Cucsa.103190 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.103190
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BTB/POZ domain-containing protein
Location	scaffold00927 : 2043409 .. 2044982 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCCTCTGGCATCCAAATCATCATATTTAAAGCGACAATTGGCCACAGCATCCGACGTTACCCTCACTCCACCGCTCAAATTAACCTCCAAAATATTCACTCTAGTCGCCGATTTTTGCTACGGTGCTCCCATCTTAATAACGCCCTTCAACGTCGCCGCACTTAGAACGGCGGCGGAGTTGCTCGAAATGTCCGACACGGAAAATAATACCAACGACGAAAACTTGGTGGACGTCACCGAAAAATACTTCCGCCGAGTGGTGGCCGTGAACCGGGATTATGCATCGGTGGTGTTCCGGTCGTGTTTGGAGCTGCTGCCGGAGGCTGAAACCATGGCGTATTTGGGTAGTAGATGTCTTGAAGCCTGGAGTTTGGAGGATGAGGGAGATAATGGAGACATTACCTGCTTTGAAGATTTCAAATGCGTGGATGTGGAGAATTTTATGGTCTTGGCTTCGTCGCTGAACCGCCGGTTTAAATGCCATGATTTAATCTACAATATCGCTCTTCTTTATCTCAAGGTAAGTTTTTTCATTCCTTCTAAATTTTTATTTTTTTAATAAACACATTCATATGCACCACAGTTTGTAAAATAACAATAATAATGATACTTTATTTATTAATTAATTTGTATAAAAATATCACAGCTTATTTGATTCATAATACATAGTAATTTATTTTGGTCTATTTGAAGCAACCCTACAAAGAGTGTGAATACAATGGTTTACAATGAAAATGGCAGGGACGTGGAGGAAAGATCACAGAAGACCAAAAGGTATTAATATGCAATTTCATAGACTGCGACAAGCTCTCCCCCAACTTACTCCTACACGCAGTTCAAAACCCACTGATGCCCCTCAGATTCGTGGTCCGCGCCATGCTAATCGAACAGCTCAATACTCGTCACTCCATTTTCTCCACCACTACGGTCGCCGCCGCAGCCACCAAACCTCTACCGCCGCGTCCTGTTCCCAAGGACCCCCTCACTCTCGGCGCAATTCTCAAGCGCGACGCCGCCGCTCGCGAGTCGGCCAAGTTAAAGGCGGCCATGCACGCCACAAATTCTCGCATACGAACCCTCGAATCCCAACTCTCCTCCATGAAGAAGAAGCTCCAAGATTCTGAGAAACAGAGGAGTTTGTCCCAGGACGCTGGCCGTGGTCGTTCCGCTAGCTTTCATTATGGTGACGAGAAGAGTAGCTGTGATAATAATAATAGCAAGGTTGTGGCTAGAGGCCAACGTGGGTCCACTTCCTTTTCTGTTTCTCGAATGAGTGCTGATTTTAAAACAGATTACTTTAAGTTTGGTGGTGGGTGCAAGCCATCCTCGGATCGTGGGTCGTCGTCGAATCATGAAGGGGCTAGGAAATCTGGGAGAAGTAGTAGTTTTGGACAGAGATTGATGAATGGGATTAAGAATGTGTTTCGGGTGTCGAGTTTAGGAGAAACAGAGAGTAAAGTTCAGAACAGAGGTGATGAAGAGGAAGGGGAAGATTTGTTTGAAGAGGAGGGAGATGATGATGGGGATGATGATATTGTTGTAATGAGAAGAAATCAGCTTTATGTTAATTAG

