Cucsa.117970 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.117970
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Unknown protein
Location	scaffold00997 : 268269 .. 268648 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAATTACACTCCAAATCAAAACACAGCAAAAGTTTAAGCTTTGAGAAAATTAAAATTAATTTTAAGTTTGTGAAAGAGAGAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGTCCGTCATCCTCAAGCAGTAAGTAATAAGTTTTTCTAGTGTTGTTTTAGAATTAAGTATATGGTTAAATATGAATAAAAAACTCAAAACTAAGTATTATATATGAGTATATATCAAAGTTATATTGAATGAAATAATAATTTAGAAAATGGTTTGATTGAGAATGCAGAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAATGA

mRNA sequence

AGAAGAAGAATTACACTCCAAATCAAAACACAGCAAAAGTTTAAGCTTTGAGAAAATTAAAATTAATTTTAAGTTTGTGAAAGAGAGAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGTCCGTCATCCTCAAGCAAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAATGA

Coding sequence (CDS)

AGAAGAAGAATTACACTCCAAATCAAAACACAGCAAAAGTTTAAGCTTTGAGAAAATTAAAATTAATTTTAAGTTTGTGAAAGAGAGAAAAATGGCTTCTGGATGCAAATGTGGTGACAATTGCTCATGTGGAGATAGCTGCAACTGCCAATCAGGGTCCGTCATCCTCAAGCAAAGTGGATGCAGCTGTGGGGATAGCTGCTCATGTGACCCATGCAGCTGCAAATGA

Protein sequence

EEELHSKSKHSKSLSFEKIKINFKFVKERKMASGCKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSCK*

Homology

[Close]

BLAST of Cucsa.117970 vs. Swiss-Prot
Match: MT1B_VICFA (Metallothionein-like protein 1B OS=Vicia faba GN=MT1B PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 29/74 (39.19%), Postives = 35/74 (47.30%), Query Frame = 1


Query: 33 SGCKCGDNCSCGDSCNCQSGS-------------VIL------------------KQSGC 76
          SGC CG +C+CGDSC C   S             VIL                  K+ GC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLSYSEVETKETVILGVGPAKIQFEGAEMSFASKEGGC 61

HSP 2 Score: 37.7 bits (86), Expect = 6.5e-02
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 1


Query: 7  KSKHSKSLSFEKIKINFKFVKERKMAS---GCKCGDNCSCGDSCNCQ 51
          ++K +  L     KI F+   E   AS   GCKCGDNC+C D CNC+
Sbjct: 31 ETKETVILGVGPAKIQFEGA-EMSFASKEGGCKCGDNCTC-DPCNCK 75

[Close]

BLAST of Cucsa.117970 vs. Swiss-Prot
Match: MT1_TRIRP (Metallothionein-like protein 1 OS=Trifolium repens GN=MT1B PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.4e-09
Identity = 27/74 (36.49%), Postives = 32/74 (43.24%), Query Frame = 1


Query: 33 SGCKCGDNCSCGDSCNCQSGS-------------------------------VILKQSGC 76
          SGC CG +C+CGDSC C   S                               V  + SGC
Sbjct: 2  SGCNCGSSCNCGDSCKCNKRSSGLNYVEAETTETVILGVGPAKIQFEDAEMGVAAEDSGC 61

[Close]

BLAST of Cucsa.117970 vs. Swiss-Prot
Match: MT1_PEA (Metallothionein-like protein 1 OS=Pisum sativum GN=MTA PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 28/74 (37.84%), Postives = 34/74 (45.95%), Query Frame = 1


Query: 33 SGCKCGDNCSCGDSCNCQSGS-------------VIL------------------KQSGC 76
          SGC CG +C+CGDSC C   S             VIL                  +  GC
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETTETVILGVGPAKIQFEGAEMSAASEDGGC 61

[Close]

BLAST of Cucsa.117970 vs. Swiss-Prot
Match: MT1A_VICFA (Metallothionein-like protein 1A OS=Vicia faba GN=MT1A PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 28/76 (36.84%), Postives = 33/76 (43.42%), Query Frame = 1


Query: 33 SGCKCGDNCSCGDSCNC---QSG-------------------------------SVILKQ 75
          SGC CG +C+CGDSC C    SG                               SV  K+
Sbjct: 2  SGCGCGSSCNCGDSCKCNKRSSGLSYSEMETKETKETVVLGFGPAKIHFDGAEMSVASKE 61

[Close]

BLAST of Cucsa.117970 vs. Swiss-Prot
Match: MT1_CICAR (Metallothionein-like protein 1 OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 27/74 (36.49%), Postives = 33/74 (44.59%), Query Frame = 1


Query: 33 SGCKCGDNCSCGDSCNC--QSG-----------------------------SVILKQSGC 76
          SGC CG +C+CGD C C  +SG                             SV  +  GC
Sbjct: 2  SGCNCGSSCNCGDQCKCNKRSGLSYVEAGETTETVVLGVGPTKIHFEGAEMSVAAEDGGC 61

[Close]

BLAST of Cucsa.117970 vs. TrEMBL
Match: O81529_MESCR (Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-09
Identity = 26/40 (65.00%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCG  CNC   S   K  GC CGD CSCDPC+C
Sbjct: 7  CNCGDNCSCGSGCNCNR-SYAKKDDGCKCGDDCSCDPCTC 45

[Close]

BLAST of Cucsa.117970 vs. TrEMBL
Match: O81529_MESCR (Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 8.1e+01
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1


