Cucsa.106040 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.106040
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Descriptionnudix hydrolase homolog 3
Locationscaffold00929 : 471462 .. 473202 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCATCACAAATGGTGACAAATTTAAGACGGATGTTTATTTGGTAACAACATTGGATCCAATTCCTTTGGAGGCGTTTACTCTTCAGGTTGGTGGTTAATCGTCTATTCTGTCATTTAATCCAAGCTAGATGTATGAATCCCACCCCGATGTAAATGTATGATATTTGAACTTCTAAATTTTTTGCAAGGGCCGTGAGGTGGAAAGGTAGTAGAGAGAACCAATATGTGCTTAGGTTTAGTTAAAGTGTTGATATAACATTAACTTTGCCATCACCAATTAGCTTAAGCTTATGGTTCAATTAGTGGTGATTAGCTTAAGCTTATGGTTCAATTAATAATTTAACACGGTATGAGAGAAGAGGTCTTGCCAAGCTCCTACAATATTATTTCTTCCTCGATTAATTTTGTTTTCCACTTGATAAGTCTTTTACAAATTTCCAAACCTCTACAAGCGATGGTATGGGTGAATTGGATTGCTATCATTAGATGCCCCTCCCACATTTATCAGCTCTTGGTAGGATACCATGGATGTGCTTTGAGCCTTTGACTTTGATAATGGACGTGAGATCAAAGAGAAAGGTGTAGATAGAAAAGTTTGGGTAACAGAAATTTAACCATTAGATCTTTGACATGTTGCTTTGTAGGTGCTTTTTATAATTTTATCGATTCATTTTTGTTAAAAGATTCATAATATTCAACCACATTGGCTGGTCTAGCGATAAAACGAATAGTAAAAGCCTATCTGAATTTTAATATTCTAGAATTTTCCCTTGAATACCAAATGGAGTATAGTCAATCAGTTGTCCCATAGAAAAAGGAAAaTTTAGAAGTATATGTATATTATATGTTTGCATGTCTTGTTGCTTCTCTTCGGTCCATGCTTAAACTTGTATTGCACTTAAATGAATTTTGTGCTTAAAACAGTACAGGCCAGAATGCATTAGAAACTGAACTTGCATGAGACATTGAATTTATATTTTTTGTTtAAATTTGATGTAGGAATCAGAAGTTTCTGCTGTTAAATATATACATTATCTGAAGTATAAGAGCTTACTTGGAAGTCAAAATTCTGAGTATGTCCCATATGATGTAGATGGGCAATATGGTCAACTTTTTGACATACTTACACAAAGGTACGCTCTTAGAAGTATCTGTTAGCATAGACTTCTCTTGACAGGCACAATATTCTCGAGGAGAAGATATTATTTTCTACGTGATGAAATTTGTATAATTCAGAGAAATGGTGGAATTCATGGTGGTCACTCATCCACATACTTTTTTTTCTCTCTTTTGAGTTTTTCCATAGAATGAACTGCAATAATATTTCTGTTTCCTTGTCACAAAAAGAAAGATGTGAAGGAGAGAGTACTCTTGAACAAGAGTAAACTGTAATCTATTATTGCTGTGGTGAACACTAAGCTGTAACGCCACTATGCTTCAATCTTTTACATGCAAACAATAATACATTCTACATGACATGATAATTTACACTCACATGCACCTAAGATTGAAGCTTCTATAGGATTTGAAAAATCACCCTTGTTGATTTTGGACCGGCAAAGTTACCTTTTCATGCTTGGCCATTTTTATCTGTATAAATTTACGTAGGTACCAAGTGGACAATGTGGCACGGAGTTTGACTTTAAAAAAGCAACTACAACGTTATGCTTCTGTTCCACTTAATGTTGAGGTAGCTCTCCATTTTAAATTTGTAGATCTTTCCAACTTAGGTCGAAATAT