mRNA sequence

GATCCTCTGGCATCCAAATCATCATATTTAAAGCGACAATTGGCCACAGCATCCGACGTTACCCTCACTCCACCGCTCAAATTAACCTCCAAAATATTCACTCTAGTCGCCGATTTTTGCTACGGTGCTCCCATCTTAATAACGCCCTTCAACGTCGCCGCACTTAGAACGGCGGCGGAGTTGCTCGAAATGTCCGACACGGAAAATAATACCAACGACGAAAACTTGGTGGACGTCACCGAAAAATACTTCCGCCGAGTGGTGGCCGTGAACCGGGATTATGCATCGGTGGTGTTCCGGTCGTGTTTGGAGCTGCTGCCGGAGGCTGAAACCATGGCGTATTTGGGTAGTAGATGTCTTGAAGCCTGGAGTTTGGAGGATGAGGGAGATAATGGAGACATTACCTGCTTTGAAGATTTCAAATGCGTGGATGTGGAGAATTTTATGGTCTTGGCTTCGTCGCTGAACCGCCGGTTTAAATGCCATGATTTAATCTACAATATCGCTCTTCTTTATCTCAAGGGACGTGGAGGAAAGATCACAGAAGACCAAAAGGTATTAATATGCAATTTCATAGACTGCGACAAGCTCTCCCCCAACTTACTCCTACACGCAGTTCAAAACCCACTGATGCCCCTCAGATTCGTGGTCCGCGCCATGCTAATCGAACAGCTCAATACTCGTCACTCCATTTTCTCCACCACTACGGTCGCCGCCGCAGCCACCAAACCTCTACCGCCGCGTCCTGTTCCCAAGGACCCCCTCACTCTCGGCGCAATTCTCAAGCGCGACGCCGCCGCTCGCGAGTCGGCCAAGTTAAAGGCGGCCATGCACGCCACAAATTCTCGCATACGAACCCTCGAATCCCAACTCTCCTCCATGAAGAAGAAGCTCCAAGATTCTGAGAAACAGAGGAGTTTGTCCCAGGACGCTGGCCGTGGTCGTTCCGCTAGCTTTCATTATGGTGACGAGAAGAGTAGCTGTGATAATAATAATAGCAAGGTTGTGGCTAGAGGCCAACGTGGGTCCACTTCCTTTTCTGTTTCTCGAATGAGTGCTGATTTTAAAACAGATTACTTTAAGTTTGGTGGTGGGTGCAAGCCATCCTCGGATCGTGGGTCGTCGTCGAATCATGAAGGGGCTAGGAAATCTGGGAGAAGTAGTAGTTTTGGACAGAGATTGATGAATGGGATTAAGAATGTGTTTCGGGTGTCGAGTTTAGGAGAAACAGAGAGTAAAGTTCAGAACAGAGGTGATGAAGAGGAAGGGGAAGATTTGTTTGAAGAGGAGGGAGATGATGATGGGGATGATGATATTGTTGTAATGAGAAGAAATCAGCTTTATGTTAATTAG

Coding sequence (CDS)

ATGTCCGACACGGAAAATAATACCAACGACGAAAACTTGGTGGACGTCACCGAAAAATACTTCCGCCGAGTGGTGGCCGTGAACCGGGATTATGCATCGGTGGTGTTCCGGTCGTGTTTGGAGCTGCTGCCGGAGGCTGAAACCATGGCGTATTTGGGTAGTAGATGTCTTGAAGCCTGGAGTTTGGAGGATGAGGGAGATAATGGAGACATTACCTGCTTTGAAGATTTCAAATGCGTGGATGTGGAGAATTTTATGGTCTTGGCTTCGTCGCTGAACCGCCGGTTTAAATGCCATGATTTAATCTACAATATCGCTCTTCTTTATCTCAAGGGACGTGGAGGAAAGATCACAGAAGACCAAAAGGTATTAATATGCAATTTCATAGACTGCGACAAGCTCTCCCCCAACTTACTCCTACACGCAGTTCAAAACCCACTGATGCCCCTCAGATTCGTGGTCCGCGCCATGCTAATCGAACAGCTCAATACTCGTCACTCCATTTTCTCCACCACTACGGTCGCCGCCGCAGCCACCAAACCTCTACCGCCGCGTCCTGTTCCCAAGGACCCCCTCACTCTCGGCGCAATTCTCAAGCGCGACGCCGCCGCTCGCGAGTCGGCCAAGTTAAAGGCGGCCATGCACGCCACAAATTCTCGCATACGAACCCTCGAATCCCAACTCTCCTCCATGAAGAAGAAGCTCCAAGATTCTGAGAAACAGAGGAGTTTGTCCCAGGACGCTGGCCGTGGTCGTTCCGCTAGCTTTCATTATGGTGACGAGAAGAGTAGCTGTGATAATAATAATAGCAAGGTTGTGGCTAGAGGCCAACGTGGGTCCACTTCCTTTTCTGTTTCTCGAATGAGTGCTGATTTTAAAACAGATTACTTTAAGTTTGGTGGTGGGTGCAAGCCATCCTCGGATCGTGGGTCGTCGTCGAATCATGAAGGGGCTAGGAAATCTGGGAGAAGTAGTAGTTTTGGACAGAGATTGATGAATGGGATTAAGAATGTGTTTCGGGTGTCGAGTTTAGGAGAAACAGAGAGTAAAGTTCAGAACAGAGGTGATGAAGAGGAAGGGGAAGATTTGTTTGAAGAGGAGGGAGATGATGATGGGGATGATGATATTGTTGTAATGAGAAGAAATCAGCTTTATGTTAATTAG

