Cucsa.105190 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.105190
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
Description39S ribosomal L41-A, mitochondrial
Locationscaffold00929 : 1556 .. 4262 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTTCATCTCTTCCCTTCAGCGGGTTTAAATTCCACCGCCGTGGGGTAATTCCGACCGCCGTCTGATAAATAACCTAGCCGAATAAATTTCCTTTAAAGGTTCTTGTATTCTTCTTTTGTTTGATTGAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTATTCATTTCTCCTCCATCGATCCTAATATAATTTTAGGTTTTATGCTTATTTACGTTGGACGATAACATGTTTGATTGTTTGATTAATTAGTTTCGAGTTACTGCTTCTGGATCCACTTGTAATTTAGTAAAGAATTGAAAATCGTTATTGCTTCTAGGAATGTGATGTGATTAGTAGGCTGTTGAGTTACTTCTAATACTAGATTTTTCTATTTGAATTTTGTATGGTTCTATCGAACATTTCTGTTGTTTAAAGTGTGTAAATTTCTTGCAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGGTATTTTTGCTAATAGTTGTTTTTTCTAAAATTTAGAACTGATATCTCCCTTTCTATCCACGACACATCCAAGTATTCTGAATATGATTGTGGAGACTATAATAGGCTACCAGGGAAAAGGTGTACAAAATCTGTATTGGCTTTGTATGCTTCCCGTAGTTCTTGGGTTACCTTTTTTACTTCTTCTTTACTCACTATATGTGGGTGGGGAAATCAACCTCGAACCTGAAAATGAATTATTTTTTtGGTTACTTTTTTGTGTTCCTTTCGAAATTTATTAGATTTATATGCTTTCCTGAAATCTGAATTCTGATTTGTATTCTCTCCTTATTTCCCTTAAATGAATTATTTCTTGCTGGTATTTCGTGAGTGATTTCGTGCAGAGAGCTTTTATGCTACAATTTTTTCTAATAGCTTCCAAAACGATTCTTTTGAGTCAAGTACTTGTGGGGAAAGTAGAGCTAGGGGACCTTTTGTCTGCTCTGCTAAGGAAATTTGTTTATGTCTGGTTACAAGGGAACTAGCTCTGGCTCCTTGACCTTTGAAGCTTTTGCTGCTCTTTTAAGAGTTTTGTCATAATTCTGTATAACAAGACATGACACAATCCTAAACCCTAAGCCCCAAAATCCTATAGGCATTTCTTAGTTGGATTCCCTTCCTGTAGAGGGAGTTCGTACGTGTATTTTTCCAATATTTTCTCAATGAAGGTTACTTTTTATTAAAAAGAAAAAGAAGAAAAAGAAAGTTTTGACATAATACTGTGTAACAAGGCATTGAAATGTCAAGATTGACGGTTCCTTACAGCTCACAATTTCAATCCCATGCAACATTTTGATATCTTTTTTTtGTTCTTGTACGTTTCATGTTTAGAAGATTAACATTCATAAGTATGTCATTAATTGATTTCATTGTAAGTTGGCTCACAGGCCTATTTAGAGGTCAACTTGAACAATTGAAAATAACCAACCGTTACTACTATTCAACTGTAACTTGTGTCAATGTTACTACGAATTTTTCTTGGAGGCAAAACCGTGAAATATATGGATGGTTTGTGCAAAATATATGTTTTTCAGTGCCTCCTACTTAGTTTGCTGTTTCTCTTCTGTTGTGTGTATTTTACACCGTGCATCATTCATTGGTATTACACCCTCTAGAGATTTCTTGTGTTGCACCATTTTTTATGGAACTTGGTTATTGTATTATGATAATATAGCCTGTCATGTTAAGATAAATATGGCAGGCTGCTTGTTCATGAGTTCTTGAAACTTTCATTAATTTTGTTATTTTAACATGTTTGGCATAATCACATTAACTATAGATATTCAACTTAAAAGGATTGGATGTCAATTGTGTGTTGTCAAACTGCATTTTAGATTTGCGCAAGCGTATTGAATTCCAGATAAAGATATAATTTGTTCTTTGTTTGCAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAAGCAAAGAGGTATAACATCTTGTAACGCTCTGTGTTCTTTTCCCCTCAAATTAATTTGATTACAGTGGTATTCGATTCAAACCCTAAATTTTCTTTTACTTCAGATTTGAGTAATTATTAAGGCAAGTGAGCCTTAATTAGCTTAAATTAGAATGTTCTTTTAGGTAAACAAATTTAGTAGTTTAATTTTGAACTCTCTTCTGCCGAGTAGGTTTGTACTGACCCATCAACATATATTGCAGCATACGCGAATGATGTTGGTGATGGCATCGAGGGGACTTGAAGCAAAAGACCTAGGATTCTTTTACTAGTTGTTAGCAAGTTCAGGCTCCGTTTTGGTCTTGAGTTGAAAAACTTGTTTCAAAGAACAAATAACCGAGGAGAAAAACGGAAACGGAACTCTTATTTTCACTATATATGAAAACAAGTTGAATCCGAGATTTGAAGTTAAAATTTGGAAGCTGTGTTTGGTTTTGAATTTTTAAGTATTAAGGTTATCGTGCTTTTTGCCTTGTTGGCGATTTGGTTTCAATGGAGGGAAATGATGCACTAAATTTATGCCAAAGAAAAGCATA