mRNA sequence

CGCATCACAAATGGTGACAAATTTAAGACGGATGTTTATTTGGTAACAACATTGGATCCAATTCCTTTGGAGGCGTTTACTCTTCAGGAATCAGAAGTTTCTGCTGTTAAATATATACATTATCTGAAGTATAAGAGCTTACTTGGAAGTCAAAATTCTGAGTATGTCCCATATGATGTAGATGGGCAATATGGTCAACTTTTTGACATACTTACACAAAGGTACCAAGTGGACAATGTGGCACGGAGTTTGACTTTAAAAAAGCAACTACAACGTTATGCTTCTGTTCCACTTAATGTTGAGGTAGCTCTCCATTTTAAATTTGTAGATCTTTCCAACTTAGGTCGAAATAt

Coding sequence (CDS)

CGCATCACAAATGGTGACAAATTTAAGACGGATGTTTATTTGGTAACAACATTGGATCCAATTCCTTTGGAGGCGTTTACTCTTCAGGAATCAGAAGTTTCTGCTGTTAAATATATACATTATCTGAAGTATAAGAGCTTACTTGGAAGTCAAAATTCTGAGTATGTCCCATATGATGTAGATGGGCAATATGGTCAACTTTTTGACATACTTACACAAAGGTACCAAGTGGACAATGTGGCACGGAGTTTGACTTTAAAAAAGCAACTACAACGTTATGCTTCTGTTCCACTTAATGTTGAGGTAGCTCTCCATTTTAAATTTGTAGATCTTTCCAACTTAGGTCGAAATAT

Protein sequence

RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVALHFKFVDLSNLGRNX
Homology
[Close]
BLAST of Cucsa.106040 vs. Swiss-Prot
Match: NUDT3_ARATH (Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-26
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1 

Query: 2   ITNGDKFKT----DVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVP 61
           +TN  KF      DVYLVT L PIPLEAFTLQ+ EVSAVKY+ Y +Y++ L  ++  YVP
Sbjct: 109 VTNDGKFINNEFNDVYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVP 168

Query: 62  YDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEV 103
           YDV+G+YG+LFDI+ QR QV+  ARSL+L+KQLQRY+ V L  ++
Sbjct: 169 YDVNGEYGKLFDIIRQRCQVNTEARSLSLQKQLQRYSPVTLEAKL 213

[Close]
BLAST of Cucsa.106040 vs. TrEMBL
Match: A0A0A0K671_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431370 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-35
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV
Sbjct: 101 RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 160

Query: 61  DGQYGQLFDILTQRYQVDNV 81
           DGQYGQLFDILTQRY + ++
Sbjct: 161 DGQYGQLFDILTQRYALRSI 180

[Close]
BLAST of Cucsa.106040 vs. TrEMBL
Match: A0A0A0K9Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431390 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 1 

Query: 2   ITNGDKFK----TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVP 61
           ITNG +F      DVYLVTTL+PIP EAFTLQESEVSAVKY+HYL++KSLL S++ EY P
Sbjct: 114 ITNGGQFIDNEFADVYLVTTLNPIPFEAFTLQESEVSAVKYVHYLEFKSLLASKDPEYFP 173

Query: 62  YDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           YDV+ QYGQLFDI+ +RY+VDNVARSL L+KQLQRYAS+ LNVE+A
Sbjct: 174 YDVNAQYGQLFDIIAKRYKVDNVARSLALQKQLQRYASISLNVELA 219

[Close]
BLAST of Cucsa.106040 vs. TrEMBL
Match: A0A0A0KBN2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431380 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 80/105 (76.19%), Postives = 90/105 (85.71%), Query Frame = 1 

Query: 3   TNGDKFKT----DVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPY 62
           TNG +F      DVYLVTTLDPIPLEAFTLQESEVSAVKYIHYL YK+LL +++ EYVPY
Sbjct: 115 TNGGQFINNEFEDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLDYKNLLANEDPEYVPY 174

Query: 63  DVDG-QYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEV 103
           DV+  QYGQLFDI+ QRY+VDNVARS TL+KQLQRYASV LNVE+
Sbjct: 175 DVNAQQYGQLFDIIAQRYKVDNVARSSTLQKQLQRYASVSLNVEL 219