Protein sequence

MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEGEDLFEEEGDDDGDDDIVVMRRNQLYVN*

Homology

[Close]

BLAST of Cucsa.103190 vs. Swiss-Prot
Match: Y3990_ARATH (BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana GN=At3g49900 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.5e-59
Identity = 162/387 (41.86%), Postives = 222/387 (57.36%), Query Frame = 1


Query: 11  ENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDEGDNGD 70
           ++L ++TE Y RRVV VN DY  +V RSCL LLPE+ET A+L  RC+EA  L + GD   
Sbjct: 156 DSLRNLTESYLRRVVFVNVDYIQIVLRSCLLLLPESETTAFLIGRCVEA--LMEIGDGDC 215

Query: 71  ITCF-EDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITEDQKVLICNFI 130
           +  F E+   +   +F V+A ++ +RF  HDL+Y I   Y+K   G++TE++KV ICN I
Sbjct: 216 VNEFLEEAVKLPAGDFNVVADAVQQRFPRHDLLYRIVDAYVKEHDGEMTEEEKVQICNSI 275

Query: 131 DCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPR---- 190
           DCDKLSP LLLHAVQNP MPLRF+VRAML EQLNTRHSI     VAA+   P   R    
Sbjct: 276 DCDKLSPPLLLHAVQNPKMPLRFIVRAMLQEQLNTRHSIM-VAAVAASCAAPTGVRHREI 335

Query: 191 --PVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKL-QDSEKQ- 250
                   +TLG++L+RD AAR++ +L+AAM++T+SRI +LE +L +MK+ L ++SEKQ 
Sbjct: 336 ATEARDSSVTLGSLLQRDTAARQNCRLRAAMNSTSSRIESLEKELDTMKRFLSKESEKQK 395

Query: 251 --RSLSQDAGR-----GRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKT 310
             R++ +   R      RSASFH   + S     N     RG RG    SVS +S  ++ 
Sbjct: 396 SDRNIVESRSRSVMDSARSASFHCVHQPS-----NVNKTQRGDRG----SVSNLSTTYRR 455

Query: 311 DYFKFGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNR 370
                         R +S      +K     S G+RL+ GIKN F       T SK   +
Sbjct: 456 --------------RRASPPQAQPQK-----SIGKRLIMGIKNAF------STSSKQVPK 505

Query: 371 GDEEEGEDLFEEEGD-----DDGDDDI 377
            +    E++++   D     DD DD+I
Sbjct: 516 KNAYAVEEIYDGLEDFVWIKDDNDDNI 505

[Close]

BLAST of Cucsa.103190 vs. Swiss-Prot
Match: Y5656_ARATH (BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 9.4e-12
Identity = 60/220 (27.27%), Postives = 98/220 (44.55%), Query Frame = 1


Query: 83  ENFMVLASSLNRRFKCHDL-IYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLH 142
           + F  LA SL  + + +D  +Y    +YLK     ++E ++  IC  +DC KL+     H
Sbjct: 450 DKFYNLAISLPDQARLYDDGLYRAVDVYLKAHPW-VSEAEREKICGVMDCQKLTLEACTH 509

Query: 143 AVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPRPVPKDPLTLGAILKRD 202
           A QN  +PLR VV+ +  EQL  RH+I  T   A + +      P P   +    I + D
Sbjct: 510 AAQNERLPLRAVVQVLFFEQLQLRHAIAGTLLAAQSPSTSQSTEPRPSAAIRNLTITEED 569