mRNA sequence

CTGTTCATCTCTTCCCTTCAGCGGGTTTAAATTCCACCGCCGTGGGGTAATTCCGACCGCCGTCTGATAAATAACCTAGCCGAATAAATTTCCTTTAAAGGTTCTTGTATTCTTCTTTTGTTTGATTGAGGCGATAAACTTGAGAAATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAAGCAAAGAGGTTTGTACTGACCCATCAACATATATTGCAGCATACGCGAATGATGTTGGTGATGGCATCGAGGGGACTTGAAGCAAAAGACCTAGGATTCTTTTACTAGTTGTTAGCAAGTTCAGGCTCCGTTTTGGTCTTGAGTTGAAAAACTTGTTTCAAAGAACAAATAACCGAGGAGAAAAACGGAAACGGAACTCTTATTTTCACTATATATGAAAACAAGTTGAATCCGAGATTTGAAGTTAAAATTTGGAAGCTGTGTTTGGTTTTGAATTTTTAAGTATTAAGGTTATCGTGCTTTTTGCCTTGTTGGCGATTTGGTTTCAATGGAGGGAAATGATGCACTAAATTTATGCCAAAGAAAAGCATA

Coding sequence (CDS)

ATGGCGTTGGGACTAATATTGGGACTCGGAAGAGTAATGCGGAGAAAACGTACATCTTCTCTCGACATTCTTTCATCTAAACGAGCTCCACGAGATTACTACAAGGGCAAGAATTGCAAGCCTACTGGTTTCCATACGCGCAAAGGTGGATATGTGGTGGTGCCAGAGAAACTGCCTAACTATGTCGTCCCTGATTTGTCTGATTTCAAGCTCAAACCTTATGTATCTCAATGCCCCATAGAACTTAAGACCAGTGACAACAATGAATCAGCTAAATCATAA

Protein sequence

MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS*
Homology
[Close]
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41A_XENLA (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-08
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          +A GL+ G  R+            +SK+ P  Y KG+  K  G+ T  G +V V E +P 
Sbjct: 7  IARGLVRGADRMAE---------CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPV 66

Query: 61 YVVPDLSDFKLKPYVS 77
          +VVPDL+ FKLKPYVS
Sbjct: 67 FVVPDLTGFKLKPYVS 73

[Close]
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41B_XENLA (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 32/74 (43.24%), Postives = 43/74 (58.11%), Query Frame = 1 

Query: 3  LGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYV 62
          +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P +V
Sbjct: 1  MGLITKIARGLVRGADRMAEC-TSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLSDFKLKPYVS 77
          VPDL+ FKLKPYVS
Sbjct: 61 VPDLTGFKLKPYVS 73

[Close]
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_MOUSE (39S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS 77
          +SKR PR + K +  K TG +T    +V + E +P +VVPDL+ FKLKPYV+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFKLKPYVN 73

[Close]
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_RAT (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-07
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 

Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS 77
          +SKR PR + K +  K TGF+T +  +V + E +P +VVPDL+ FKLKPYV+
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNRK-FVQIKEMVPEFVVPDLTGFKLKPYVN 72

[Close]
BLAST of Cucsa.105190 vs. Swiss-Prot
Match: RM41_HUMAN (39S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 1 

Query: 25 SSKRAPRDYY--KGKNCKPTGFHTRKGGYVVVPEKLPNYVVPDLSDFKLKPYVS 77
          +SKR PR +   KG+  K  GF T    +V + E +P +VVPDL+ FKLKPYVS
Sbjct: 22 TSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPEFVVPDLTGFKLKPYVS 75

[Close]
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0A0KBX4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433300 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 94
          YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 93

