Cucsa.118310 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.118310
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionRetrotransposon protein
Locationscaffold00998 : 108483 .. 108946 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTACTACCTATGTGATGTTGGGTATCCAAACGTTGAGGGTTTATTGGCTCCATACAGAGGAGAAAGATATCATCTTTTAGAGTGGCATGGTGGAGGTAATGTACCAACAACAGCAAGGGAGTTCTTCAATATGAAACATTCTTCTACTCGAAATGTCATCGAAAGAGCGCTCAGGTTGTTGAACGACCGTTGGGTAATCCTTAGAGAGTCATACTACCCAGTCCAAATCCAATGTCGCAATAATGGCTTTGTTGTCTCCTACACAATCTTATAAACAGGGAGATGACTAAAACAATGAAGTCCCCAACGATTTGGATGAAGGTGATTCCACCTGCGCTACAACTGGGGGTGACAAGATTAATTATATCGAGACCTCAAACGAATGGAGTCAATGGAGGGATGAATTGGCTCATTAGATGTTCAATGATTGAGAGTTACATAATCAGTAGAACTCTTATG

mRNA sequence

atgtattactacctatgtgatgttgggtatccaaacgttgagggtttattggctccatacagaggagaaagatatcatcttttagagtggcatggtggaggtaatgtaccaacaacagcaagggagttcttcaatatgaaacattcttctactcgaaatgtcatcgaaagagcgctcaggttgttgaacgaccgttgggtaatccttagagagtcatactacccagtccaaatccaatggatgaattggctcattagatgttcaatgattgagagttacataatcagtagaACTCTTATG

Coding sequence (CDS)

ATGTATTACTACCTATGTGATGTTGGGTATCCAAACGTTGAGGGTTTATTGGCTCCATACAGAGGAGAAAGATATCATCTTTTAGAGTGGCATGGTGGAGGTAATGTACCAACAACAGCAAGGGAGTTCTTCAATATGAAACATTCTTCTACTCGAAATGTCATCGAAAGAGCGCTCAGGTTGTTGAACGACCGTTGGGTAATCCTTAGAGAGTCATACTACCCAGTCCAAATCCAATGGATGAATTGGCTCATTAGATGTTCAATGATTGAGAGTTACATAATCAGTAGAACTCTTATG

Protein sequence

MYYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRLLNDRWVILRESYYPVQIQWMNWLIRCSMIESYIISRTLM
Homology
[Close]
BLAST of Cucsa.118310 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYLCD GYPN EG LAPY+G+RYHL EW G  N PT A+E+FNMKHSS RNVIERA  +
Sbjct: 187 YYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGV 246

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR +SYYP+Q+Q    ++ C+++ + I
Sbjct: 247 LKGRWTILRGKSYYPLQVQ-CRTILACTLLHNLI 279

[Close]
BLAST of Cucsa.118310 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-25
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYL DVGYPN EG LAPYRG+RYHL EW G  N P+T++EFFNMKH S RNVIERA  +
Sbjct: 215 YYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGV 274

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR +SYYPV++Q    ++ C ++ + I
Sbjct: 275 LKGRWAILRGKSYYPVEVQ-CRTILACCLLHNLI 307

[Close]
BLAST of Cucsa.118310 vs. TrEMBL
Match: A5BND9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYL DVGY N +G LAPYRG+RYHL +W  G ++PTT  EFFNMKHS+ RNVIER   L
Sbjct: 246 YYYLVDVGYTNGKGFLAPYRGQRYHLNDWREG-HMPTTHEEFFNMKHSAARNVIERCFGL 305

Query: 62  LNDRWVILRE-SYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR   +YP++ Q    ++ C +I + I
Sbjct: 306 LKLRWAILRSPCFYPIKTQ-CKIILACCLIHNLI 337

[Close]
BLAST of Cucsa.118310 vs. TrEMBL
Match: S8CZP1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02213 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-19
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           +YYLCD GY + +G L PYRG RYHL EW  G   P  A+E+FNMKH+S RNVIERA  +
Sbjct: 231 HYYLCDSGYMDCDGFLTPYRGVRYHLREWGPGMQGPQNAKEYFNMKHASARNVIERAWGI 290

Query: 62  LNDRWVILRESY-YPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR  Y YP++ Q    ++ C+++ ++I
Sbjct: 291 LKSRWAILRSPYFYPIRTQ-TAIILACTLLHNFI 323