Query: 203 A----------------AARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRS-- 262
                              RE+  L+  M    +R+  LE + S+MKK +   +K+ S  
Sbjct: 570 GDEAEGERQVDAGKWKKTVRENQVLRLDMDTMRTRVHRLERECSNMKKVIAKIDKEGSSP 629

Query: 263 -LSQDAGRGRSASFHYGDEKSS--CDNNNSKVVARGQRGS 281
             + D  R  S +  +G +  +  CD++ + +V    R S
Sbjct: 630 ATTTDRPRSWSITKKFGCKFKTQVCDSHEATMVDHRSRRS 668

[Close]

BLAST of Cucsa.103190 vs. Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-10
Identity = 48/174 (27.59%), Postives = 78/174 (44.83%), Query Frame = 1


Query: 80  VDVENFMVLASSLNRRFK-CHDLIYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNL 139
           + +  F VLA SL    + C D +Y     YLK     +TE ++  +C  +DC KLS + 
Sbjct: 524 LSLTKFQVLAESLPESARACDDGLYRAVDSYLKAHP-TLTEHERKRLCRVMDCQKLSFDA 583

Query: 140 LLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPRPVPKDPLTLGAIL 199
            +HA QN  +PLR VV+ +  EQ+   +++ S++    +++        P  P T     
Sbjct: 584 CMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTT----- 643

Query: 200 KRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSLSQDAGRGR 253
           +R          +    A    I TL+ +L SMK K  + + +    Q    GR
Sbjct: 644 RRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDGR 691

[Close]

BLAST of Cucsa.103190 vs. Swiss-Prot
Match: Y3084_ARATH (BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-09
Identity = 59/217 (27.19%), Postives = 94/217 (43.32%), Query Frame = 1


Query: 65  EGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITEDQKVL 124
           +G  G+I    + K     N  VL     R +   D +Y    +Y K     I E++K  
Sbjct: 364 DGVLGEIASDANLKPEQFYNLAVLLPVQARVYD--DGLYRAVDIYFKTHSW-ILEEEKEK 423

Query: 125 ICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPP 184
           IC+ +DC KL+     HA QN  +PLR VV+ + +EQL  R  I  T        K    
Sbjct: 424 ICSVMDCRKLTVEGCTHAAQNERLPLRAVVQVLFLEQLQLRQVITGTLLTEEDGDK---- 483

Query: 185 RPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSL 244
                   T+  + +   A +E+  L+  M    +R+  LE +   +KK +   +K+  L
Sbjct: 484 --------TVVDLGRWKEAVKENQVLRLDMDTMRTRVNQLEKECLYLKKVIAKIDKESLL 543

Query: 245 SQDAGRGR-SASFHYGDEKSS--CDNNNSKVVARGQR 279
               G G+ S    +G + S+  CD+  + +V R  R
Sbjct: 544 KAKHGAGKWSIGKKFGCKFSAQVCDSQEATMVDRRSR 565

[Close]

BLAST of Cucsa.103190 vs. Swiss-Prot
Match: Y5813_ARATH (BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.4e-09
Identity = 62/227 (27.31%), Postives = 99/227 (43.61%), Query Frame = 1


Query: 85  FMVLASSLNRRFK-CHDLIYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLHAV 144
           F+ L  ++   F+  HD +Y     +L+     I++++K  IC++++C KLS    L  V
Sbjct: 391 FIELIETVPMSFRESHDQLYLAVNAFLQVHTN-ISQEEKGSICSYLNCQKLSQEASLELV 450

Query: 145 QNPLMPLRFVVRAMLIEQLNTRHSI------FSTTTVAAAATKPLP---PRPVPKDPLT- 204
           +N  MPLR VV+A+ I+QLNT  +       F  T  A  +   +P   P    + P T 
Sbjct: 451 KNEKMPLRLVVQALFIQQLNTHQAFKDCSDSFRFTNSADFSGSVVPSSRPLTSQQSPCTD 510

Query: 205 ---------LGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSL 264
                    L  ++++DA   E         +T+ RI  LE QL S+KK L   +  +  
Sbjct: 511 DETGPRNRPLCFLMQKDATLDE-------FESTSFRIHNLEEQLVSLKKSLHSHDNLKKP 570