[Close]
BLAST of Cucsa.105190 vs. TrEMBL
Match: B9HAL7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07000g PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-39
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLI G+GR MRRKRTSSLDILSSKRAPR YYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MPLGLITGIGRAMRRKRTSSLDILSSKRAPRTYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          YVVPDL+DFKLKPYVSQCP E+KT++ +E AK
Sbjct: 61 YVVPDLTDFKLKPYVSQCPTEVKTTEASELAK 92

[Close]
BLAST of Cucsa.105190 vs. TrEMBL
Match: A5AXC0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06410 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-38
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+GR  RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV++ EKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLMQEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 94
          YVVPDL+DFKLKPYVSQCP E+KT++  E+A+S
Sbjct: 61 YVVPDLTDFKLKPYVSQCPREVKTNEATEAAQS 93

[Close]
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0J8CA70_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132170 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 6.4e-38
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLILG+GR MRRKRTSSLDILSSKRAPR+YYKGKNCKPTGFHTRKGGYVVV EKLPN
Sbjct: 1  MPLGLILGIGRAMRRKRTSSLDILSSKRAPRNYYKGKNCKPTGFHTRKGGYVVVQEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNES 91
          YVVPDL+DFKLKPYVSQCP+  KT++N  S
Sbjct: 61 YVVPDLTDFKLKPYVSQCPLTAKTTENTSS 90

[Close]
BLAST of Cucsa.105190 vs. TrEMBL
Match: A0A0B0MP49_GOSAR (39S ribosomal L41-A, mitochondrial OS=Gossypium arboreum GN=F383_07772 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLILG+GR  RRKRTSSLDILSSKRAPRDYYKGKNCK TGFHTRKGGYVV+ EKLPN
Sbjct: 1  MPLGLILGIGRTFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVMQEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          YVVPDL+DFKLKPYVSQCP E+KT++  ESAK
Sbjct: 61 YVVPDLTDFKLKPYVSQCPTEVKTAEAAESAK 92

[Close]
BLAST of Cucsa.105190 vs. TAIR10
Match: AT5G39800.1 (AT5G39800.1 Mitochondrial ribosomal protein L27)

HSP 1 Score: 152.9 bits (385), Expect = 9.7e-38
Identity = 68/89 (76.40%), Postives = 82/89 (92.13%), Query Frame = 1 

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          PDL+ FKLKPYVSQCPI++ T+++ E++K
Sbjct: 66 PDLTGFKLKPYVSQCPIQVNTNESTEASK 94

[Close]
BLAST of Cucsa.105190 vs. TAIR10
Match: AT5G40080.1 (AT5G40080.1 Mitochondrial ribosomal protein L27)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-37
Identity = 67/89 (75.28%), Postives = 81/89 (91.01%), Query Frame = 1 

Query: 4  GLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYVV 63
          GL++G+GR  RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNYVV
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          PDL+ FKLKPYVSQCP+++ T+++ E++K
Sbjct: 66 PDLTGFKLKPYVSQCPLQVNTNESTEASK 94

[Close]
BLAST of Cucsa.105190 vs. TAIR10
Match: AT4G09012.1 (AT4G09012.1 Mitochondrial ribosomal protein L27)

HSP 1 Score: 143.3 bits (360), Expect = 7.7e-35
Identity = 68/93 (73.12%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 1   MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
           M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YVVPDLSDFKLKPYVSQCPIEL-KTSDNNESAK 93
           YVVPDL+ FKLKPYVSQCP+++ KT+++ E++K
Sbjct: 135 YVVPDLTGFKLKPYVSQCPLDVNKTNESTEASK 166

[Close]
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|449436114|ref|XP_004135839.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.4e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 94
          YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 93

[Close]
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|659122314|ref|XP_008461075.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 94
          YVVPDLSDFKLKPYVSQCPIEL TSDN ESAKS
Sbjct: 61 YVVPDLSDFKLKPYVSQCPIELNTSDNTESAKS 93

[Close]
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|1009146224|ref|XP_015890766.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Ziziphus jujuba])

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR  RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVV EKLPN
Sbjct: 1  MALGLILGLGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVNEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          YVVPDL+DFKLKPYVSQCPIE+KT++   +AK
Sbjct: 61 YVVPDLTDFKLKPYVSQCPIEVKTAEATAAAK 92

[Close]
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|224090469|ref|XP_002308991.1| (hypothetical protein POPTR_0006s07000g [Populus trichocarpa])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 79/92 (85.87%), Postives = 85/92 (92.39%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLI G+GR MRRKRTSSLDILSSKRAPR YYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MPLGLITGIGRAMRRKRTSSLDILSSKRAPRTYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAK 93
          YVVPDL+DFKLKPYVSQCP E+KT++ +E AK
Sbjct: 61 YVVPDLTDFKLKPYVSQCPTEVKTTEASELAK 92