Query: 30 KMASGCKCGDNCSCGDSCNC 50
          K   GCKCGD+CSC D C C
Sbjct: 27 KKDDGCKCGDDCSC-DPCTC 45

HSP 2 Score: 67.8 bits (164), Expect = 6.6e-09
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCGD CNC   +++  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCSCGDDCNC---NMMTSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of Cucsa.117970 vs. TrEMBL
Match: A0A0J8BVT6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173880 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-09
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCGD CNC     +  ++ C CGD CSCDPC+C
Sbjct: 6  CSCGDNCSCGDDCNCNR---MYSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of Cucsa.117970 vs. TrEMBL
Match: O81528_MESCR (Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-08
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 37 CGDNCSCGDSCNCQSGS-----VILKQSGCSCGDSCSCDPCSC 75
          CGDNCSCGD+C+C SG         K  GC+CGD C+CDPC+C
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

[Close]

BLAST of Cucsa.117970 vs. TrEMBL
Match: A0A0J8C7E6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g129570 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-08
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNC+CGD CNC     +  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCNCGDDCNCNR---MYAKAECGCGDDCSCDPCTC 42

[Close]

BLAST of Cucsa.117970 vs. NCBI nr
Match: gi|3342196|gb|AAC27530.1| (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-09
Identity = 26/40 (65.00%), Postives = 27/40 (67.50%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCG  CNC   S   K  GC CGD CSCDPC+C
Sbjct: 7  CNCGDNCSCGSGCNCNR-SYAKKDDGCKCGDDCSCDPCTC 45

[Close]

BLAST of Cucsa.117970 vs. NCBI nr
Match: gi|3342196|gb|AAC27530.1| (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 34.3 bits (77), Expect = 1.2e+02
Identity = 13/20 (65.00%), Postives = 14/20 (70.00%), Query Frame = 1


Query: 30 KMASGCKCGDNCSCGDSCNC 50
          K   GCKCGD+CSC D C C
Sbjct: 27 KKDDGCKCGDDCSC-DPCTC 45

HSP 2 Score: 67.8 bits (164), Expect = 9.4e-09
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCGD CNC   +++  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCSCGDDCNC---NMMTSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of Cucsa.117970 vs. NCBI nr
Match: gi|870853366|gb|KMT05247.1| (hypothetical protein BVRB_7g173880 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNCSCGD CNC     +  ++ C CGD CSCDPC+C
Sbjct: 6  CSCGDNCSCGDDCNCNR---MYSRTECGCGDDCSCDPCTC 42

[Close]

BLAST of Cucsa.117970 vs. NCBI nr
Match: gi|3342194|gb|AAC27529.1| (metallothionein [Mesembryanthemum crystallinum])

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-08
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 37 CGDNCSCGDSCNCQSGS-----VILKQSGCSCGDSCSCDPCSC 75
          CGDNCSCGD+C+C SG         K  GC+CGD C+CDPC+C
Sbjct: 3  CGDNCSCGDNCSCGSGCNCNRLYAKKGDGCNCGDDCNCDPCTC 45

[Close]

BLAST of Cucsa.117970 vs. NCBI nr
Match: gi|870857961|gb|KMT09487.1| (hypothetical protein BVRB_6g129570 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.1 bits (157), Expect = 6.1e-08
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1


Query: 35 CKCGDNCSCGDSCNCQSGSVILKQSGCSCGDSCSCDPCSC 75
          C CGDNC+CGD CNC     +  ++ C CGD CSCDPC+C
Sbjct: 6  CGCGDNCNCGDDCNCNR---MYAKAECGCGDDCSCDPCTC 42

The following BLAST results are available for this feature:

BLAST of Cucsa.117970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MT1B_VICFA	3.2e-09	39.19	Metallothionein-like protein 1B OS=Vicia faba GN=MT1B PE=3 SV=1	[more]
MT1_TRIRP	9.4e-09	36.49	Metallothionein-like protein 1 OS=Trifolium repens GN=MT1B PE=3 SV=1	[more]
MT1_PEA	2.7e-08	37.84	Metallothionein-like protein 1 OS=Pisum sativum GN=MTA PE=3 SV=1	[more]
MT1A_VICFA	4.7e-08	36.84	Metallothionein-like protein 1A OS=Vicia faba GN=MT1A PE=3 SV=1	[more]
MT1_CICAR	4.7e-08	36.49	Metallothionein-like protein 1 OS=Cicer arietinum PE=3 SV=1	[more]

BLAST of Cucsa.117970 vs. TrEMBL


Match Name	E-value	Identity	Description
O81529_MESCR	1.3e-09	65.00	Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
O81529_MESCR	8.1e+01	65.00	Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
A0A0J8BVT6_BETVU	8.6e-09	60.00	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173880 PE=4 S...	[more]
O81528_MESCR	2.5e-08	58.14	Metallothionein OS=Mesembryanthemum crystallinum PE=2 SV=1	[more]
A0A0J8C7E6_BETVU	4.3e-08	57.50	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g129570 PE=4 S...	[more]

BLAST of Cucsa.117970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|3342196\|gb\|AAC27530.1\|	1.9e-09	65.00	metallothionein [Mesembryanthemum crystallinum]	[more]
gi\|3342196\|gb\|AAC27530.1\|	1.2e+02	65.00	metallothionein [Mesembryanthemum crystallinum]	[more]
gi\|870853366\|gb\|KMT05247.1\|	1.2e-08	60.00	hypothetical protein BVRB_7g173880 [Beta vulgaris subsp. vulgaris]	[more]
gi\|3342194\|gb\|AAC27529.1\|	3.6e-08	58.14	metallothionein [Mesembryanthemum crystallinum]	[more]
gi\|870857961\|gb\|KMT09487.1\|	6.1e-08	57.50	hypothetical protein BVRB_6g129570 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.117970.1	Cucsa.117970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.160.10.10		coord: 24..71 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.117970	ClCG03G001560	Watermelon (Charleston Gray)	cgywcgB177

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None