Query: 265 SQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSAD 292
           +             G   +S + N    V     GS SF+  R  A+
Sbjct: 571 N-----------CLGKRSASRNKNTFGQVTTACIGSVSFTSQRKYAN 598

HSP 2 Score: 32.0 bits (71), Expect = 1.8e+01
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 12  NLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEA 60
           NL +  + Y  +VV  N D   VV + C +L+P +E +  + SRC+E+
Sbjct: 128 NLCERFDLYLNQVVLQNWDDTLVVLKKCQDLVPWSEDLLIV-SRCIES 174

[Close]

BLAST of Cucsa.103190 vs. TrEMBL
Match: A0A0A0KLI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495650 PE=4 SV=1)

HSP 1 Score: 771.2 bits (1990), Expect = 6.2e-220
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW
Sbjct: 157 MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 216

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED
Sbjct: 217 SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 276

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK
Sbjct: 277 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 336

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
           PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK
Sbjct: 337 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 396

Query: 241 QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG 300
           QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG
Sbjct: 397 QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG 456

Query: 301 GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG 360
           GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG
Sbjct: 457 GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG 516

Query: 361 EDLFEEEGDDDGDDDIVVMRRNQLYVN 388
           EDLFEEEGDDDGDDDIVVMRRNQLYVN
Sbjct: 517 EDLFEEEGDDDGDDDIVVMRRNQLYVN 543

[Close]

BLAST of Cucsa.103190 vs. TrEMBL
Match: A0A061DIK4_THECC (DNA-directed RNA polymerase II subunit RPB1 isoform 3 OS=Theobroma cacao GN=TCM_000793 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 2.4e-75
Identity = 178/364 (48.90%), Postives = 229/364 (62.91%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           M++T+ +  D+NL  +TE YFRR VAVN +YA++VFRSCL LLPEAET A+L SRC+E  
Sbjct: 69  MTETKGD-GDQNLKQITEGYFRRFVAVNGEYAAIVFRSCLALLPEAETTAFLVSRCVEVM 128

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           +  ++GD  D+  F+D   +  E+F ++A S+++RF+ HDL+Y I   YL+   GKITE+
Sbjct: 129 NSSEDGDGVDVY-FDDVVSLHAEDFKIVAESMHQRFEYHDLLYRIVDFYLEEHNGKITEE 188

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QK  ICN IDC+KLSP LLLHAVQNP MPLRFVVRAML+EQLNTR SIFS    AA    
Sbjct: 189 QKTQICNSIDCNKLSPQLLLHAVQNPRMPLRFVVRAMLVEQLNTRRSIFS----AANHYS 248

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
             P RP  +D +TLGAIL+RDA  RE+A+LKAAM AT+SRI+TLE QL  MKK LQDS+ 
Sbjct: 249 SRPHRPA-RDNITLGAILQRDATMRETAQLKAAMDATSSRIQTLEKQLHCMKKILQDSDH 308

Query: 241 QRSL---SQDA-GRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDY 300
              +   S+D  G GRSASFHYG        N  +   RG   S SF  SR         
Sbjct: 309 NGGVGAGSRDVLGSGRSASFHYG------SGNTIERADRGASSSASFRFSR--------- 368

Query: 301 FKFGGGCKPSSDRGSSSNHEGARKSGR-SSSFGQRLMNGIKNVFRV---SSLGETESKVQ 357
                        GSSS+      S R   + GQRL+ G+K+  RV   S+   +  K+ 
Sbjct: 369 -------PEDKAFGSSSSENSCVDSPRIKKNIGQRLIEGLKSALRVPNSSTKNGSAKKIS 403

[Close]

BLAST of Cucsa.103190 vs. TrEMBL
Match: A0A061DH06_THECC (DNA-directed RNA polymerase II subunit RPB1 isoform 1 OS=Theobroma cacao GN=TCM_000793 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 2.4e-75
Identity = 178/364 (48.90%), Postives = 229/364 (62.91%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           M++T+ +  D+NL  +TE YFRR VAVN +YA++VFRSCL LLPEAET A+L SRC+E  
Sbjct: 133 MTETKGD-GDQNLKQITEGYFRRFVAVNGEYAAIVFRSCLALLPEAETTAFLVSRCVEVM 192