[Close]
BLAST of Cucsa.105190 vs. NCBI nr
Match: gi|225459215|ref|XP_002285745.1| (PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera])

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 1 

Query: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+GR  RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV++ EKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVLMQEKLPN 60

Query: 61 YVVPDLSDFKLKPYVSQCPIELKTSDNNESAKS 94
          YVVPDL+DFKLKPYVSQCP E+KT++  E+A+S
Sbjct: 61 YVVPDLTDFKLKPYVSQCPREVKTNEATEAAQS 93

The following BLAST results are available for this feature:
BLAST of Cucsa.105190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RM41A_XENLA3.4e-0842.1139S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis GN=mrpl41-a PE=2 SV... [more]
RM41B_XENLA5.8e-0843.2439S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis GN=mrpl41-b PE=2 SV... [more]
RM41_MOUSE1.3e-0748.0839S ribosomal protein L41, mitochondrial OS=Mus musculus GN=Mrpl41 PE=1 SV=1[more]
RM41_RAT1.3e-0750.0039S ribosomal protein L41, mitochondrial OS=Rattus norvegicus GN=Mrpl41 PE=1 SV=... [more]
RM41_HUMAN1.9e-0650.0039S ribosomal protein L41, mitochondrial OS=Homo sapiens GN=MRPL41 PE=1 SV=1[more]
BLAST of Cucsa.105190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX4_CUCSA3.7e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G433300 PE=4 SV=1[more]
B9HAL7_POPTR9.9e-3985.87Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07000g PE=4 SV=1[more]
A5AXC0_VITVI1.7e-3883.87Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06410 PE=4 SV=... [more]
A0A0J8CA70_BETVU6.4e-3885.56Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132170 PE=4 S... [more]
A0A0B0MP49_GOSAR1.1e-3784.7839S ribosomal L41-A, mitochondrial OS=Gossypium arboreum GN=F383_07772 PE=4 SV=1[more]
BLAST of Cucsa.105190 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39800.19.7e-3876.40 Mitochondrial ribosomal protein L27[more]
AT5G40080.12.2e-3775.28 Mitochondrial ribosomal protein L27[more]
AT4G09012.17.7e-3573.12 Mitochondrial ribosomal protein L27[more]
BLAST of Cucsa.105190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449436114|ref|XP_004135839.1|5.4e-46100.00PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis sativus][more]
gi|659122314|ref|XP_008461075.1|1.0e-4497.85PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Cucumis melo][more]
gi|1009146224|ref|XP_015890766.1|2.8e-3988.04PREDICTED: 39S ribosomal protein L41-A, mitochondrial-like [Ziziphus jujuba][more]
gi|224090469|ref|XP_002308991.1|1.4e-3885.87hypothetical protein POPTR_0006s07000g [Populus trichocarpa][more]
gi|225459215|ref|XP_002285745.1|2.4e-3883.87PREDICTED: 39S ribosomal protein L41-A, mitochondrial [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019189Ribosomal_L27/L41_mit
IPR019189Ribosomal_L27/L41_mit
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.105190.1Cucsa.105190.1mRNA
Cucsa.105190.2Cucsa.105190.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019189Ribosomal protein L27/L41, mitochondrialPFAMPF09809MRP-L27coord: 24..83
score: 5.6
NoneNo IPR availablePANTHERPTHR21338MITOCHONDRIAL RIBOSOMAL PROTEIN L41coord: 1..82
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.105190Cla015390Watermelon (97103) v1cgywmB142
Cucsa.105190Csa7G433300Cucumber (Chinese Long) v2cgycuB126
Cucsa.105190MELO3C023395Melon (DHL92) v3.5.1cgymeB133
Cucsa.105190ClCG09G002640Watermelon (Charleston Gray)cgywcgB141
Cucsa.105190CSPI07G20870Wild cucumber (PI 183967)cgycpiB127
Cucsa.105190Lsi02G027350Bottle gourd (USVL1VR-Ls)cgylsiB133
Cucsa.105190MELO3C023395.2Melon (DHL92) v3.6.1cgymedB133
Cucsa.105190CsaV3_7G032690Cucumber (Chinese Long) v3cgycucB131
Cucsa.105190Cla97C09G164780Watermelon (97103) v2cgywmbB141
Cucsa.105190Bhi09G000047Wax gourdcgywgoB162
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None