121650 vs. TrEMBL
Match: A0A0A0LVS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042480 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.5e-06
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 5  CSVNYNCGELVNISYPFWGNDRQSFCGRREFGLR 39
          C  +YNCGELVNI YPFWGN +++ CG++EF L+
Sbjct: 29 CGESYNCGELVNIRYPFWGNKKETVCGQQEFKLK 62

[Close]

BLAST of Cucsa.121650 vs. NCBI nr
Match: gi|778657273|ref|XP_011650581.1| (PREDICTED: probable receptor-like protein kinase At1g67000 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGLRFVCNCGSDMH----PYVL 53
          +AC VNYNCG+LVNISYPFWGNDRQSFCGRREFGL    N  + +H    PY++
Sbjct: 31 KACGVNYNCGQLVNISYPFWGNDRQSFCGRREFGLSCKNNETTTIHINSWPYIV 84

[Close]

BLAST of Cucsa.121650 vs. NCBI nr
Match: gi|700209041|gb|KGN64137.1| (hypothetical protein Csa_1G042490 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-12
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 3   RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGLRFVCNCGSDMH----PYVL 53
           +AC VNYNCG+LVNISYPFWGNDRQSFCGRREFGL    N  + +H    PY++
Sbjct: 141 KACGVNYNCGQLVNISYPFWGNDRQSFCGRREFGLSCKNNETTTIHINSWPYIV 194

[Close]

BLAST of Cucsa.121650 vs. NCBI nr
Match: gi|778657279|ref|XP_011650595.1| (PREDICTED: probable receptor-like protein kinase At1g67000 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +AC VNYNCGELVNISYPFWGNDRQSFCGRREFGL
Sbjct: 31 KACGVNYNCGELVNISYPFWGNDRQSFCGRREFGL 65

[Close]

BLAST of Cucsa.121650 vs. NCBI nr
Match: gi|778664770|ref|XP_011660350.1| (PREDICTED: uncharacterized protein At1g18380-like [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +AC VNYNCGELVNISYPFWGN+RQSFCGRR+F L
Sbjct: 30 KACGVNYNCGELVNISYPFWGNERQSFCGRRQFRL 64

[Close]

BLAST of Cucsa.121650 vs. NCBI nr
Match: gi|659068749|ref|XP_008445996.1| (PREDICTED: uncharacterized protein LOC103488855 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1


Query: 3  RACSVNYNCGELVNISYPFWGNDRQSFCGRREFGL 38
          +AC V YNCG+LVNISYPFWGN+RQSFCGRREFGL
Sbjct: 31 KACGVYYNCGDLVNISYPFWGNERQSFCGRREFGL 65

The following BLAST results are available for this feature:

BLAST of Cucsa.121650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTP4_CUCSA	1.0e-12	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042490 PE=4 SV=1	[more]
A0A0A0LQT9_CUCSA	1.4e-12	94.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042500 PE=3 SV=1	[more]
A0A0A0LT12_CUCSA	7.5e-11	85.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042540 PE=4 SV=1	[more]
A0A0A0LQF0_CUCSA	7.0e-09	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042510 PE=3 SV=1	[more]
A0A0A0LVS6_CUCSA	9.5e-06	61.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042480 PE=4 SV=1	[more]

BLAST of Cucsa.121650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657273\|ref\|XP_011650581.1\|	1.5e-12	66.67	PREDICTED: probable receptor-like protein kinase At1g67000 [Cucumis sativus]	[more]
gi\|700209041\|gb\|KGN64137.1\|	1.5e-12	66.67	hypothetical protein Csa_1G042490 [Cucumis sativus]	[more]
gi\|778657279\|ref\|XP_011650595.1\|	2.0e-12	94.29	PREDICTED: probable receptor-like protein kinase At1g67000 [Cucumis sativus]	[more]
gi\|778664770\|ref\|XP_011660350.1\|	1.1e-10	85.71	PREDICTED: uncharacterized protein At1g18380-like [Cucumis sativus]	[more]
gi\|659068749\|ref\|XP_008445996.1\|	1.1e-10	85.71	PREDICTED: uncharacterized protein LOC103488855 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.121650.1	Cucsa.121650.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.121650	Lsi02G001950	Bottle gourd (USVL1VR-Ls)	cgylsiB181
Cucsa.121650	CsaV3_1G006820	Cucumber (Chinese Long) v3	cgycucB163

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.121650	Cucumber (Gy14) v1	cgycgyB059
Cucsa.121650	Cucurbita maxima (Rimu)	cgycmaB0318
Cucsa.121650	Cucurbita maxima (Rimu)	cgycmaB0315
Cucsa.121650	Cucurbita maxima (Rimu)	cgycmaB0316
Cucsa.121650	Cucurbita maxima (Rimu)	cgycmaB0317
Cucsa.121650	Cucurbita moschata (Rifu)	cgycmoB0312
Cucsa.121650	Cucurbita moschata (Rifu)	cgycmoB0313
Cucsa.121650	Cucurbita moschata (Rifu)	cgycmoB0314
Cucsa.121650	Cucurbita moschata (Rifu)	cgycmoB0315
Cucsa.121650	Wild cucumber (PI 183967)	cgycpiB160
Cucsa.121650	Wild cucumber (PI 183967)	cgycpiB161
Cucsa.121650	Cucumber (Chinese Long) v2	cgycuB159
Cucsa.121650	Cucumber (Chinese Long) v2	cgycuB160
Cucsa.121650	Melon (DHL92) v3.5.1	cgymeB185
Cucsa.121650	Melon (DHL92) v3.5.1	cgymeB186
Cucsa.121650	Watermelon (Charleston Gray)	cgywcgB191
Cucsa.121650	Watermelon (Charleston Gray)	cgywcgB190
Cucsa.121650	Watermelon (97103) v1	cgywmB193
Cucsa.121650	Watermelon (97103) v1	cgywmB194
Cucsa.121650	Cucurbita pepo (Zucchini)	cgycpeB0306
Cucsa.121650	Cucurbita pepo (Zucchini)	cgycpeB0307
Cucsa.121650	Cucurbita pepo (Zucchini)	cgycpeB0308
Cucsa.121650	Cucurbita pepo (Zucchini)	cgycpeB0309
Cucsa.121650	Bottle gourd (USVL1VR-Ls)	cgylsiB182
Cucsa.121650	Melon (DHL92) v3.6.1	cgymedB182
Cucsa.121650	Melon (DHL92) v3.6.1	cgymedB183
Cucsa.121650	Silver-seed gourd	carcgyB0452
Cucsa.121650	Silver-seed gourd	carcgyB0589
Cucsa.121650	Silver-seed gourd	carcgyB0670
Cucsa.121650	Silver-seed gourd	carcgyB0898
Cucsa.121650	Cucumber (Chinese Long) v3	cgycucB164
Cucsa.121650	Watermelon (97103) v2	cgywmbB186
Cucsa.121650	Watermelon (97103) v2	cgywmbB187
Cucsa.121650	Wax gourd	cgywgoB217
Cucsa.121650	Wax gourd	cgywgoB218