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           +  ++GD  D+  F+D   +  E+F ++A S+++RF+ HDL+Y I   YL+   GKITE+
Sbjct: 193 NSSEDGDGVDVY-FDDVVSLHAEDFKIVAESMHQRFEYHDLLYRIVDFYLEEHNGKITEE 252

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QK  ICN IDC+KLSP LLLHAVQNP MPLRFVVRAML+EQLNTR SIFS    AA    
Sbjct: 253 QKTQICNSIDCNKLSPQLLLHAVQNPRMPLRFVVRAMLVEQLNTRRSIFS----AANHYS 312

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
             P RP  +D +TLGAIL+RDA  RE+A+LKAAM AT+SRI+TLE QL  MKK LQDS+ 
Sbjct: 313 SRPHRPA-RDNITLGAILQRDATMRETAQLKAAMDATSSRIQTLEKQLHCMKKILQDSDH 372

Query: 241 QRSL---SQDA-GRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDY 300
              +   S+D  G GRSASFHYG        N  +   RG   S SF  SR         
Sbjct: 373 NGGVGAGSRDVLGSGRSASFHYG------SGNTIERADRGASSSASFRFSR--------- 432

Query: 301 FKFGGGCKPSSDRGSSSNHEGARKSGR-SSSFGQRLMNGIKNVFRV---SSLGETESKVQ 357
                        GSSS+      S R   + GQRL+ G+K+  RV   S+   +  K+ 
Sbjct: 433 -------PEDKAFGSSSSENSCVDSPRIKKNIGQRLIEGLKSALRVPNSSTKNGSAKKIS 467

[Close]

BLAST of Cucsa.103190 vs. TrEMBL
Match: A0A067GJN4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0114431mg PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.3e-68
Identity = 166/355 (46.76%), Postives = 219/355 (61.69%), Query Frame = 1


Query: 6   NNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDE 65
           N   DENL  +TE +FRR+V VN++YA +VFRS L LLPEAET A+L SRC+EA SL DE
Sbjct: 68  NCDGDENLEQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALSLTDE 127

Query: 66  GDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYL-KGRGGKITEDQKVL 125
           G  G +  FE+   +  E+F ++A S+N+RF  HD++Y I  LYL K   G++TE+QKV 
Sbjct: 128 G-YGVVELFEEVVRLGAEDFKLVAESMNQRFTSHDVLYEIVDLYLQKNSSGEMTEEQKVE 187

Query: 126 ICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPP 185
           IC+ IDC+KLS   LLH VQNP MPLRF++RAML EQL+TR SIFST             
Sbjct: 188 ICDSIDCNKLSSGFLLHIVQNPRMPLRFMIRAMLAEQLHTRSSIFSTGK-TNNNNNHHHH 247

Query: 186 RPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRS- 245
               +DP+TLGAIL+RD A RE+ +LKAAM AT+ RI++LE++L  MKK+L+++EK+RS 
Sbjct: 248 HNASEDPVTLGAILQRDEALREAVQLKAAMGATSLRIQSLENELDGMKKRLKETEKERSD 307

Query: 246 ----------------LSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSR 305
                           LS     G+SASFHYGD+       N K+V  G+RGS S    R
Sbjct: 308 LSDLNNRLLHERGRSILSSSTSAGKSASFHYGDD-------NKKIVG-GERGSVSSLNVR 367

Query: 306 MSADFKTDYFKFGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVS 343
                       G G        +S NH+  +K     + G+RL+NG+K+ FRVS
Sbjct: 368 DGG---------GRGRLLLLGTEASRNHDKMKK-----NIGRRLINGLKSAFRVS 398

[Close]

BLAST of Cucsa.103190 vs. TrEMBL
Match: V4SKI9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025483mg PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 6.4e-68
Identity = 166/355 (46.76%), Postives = 218/355 (61.41%), Query Frame = 1


Query: 6   NNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDE 65
           N   DENL  +TE +FRR+V VN++YA +VFRS L LLPEAET A+L SRC+EA SL DE
Sbjct: 132 NCDGDENLKQLTETFFRRIVTVNKEYALIVFRSSLALLPEAETTAFLVSRCIEALSLTDE 191

