Cucsa.108450 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.108450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00931 : 596857 .. 597436 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCACTGTTCAGGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTGTACATAACTAAAATTAAATTAATAGTTTTGGACAAACAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGGTCGGCGGCGTGTGGGCGAAGCGGCTGGACGTGGTGTCGTGGGAGGGAGTTGAACGG

mRNA sequence

GTTCACTGTTCAGGTCGAAGCTCGAGCGAGAAAATTATGATTGCAATTGGAAATCCAAAATTCAACCTGTACATAACTAAAATTAAATTAATAGTTTTGGACAAACAAAATTATCGATTAAACCCAGTTTACTCCTCCAAATGCTTACCCAAAATTTTCACTTCACATCCTGGATGGAAAACCACAAATCGATTCAAGAACTTCTCCAAAGGGAACCTTCAGACCAAGGAAAAGCCCCAACTTTAACCCTCAAATTATCCTTACATTTAGTTCTGTAATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGACAGACGGTCGGCGGCGTGTGGGCGAAGCGGCTGGACGTGGTGTCGTGGGAGGGAGTTGAACGG

Coding sequence (CDS)

ATGGGTGGTGAAACCCAAAACAAGACTTCACTAATTGCCGAAAAACTCACCCAAAACCCACCGGGGAGGAGATTGGACAGAGGGAAGATCGGCGCAGCGGGGCTCGGCGTTGGAGGAGAAGCTCGGCTCGCTCACGGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGCGGCCCGGAGAAAGAGATGGCGCGGCTCACAGCGTGGAGACGTCGTCGCTCACGGCTACTTGA

Protein sequence

MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVRPGERDGAAHSVETSSLTAT*
Homology
[Close]
BLAST of Cucsa.108450 vs. TrEMBL
Match: A0A0A0L650_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186715 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-26
Identity = 67/79 (84.81%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVR 60
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHG            VR
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHG------------VR 60

Query: 61 PGERDGAAHSVETSSLTAT 80
          PGERDGAAHSVETSSLTAT
Sbjct: 61 PGERDGAAHSVETSSLTAT 67

[Close]
BLAST of Cucsa.108450 vs. NCBI nr
Match: gi|700202312|gb|KGN57445.1| (hypothetical protein Csa_3G186715 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-26
Identity = 67/79 (84.81%), Postives = 67/79 (84.81%), Query Frame = 1 

Query: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHGVRPGERDGAAHSVR 60
          MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHG            VR
Sbjct: 1  MGGETQNKTSLIAEKLTQNPPGRRLDRGKIGAAGLGVGGEARLAHG------------VR 60

Query: 61 PGERDGAAHSVETSSLTAT 80
          PGERDGAAHSVETSSLTAT
Sbjct: 61 PGERDGAAHSVETSSLTAT 67

The following BLAST results are available for this feature:
BLAST of Cucsa.108450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L650_CUCSA1.3e-2684.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G186715 PE=4 SV=1[more]
BLAST of Cucsa.108450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202312|gb|KGN57445.1|1.8e-2684.81hypothetical protein Csa_3G186715 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.108450.1Cucsa.108450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.108450CsaV3_3G017770Cucumber (Chinese Long) v3cgycucB137
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.108450Cucurbita maxima (Rimu)cgycmaB0247
Cucsa.108450Cucurbita maxima (Rimu)cgycmaB0250
Cucsa.108450Cucurbita moschata (Rifu)cgycmoB0246
Cucsa.108450Cucurbita moschata (Rifu)cgycmoB0249
Cucsa.108450Wild cucumber (PI 183967)cgycpiB133
Cucsa.108450Cucumber (Chinese Long) v2cgycuB132
Cucsa.108450Melon (DHL92) v3.5.1cgymeB143
Cucsa.108450Melon (DHL92) v3.5.1cgymeB144
Cucsa.108450Watermelon (Charleston Gray)cgywcgB153
Cucsa.108450Watermelon (97103) v1cgywmB153
Cucsa.108450Cucurbita pepo (Zucchini)cgycpeB0242
Cucsa.108450Cucurbita pepo (Zucchini)cgycpeB0243
Cucsa.108450Bottle gourd (USVL1VR-Ls)cgylsiB144
Cucsa.108450Melon (DHL92) v3.6.1cgymedB143
Cucsa.108450Melon (DHL92) v3.6.1cgymedB144
Cucsa.108450Silver-seed gourdcarcgyB0216
Cucsa.108450Silver-seed gourdcarcgyB0856
Cucsa.108450Watermelon (97103) v2cgywmbB148
Cucsa.108450Wax gourdcgywgoB171