[Close]
BLAST of Cucsa.106040 vs. TrEMBL
Match: A0A072UWJ0_MEDTR (Nudix hydrolase-like protein OS=Medicago truncatula GN=MTR_3g437740 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-30
Identity = 71/105 (67.62%), Postives = 87/105 (82.86%), Query Frame = 1 

Query: 2   ITNGDKF----KTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVP 61
           +TN  KF      DV+LVTT+DPIPLEAFTLQE+EVSAVKYI Y +YKSLL  ++S+YVP
Sbjct: 104 VTNNGKFINNEYNDVFLVTTIDPIPLEAFTLQETEVSAVKYIAYDEYKSLLAKEDSDYVP 163

Query: 62  YDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEV 103
           YDV+G+YGQLFDI+ +RY+ + VARSLTL+KQL RYA V LNVE+
Sbjct: 164 YDVNGKYGQLFDIIEKRYKENTVARSLTLQKQLSRYAPVTLNVEL 208

[Close]
BLAST of Cucsa.106040 vs. TrEMBL
Match: M5X9N8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001658mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 6.2e-30
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 2   ITNGDKFKT----DVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVP 61
           +TN  KF      DVYLVTT+DPIPLEAFTLQE+EVSAVKYI Y +Y+SLL  ++ EYVP
Sbjct: 116 VTNDGKFINNEFNDVYLVTTVDPIPLEAFTLQETEVSAVKYISYEEYRSLLAKEDLEYVP 175

Query: 62  YDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           YDV+G+YGQLFDI+ +RY+ + +ARSL+L+KQLQRYA V L+ E+A
Sbjct: 176 YDVNGEYGQLFDIIARRYKENTIARSLSLQKQLQRYAPVSLSAELA 221

[Close]
BLAST of Cucsa.106040 vs. TAIR10
Match: AT1G79690.1 (AT1G79690.1 nudix hydrolase homolog 3)

HSP 1 Score: 120.6 bits (301), Expect = 6.7e-28
Identity = 61/105 (58.10%), Postives = 79/105 (75.24%), Query Frame = 1 

Query: 2   ITNGDKFKT----DVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVP 61
           +TN  KF      DVYLVT L PIPLEAFTLQ+ EVSAVKY+ Y +Y++ L  ++  YVP
Sbjct: 109 VTNDGKFINNEFNDVYLVTILHPIPLEAFTLQKEEVSAVKYVPYEEYRNFLSKEDPAYVP 168

Query: 62  YDVDGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEV 103
           YDV+G+YG+LFDI+ QR QV+  ARSL+L+KQLQRY+ V L  ++
Sbjct: 169 YDVNGEYGKLFDIIRQRCQVNTEARSLSLQKQLQRYSPVTLEAKL 213

[Close]
BLAST of Cucsa.106040 vs. NCBI nr
Match: gi|778728883|ref|XP_011659491.1| (PREDICTED: nudix hydrolase 3 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-49
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV
Sbjct: 107 RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 166

Query: 61  DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVE+A
Sbjct: 167 DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVELA 209

[Close]
BLAST of Cucsa.106040 vs. NCBI nr
Match: gi|659122540|ref|XP_008461197.1| (PREDICTED: nudix hydrolase 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNG+K  TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYK+LLGSQNSEYVPYDV
Sbjct: 117 RITNGEKI-TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKTLLGSQNSEYVPYDV 176

Query: 61  DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           DGQYGQLFDI+TQRY+VDNVARSLTLKKQLQRYASVPLNVE+A
Sbjct: 177 DGQYGQLFDIITQRYKVDNVARSLTLKKQLQRYASVPLNVELA 218

[Close]
BLAST of Cucsa.106040 vs. NCBI nr
Match: gi|659122542|ref|XP_008461198.1| (PREDICTED: nudix hydrolase 3-like isoform X3 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNG+K  TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYK+LLGSQNSEYVPYDV
Sbjct: 107 RITNGEKI-TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKTLLGSQNSEYVPYDV 166

Query: 61  DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           DGQYGQLFDI+TQRY+VDNVARSLTLKKQLQRYASVPLNVE+A
Sbjct: 167 DGQYGQLFDIITQRYKVDNVARSLTLKKQLQRYASVPLNVELA 208

[Close]
BLAST of Cucsa.106040 vs. NCBI nr
Match: gi|659122544|ref|XP_008461199.1| (PREDICTED: nudix hydrolase 3-like isoform X4 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNG+K  TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYK+LLGSQNSEYVPYDV
Sbjct: 11  RITNGEKI-TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKTLLGSQNSEYVPYDV 70

Query: 61  DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           DGQYGQLFDI+TQRY+VDNVARSLTLKKQLQRYASVPLNVE+A
Sbjct: 71  DGQYGQLFDIITQRYKVDNVARSLTLKKQLQRYASVPLNVELA 112

[Close]
BLAST of Cucsa.106040 vs. NCBI nr
Match: gi|659122538|ref|XP_008461196.1| (PREDICTED: nudix hydrolase 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.5e-45
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 1 

Query: 1   RITNGDKFKTDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKSLLGSQNSEYVPYDV 60
           RITNG+K  TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYK+LLGSQNSEYVPYDV
Sbjct: 123 RITNGEKI-TDVYLVTTLDPIPLEAFTLQESEVSAVKYIHYLKYKTLLGSQNSEYVPYDV 182

Query: 61  DGQYGQLFDILTQRYQVDNVARSLTLKKQLQRYASVPLNVEVA 104
           DGQYGQLFDI+TQRY+VDNVARSLTLKKQLQRYASVPLNVE+A
Sbjct: 183 DGQYGQLFDIITQRYKVDNVARSLTLKKQLQRYASVPLNVELA 224

The following BLAST results are available for this feature:
BLAST of Cucsa.106040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NUDT3_ARATH1.2e-2658.10Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1[more]
BLAST of Cucsa.106040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K671_CUCSA4.9e-3593.75Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431370 PE=4 SV=1[more]
A0A0A0K9Z2_CUCSA1.1e-3472.64Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431390 PE=4 SV=1[more]
A0A0A0KBN2_CUCSA3.2e-3476.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G431380 PE=4 SV=1[more]
A0A072UWJ0_MEDTR1.2e-3067.62Nudix hydrolase-like protein OS=Medicago truncatula GN=MTR_3g437740 PE=4 SV=1[more]
M5X9N8_PRUPE6.2e-3065.09Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001658mg PE=4 SV=1[more]
BLAST of Cucsa.106040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G79690.16.7e-2858.10 nudix hydrolase homolog 3[more]
BLAST of Cucsa.106040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728883|ref|XP_011659491.1|1.0e-4999.03PREDICTED: nudix hydrolase 3 [Cucumis sativus][more]
gi|659122540|ref|XP_008461197.1|1.5e-4593.20PREDICTED: nudix hydrolase 3-like isoform X2 [Cucumis melo][more]
gi|659122542|ref|XP_008461198.1|1.5e-4593.20PREDICTED: nudix hydrolase 3-like isoform X3 [Cucumis melo][more]
gi|659122544|ref|XP_008461199.1|1.5e-4593.20PREDICTED: nudix hydrolase 3-like isoform X4 [Cucumis melo][more]
gi|659122538|ref|XP_008461196.1|1.5e-4593.20PREDICTED: nudix hydrolase 3-like isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006694 steroid biosynthetic process
biological_process GO:0016114 terpenoid biosynthetic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005773 vacuole
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004452 isopentenyl-diphosphate delta-isomerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.106040.1Cucsa.106040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23422DIPEPTIDYL PEPTIDASE III-RELATEDcoord: 11..90
score: 4.7
NoneNo IPR availablePANTHERPTHR23422:SF9NUDIX HYDROLASE 3coord: 11..90
score: 4.7