Query: 66  GDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYL-KGRGGKITEDQKVL 125
           G  G +  FE+   +  E+F ++A S+N+RF  HD++Y I  LYL K   G++TE+QKV 
Sbjct: 192 G-YGVVELFEEVVRLGAEDFKLVAESMNQRFTSHDVLYEIVDLYLQKNSSGEMTEEQKVE 251

Query: 126 ICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPP 185
           IC+ IDC+KLS   LLH VQNP MPLRF++RAML EQL+TR SIFST             
Sbjct: 252 ICDSIDCNKLSSGFLLHIVQNPRMPLRFMIRAMLAEQLHTRSSIFSTGK-TNNNNNHHHH 311

Query: 186 RPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRS- 245
               +DP+TLGAIL+RD A RE+ +LKAAM AT+ RI++LE++L  MKK+L+++EK+RS 
Sbjct: 312 HNASEDPVTLGAILQRDEALREAVQLKAAMGATSLRIQSLENELDGMKKRLKETEKERSD 371

Query: 246 ----------------LSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSR 305
                           LS     G+SASFHYGD        N K+V  G+RGS S    R
Sbjct: 372 LSDLNNRLLHEKGRSILSSSTSAGKSASFHYGDVP------NKKIVG-GERGSVSSLNVR 431

Query: 306 MSADFKTDYFKFGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVS 343
                       G G        +S NH+  +K     + G+RL+NG+K+ FRVS
Sbjct: 432 DVG---------GRGRLLLLGTEASRNHDKMKK-----NIGRRLINGLKSAFRVS 463

[Close]

BLAST of Cucsa.103190 vs. TAIR10
Match: AT3G49900.2 (AT3G49900.2 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 225.3 bits (573), Expect = 6.4e-59
Identity = 162/390 (41.54%), Postives = 223/390 (57.18%), Query Frame = 1


Query: 11  ENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDEGDNGD 70
           ++L ++TE Y RRVV VN DY  +V RSCL LLPE+ET A+L  RC+EA  L + GD   
Sbjct: 156 DSLRNLTESYLRRVVFVNVDYIQIVLRSCLLLLPESETTAFLIGRCVEA--LMEIGDGDC 215

Query: 71  ITCF-EDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGR---GGKITEDQKVLIC 130
           +  F E+   +   +F V+A ++ +RF  HDL+Y I   Y+K +    G++TE++KV IC
Sbjct: 216 VNEFLEEAVKLPAGDFNVVADAVQQRFPRHDLLYRIVDAYVKVKREHDGEMTEEEKVQIC 275

Query: 131 NFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPR- 190
           N IDCDKLSP LLLHAVQNP MPLRF+VRAML EQLNTRHSI     VAA+   P   R 
Sbjct: 276 NSIDCDKLSPPLLLHAVQNPKMPLRFIVRAMLQEQLNTRHSIM-VAAVAASCAAPTGVRH 335

Query: 191 -----PVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKL-QDSE 250
                      +TLG++L+RD AAR++ +L+AAM++T+SRI +LE +L +MK+ L ++SE
Sbjct: 336 REIATEARDSSVTLGSLLQRDTAARQNCRLRAAMNSTSSRIESLEKELDTMKRFLSKESE 395

Query: 251 KQ---RSLSQDAGR-----GRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSAD 310
           KQ   R++ +   R      RSASFH   + S     N     RG RG    SVS +S  
Sbjct: 396 KQKSDRNIVESRSRSVMDSARSASFHCVHQPS-----NVNKTQRGDRG----SVSNLSTT 455

Query: 311 FKTDYFKFGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKV 370
           ++               R +S      +K     S G+RL+ GIKN F       T SK 
Sbjct: 456 YRR--------------RRASPPQAQPQK-----SIGKRLIMGIKNAF------STSSKQ 508

Query: 371 QNRGDEEEGEDLFEEEGD-----DDGDDDI 377
             + +    E++++   D     DD DD+I
Sbjct: 516 VPKKNAYAVEEIYDGLEDFVWIKDDNDDNI 508

[Close]

BLAST of Cucsa.103190 vs. TAIR10
Match: AT5G66560.1 (AT5G66560.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-13
Identity = 60/220 (27.27%), Postives = 98/220 (44.55%), Query Frame = 1