[Close]
BLAST of Cucsa.118310 vs. TrEMBL
Match: S8DIU0_9LAMI (Retrotransposon protein (Fragment) OS=Genlisea aurea GN=M569_12006 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.2e-19
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 3   YYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRLL 62
           YYLCD GY N +G LAPYRG RYHL EW  G   P  A+E+FNMKH+S RNVIERA  ++
Sbjct: 144 YYLCDGGYMNCDGFLAPYRGVRYHLKEWGPGMQAPQNAKEYFNMKHASARNVIERAWGVI 203

Query: 63  NDRWVILRESYYPVQIQWMNWLIRCSMIESYI 95
             R  ILR  +YP++ Q    ++ C ++ +++
Sbjct: 204 KSRRAILRIPFYPIRTQ-TAIMLTCELLHNFV 234

[Close]
BLAST of Cucsa.118310 vs. TAIR10
Match: AT5G35695.1 (AT5G35695.1 Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 1 

Query: 3   YYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRLL 62
           +YL D G+ N    LAP+RG RYHL E+ G    P T  E FN++H S RNVIER   + 
Sbjct: 49  FYLVDCGFANRLNFLAPFRGVRYHLQEFAGQRRDPETPHELFNLRHVSLRNVIERIFGIF 108

Query: 63  NDRWVILRES 73
             R+ I + +
Sbjct: 109 KSRFAIFKSA 118

[Close]
BLAST of Cucsa.118310 vs. TAIR10
Match: AT1G43722.1 (AT1G43722.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 7.0e-10
Identity = 30/67 (44.78%), Postives = 39/67 (58.21%), Query Frame = 1 

Query: 3   YYLCDVGYPNVEGLLAPYRGERYHLLEWHGG----GNVPTTAREFFNMKHSSTRNVIERA 62
           YYL D GYPN +GLLAPYR  R  ++ +H      G  P    E FN  H+S R+VIER 
Sbjct: 253 YYLVDSGYPNKQGLLAPYRSSRNRVVRYHMSQFYYGPRPRNKHELFNQCHTSLRSVIERT 312

Query: 63  LRLLNDR 66
            R+  ++
Sbjct: 313 FRIWKNK 319

[Close]
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659111563|ref|XP_008455792.1| (PREDICTED: putative nuclease HARBI1 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28
Identity = 63/94 (67.02%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYLCD GYPN EG LAPYRGERYHL EW G  N PTTAREFFNMKHSS RNVIERA  L
Sbjct: 173 YYYLCDAGYPNAEGFLAPYRGERYHLSEWRGESNAPTTAREFFNMKHSSARNVIERAFGL 232

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR +SYYPV +Q    ++ C ++ + I
Sbjct: 233 LKGRWAILRGKSYYPVDVQ-CRTIMACCLLHNLI 265

[Close]
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-27
Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYLCD GYPN EG LAPY+G+RYHL EW G  N PT A+E+FNMKHSS RNVIERA  +
Sbjct: 187 YYYLCDAGYPNAEGFLAPYKGQRYHLQEWRGAANAPTNAKEYFNMKHSSARNVIERAFGV 246

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR +SYYP+Q+Q    ++ C+++ + I
Sbjct: 247 LKGRWTILRGKSYYPLQVQ-CRTILACTLLHNLI 279

[Close]
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659123898|ref|XP_008461892.1| (PREDICTED: uncharacterized protein LOC103500386 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYL DVGYPN EG LAPYRG+RYHL EWHG  N P T++EFFNMKHSS RNVIERA  +
Sbjct: 56  YYYLVDVGYPNAEGFLAPYRGQRYHLQEWHGAENAPATSKEFFNMKHSSARNVIERAFGV 115

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RWVILR +SYY V++Q    ++ C +I + I
Sbjct: 116 LKGRWVILRGKSYYSVEVQ-CRTILACCLIHNLI 148

[Close]
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-25
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYL DVGYPN EG LAPYRG+RYHL EW G  N P+T++EFFNMKH S RNVIERA  +
Sbjct: 215 YYYLVDVGYPNAEGFLAPYRGQRYHLQEWRGPENAPSTSKEFFNMKHYSARNVIERAFGV 274

Query: 62  LNDRWVILR-ESYYPVQIQWMNWLIRCSMIESYI 95
           L  RW ILR +SYYPV++Q    ++ C ++ + I
Sbjct: 275 LKGRWAILRGKSYYPVEVQ-CRTILACCLLHNLI 307

[Close]
BLAST of Cucsa.118310 vs. NCBI nr
Match: gi|659131061|ref|XP_008465488.1| (PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 2   YYYLCDVGYPNVEGLLAPYRGERYHLLEWHGGGNVPTTAREFFNMKHSSTRNVIERALRL 61
           YYYL DVGYPN EG LAPYR +RYHL EW G  N P+T++EFFNMKHSS RNVIERA  +
Sbjct: 185 YYYLVDVGYPNTEGFLAPYRSQRYHLQEWRGPENAPSTSKEFFNMKHSSARNVIERAFGV 244

