Cucsa.120590 (gene) Cucumber (Gy14) v1

NameCucsa.120590
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00998 : 2654145 .. 2654505 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCAATAGGCACATCGAGGCTAACAACACCCAGCACATTCGCTTTCAACGCAGTGCACAAGCACAATGCAGCTTCGAGATCGGCCAATCCCGTCAACAAACTACAACATTTCTTGCTTGGTTTTGCTCCAATCTGCTCGGATATCAGCCCAAGCCAGCTCCCACAAACCCCAAACTTTAGTGTATCTTTCGGGCACTTCGCCTGCGTTGCCGGAGTGGTAGCAGGTGATGGTCGAACCTTCGGAGGGCAACTCGGTTTGACAGATGAAACACAAGCCAAAGCTATGATATTCAACAAGACTACAAGAGCCAATACCTTCACAAATTTGAGCTCCATAACTCTTTTCCTAAGAGCCAATGTG

mRNA sequence

AGCAATAGGCACATCGAGGCTAACAACACCCAGCACATTCGCTTTCAACGCAGTGCACAAGCACAATGCAGCTTCGAGATCGGCCAATCCCGTCAACAAACTACAACATTTCTTGCTTGGTTTTGCTCCAATCTGCTCGGATATCAGCCCAAGCCAGCTCCCACAAACCCCAAACTTTAGTGTATCTTTCGGGCACTTCGCCTGCGTTGCCGGAGTGGTAGCAGGTGATGGTCGAACCTTCGGAGGGCAACTCGGTTTGACAGATGAAACACAAGCCAAAGCTATGATATTCAACAAGACTACAAGAGCCAATACCTTCACAAATTTGAGCTCCATAACTCTTTTCCTAAGAGCCAATGTG

Coding sequence (CDS)

AGCAATAGGCACATCGAGGCTAACAACACCCAGCACATTCGCTTTCAACGCAGTGCACAAGCACAATGCAGCTTCGAGATCGGCCAATCCCGTCAACAAACTACAACATTTCTTGCTTGGTTTTGCTCCAATCTGCTCGGATATCAGCCCAAGCCAGCTCCCACAAACCCCAAACTTTAGTGTATCTTTCGGGCACTTCGCCTGCGTTGCCGGAGTGGTAGCAGGTGATGGTCGAACCTTCGGAGGGCAACTCGGTTTGACAGATGAAACACAAGCCAAAGCTATGATATTCAACAAGACTACAAGAGCCAATACCTTCACAAATTTGAGCTCCATAACTCTTTTCCTAAGAGCCAATGTG

Protein sequence

AIGTSRLTTPSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDISPSQLPQTPNFSVSFGHFACVAGVVAGDGRTFGGQLGLTDETQAKAMIFNKTTRANTFTNLSSITLFLRANV
BLAST of Cucsa.120590 vs. TrEMBL
Match: A0A0B2PH82_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_023247 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-07
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1

Query: 10 PSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDISPSQLPQTPNFSVSFGHFACV 69
          PST A  AVH+ +AAS+SA P+   QH L G  P  +  SP    QTP+F+VS GH A  
Sbjct: 9  PSTLALIAVHRQSAASKSAKPLTNAQHSLEGGVPTVTLTSPKMSAQTPSFNVSLGHEA-- 68

Query: 70 AGVVAGDGRTFGGQLGL 87
             + G+G   GGQ  L
Sbjct: 69 ---LGGEGGEGGGQPAL 80

BLAST of Cucsa.120590 vs. TrEMBL
Match: K3YAV2_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_011344mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 44/113 (38.94%), Postives = 54/113 (47.79%), Query Frame = 1

Query: 2   IGTSRLTTPSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDISPSQLPQTPNFSV 61
           IG S +T PST A  AV +  AAS+SA P  +LQH   G  P      PS L  TPN S 
Sbjct: 7   IGMS-MTAPSTLALMAVQRQTAASKSARPPMRLQHGSAGTLPTSPLTRPSTLAHTPNLSA 66

Query: 62  SFGHFACVAG--VVAGDGRTFGGQLGLTDETQAKAMIFNKTTRANTFTNLSSI 113
             GH     G     G G T GG +G+    QA A +  +  RA   T L ++
Sbjct: 67  FTGHLPLDGGGEEGGGGGGTTGG-VGVGQLPQALATVNRRRLRAKKRTALDAM 117

BLAST of Cucsa.120590 vs. TrEMBL
Match: A0A022QSM1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017316mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 1

Query: 3  GTSRLTTPSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDIS-PSQLPQTPNFSV 62
          GT R   P TFA  AV +  AASRSANP  +LQH + G  PI   I+ PS+L  TP+F V
Sbjct: 20 GTFRFI-PRTFALMAVQRQTAASRSANPAMRLQHGVFGGVPIVRPINPPSKLVHTPSFRV 79

Query: 63 SFG 65
          SFG
Sbjct: 80 SFG 81

BLAST of Cucsa.120590 vs. NCBI nr
Match: gi|734331465|gb|KHN07064.1| (hypothetical protein glysoja_023247 [Glycine soja])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1

Query: 10 PSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDISPSQLPQTPNFSVSFGHFACV 69
          PST A  AVH+ +AAS+SA P+   QH L G  P  +  SP    QTP+F+VS GH A  
Sbjct: 9  PSTLALIAVHRQSAASKSAKPLTNAQHSLEGGVPTVTLTSPKMSAQTPSFNVSLGHEA-- 68

Query: 70 AGVVAGDGRTFGGQLGL 87
             + G+G   GGQ  L
Sbjct: 69 ---LGGEGGEGGGQPAL 80

BLAST of Cucsa.120590 vs. NCBI nr
Match: gi|944234035|gb|KQK98397.1| (hypothetical protein SETIT_011344mg [Setaria italica])

HSP 1 Score: 58.9 bits (141), Expect = 6.9e-06
Identity = 44/113 (38.94%), Postives = 54/113 (47.79%), Query Frame = 1

Query: 2   IGTSRLTTPSTFAFNAVHKHNAASRSANPVNKLQHFLLGFAPICSDISPSQLPQTPNFSV 61
           IG S +T PST A  AV +  AAS+SA P  +LQH   G  P      PS L  TPN S 
Sbjct: 7   IGMS-MTAPSTLALMAVQRQTAASKSARPPMRLQHGSAGTLPTSPLTRPSTLAHTPNLSA 66

Query: 62  SFGHFACVAG--VVAGDGRTFGGQLGLTDETQAKAMIFNKTTRANTFTNLSSI 113
             GH     G     G G T GG +G+    QA A +  +  RA   T L ++
Sbjct: 67  FTGHLPLDGGGEEGGGGGGTTGG-VGVGQLPQALATVNRRRLRAKKRTALDAM 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0B2PH82_GLYSO7.4e-0745.45Uncharacterized protein OS=Glycine soja GN=glysoja_023247 PE=4 SV=1[more]
K3YAV2_SETIT4.8e-0638.94Uncharacterized protein OS=Setaria italica GN=SETIT_011344mg PE=4 SV=1[more]
A0A022QSM1_ERYGU8.2e-0653.97Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017316mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|734331465|gb|KHN07064.1|1.1e-0645.45hypothetical protein glysoja_023247 [Glycine soja][more]
gi|944234035|gb|KQK98397.1|6.9e-0638.94hypothetical protein SETIT_011344mg [Setaria italica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.120590.1Cucsa.120590.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None