Query: 62  LNDRWVIL-RESYYPVQI 79
           L  RW IL R+SYYPV++
Sbjct: 245 LKGRWAILRRKSYYPVEV 262

The following BLAST results are available for this feature:
BLAST of Cucsa.118310 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME5.4e-2760.64Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.3e-2560.64Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BND9_VITVI1.4e-1955.32Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027369 PE=4 SV=1[more]
S8CZP1_9LAMI2.4e-1951.06Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02213 PE=4 SV=1[more]
S8DIU0_9LAMI9.2e-1950.00Retrotransposon protein (Fragment) OS=Genlisea aurea GN=M569_12006 PE=4 SV=1[more]
BLAST of Cucsa.118310 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35695.11.7e-1144.29 Putative harbinger transposase-derived nuclease (InterPro:IPR006912)[more]
AT1G43722.17.0e-1044.78 unknown protein[more]
BLAST of Cucsa.118310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111563|ref|XP_008455792.1|2.4e-2867.02PREDICTED: putative nuclease HARBI1 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|7.7e-2760.64retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659123898|ref|XP_008461892.1|1.0e-2663.83PREDICTED: uncharacterized protein LOC103500386 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|3.3e-2560.64retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659131061|ref|XP_008465488.1|3.6e-2469.23PREDICTED: uncharacterized protein LOC103503107 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.118310.1Cucsa.118310.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027806Harbinger transposase-derived nuclease domainPFAMPF13359DDE_Tnp_4coord: 2..74
score: 1.
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 3..94
score: 2.7
NoneNo IPR availablePANTHERPTHR22930:SF27SUBFAMILY NOT NAMEDcoord: 3..94
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.118310Melon (DHL92) v3.6.1cgymedB173
Cucsa.118310Melon (DHL92) v3.6.1cgymedB179
Cucsa.118310Silver-seed gourdcarcgyB0031
Cucsa.118310Silver-seed gourdcarcgyB0391
Cucsa.118310Silver-seed gourdcarcgyB0451
Cucsa.118310Silver-seed gourdcarcgyB0610
Cucsa.118310Cucumber (Chinese Long) v3cgycucB159
Cucsa.118310Cucumber (Chinese Long) v3cgycucB161
Cucsa.118310Watermelon (97103) v2cgywmbB174
Cucsa.118310Watermelon (97103) v2cgywmbB184
Cucsa.118310Wax gourdcgywgoB209
Cucsa.118310Wax gourdcgywgoB213
Cucsa.118310Cucumber (Gy14) v1cgycgyB071
Cucsa.118310Cucurbita maxima (Rimu)cgycmaB0292
Cucsa.118310Cucurbita maxima (Rimu)cgycmaB0298
Cucsa.118310Cucurbita maxima (Rimu)cgycmaB0299
Cucsa.118310Cucurbita maxima (Rimu)cgycmaB0312
Cucsa.118310Cucurbita moschata (Rifu)cgycmoB0289
Cucsa.118310Cucurbita moschata (Rifu)cgycmoB0295
Cucsa.118310Cucurbita moschata (Rifu)cgycmoB0296
Cucsa.118310Cucurbita moschata (Rifu)cgycmoB0309
Cucsa.118310Wild cucumber (PI 183967)cgycpiB156
Cucsa.118310Wild cucumber (PI 183967)cgycpiB158
Cucsa.118310Cucumber (Chinese Long) v2cgycuB155
Cucsa.118310Cucumber (Chinese Long) v2cgycuB157
Cucsa.118310Melon (DHL92) v3.5.1cgymeB180
Cucsa.118310Melon (DHL92) v3.5.1cgymeB182
Cucsa.118310Watermelon (Charleston Gray)cgywcgB178
Cucsa.118310Watermelon (Charleston Gray)cgywcgB179
Cucsa.118310Watermelon (97103) v1cgywmB181
Cucsa.118310Watermelon (97103) v1cgywmB182
Cucsa.118310Cucurbita pepo (Zucchini)cgycpeB0288
Cucsa.118310Cucurbita pepo (Zucchini)cgycpeB0290
Cucsa.118310Cucurbita pepo (Zucchini)cgycpeB0297
Cucsa.118310Cucurbita pepo (Zucchini)cgycpeB0302
Cucsa.118310Bottle gourd (USVL1VR-Ls)cgylsiB176
Cucsa.118310Bottle gourd (USVL1VR-Ls)cgylsiB180