Query: 83  ENFMVLASSLNRRFKCHDL-IYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLH 142
           + F  LA SL  + + +D  +Y    +YLK     ++E ++  IC  +DC KL+     H
Sbjct: 450 DKFYNLAISLPDQARLYDDGLYRAVDVYLKAHPW-VSEAEREKICGVMDCQKLTLEACTH 509

Query: 143 AVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPRPVPKDPLTLGAILKRD 202
           A QN  +PLR VV+ +  EQL  RH+I  T   A + +      P P   +    I + D
Sbjct: 510 AAQNERLPLRAVVQVLFFEQLQLRHAIAGTLLAAQSPSTSQSTEPRPSAAIRNLTITEED 569

Query: 203 A----------------AARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRS-- 262
                              RE+  L+  M    +R+  LE + S+MKK +   +K+ S  
Sbjct: 570 GDEAEGERQVDAGKWKKTVRENQVLRLDMDTMRTRVHRLERECSNMKKVIAKIDKEGSSP 629

Query: 263 -LSQDAGRGRSASFHYGDEKSS--CDNNNSKVVARGQRGS 281
             + D  R  S +  +G +  +  CD++ + +V    R S
Sbjct: 630 ATTTDRPRSWSITKKFGCKFKTQVCDSHEATMVDHRSRRS 668

[Close]

BLAST of Cucsa.103190 vs. TAIR10
Match: AT3G50840.1 (AT3G50840.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 65.5 bits (158), Expect = 8.4e-11
Identity = 59/217 (27.19%), Postives = 94/217 (43.32%), Query Frame = 1


Query: 65  EGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITEDQKVL 124
           +G  G+I    + K     N  VL     R +   D +Y    +Y K     I E++K  
Sbjct: 364 DGVLGEIASDANLKPEQFYNLAVLLPVQARVYD--DGLYRAVDIYFKTHSW-ILEEEKEK 423

Query: 125 ICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPP 184
           IC+ +DC KL+     HA QN  +PLR VV+ + +EQL  R  I  T        K    
Sbjct: 424 ICSVMDCRKLTVEGCTHAAQNERLPLRAVVQVLFLEQLQLRQVITGTLLTEEDGDK---- 483

Query: 185 RPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSL 244
                   T+  + +   A +E+  L+  M    +R+  LE +   +KK +   +K+  L
Sbjct: 484 --------TVVDLGRWKEAVKENQVLRLDMDTMRTRVNQLEKECLYLKKVIAKIDKESLL 543

Query: 245 SQDAGRGR-SASFHYGDEKSS--CDNNNSKVVARGQR 279
               G G+ S    +G + S+  CD+  + +V R  R
Sbjct: 544 KAKHGAGKWSIGKKFGCKFSAQVCDSQEATMVDRRSR 565

[Close]

BLAST of Cucsa.103190 vs. TAIR10
Match: AT5G48130.1 (AT5G48130.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-10
Identity = 62/227 (27.31%), Postives = 99/227 (43.61%), Query Frame = 1


Query: 85  FMVLASSLNRRFK-CHDLIYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLHAV 144
           F+ L  ++   F+  HD +Y     +L+     I++++K  IC++++C KLS    L  V
Sbjct: 391 FIELIETVPMSFRESHDQLYLAVNAFLQVHTN-ISQEEKGSICSYLNCQKLSQEASLELV 450

Query: 145 QNPLMPLRFVVRAMLIEQLNTRHSI------FSTTTVAAAATKPLP---PRPVPKDPLT- 204
           +N  MPLR VV+A+ I+QLNT  +       F  T  A  +   +P   P    + P T 
Sbjct: 451 KNEKMPLRLVVQALFIQQLNTHQAFKDCSDSFRFTNSADFSGSVVPSSRPLTSQQSPCTD 510

Query: 205 ---------LGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSL 264
                    L  ++++DA   E         +T+ RI  LE QL S+KK L   +  +  
Sbjct: 511 DETGPRNRPLCFLMQKDATLDE-------FESTSFRIHNLEEQLVSLKKSLHSHDNLKKP 570

Query: 265 SQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSAD 292
           +             G   +S + N    V     GS SF+  R  A+
Sbjct: 571 N-----------CLGKRSASRNKNTFGQVTTACIGSVSFTSQRKYAN 598

HSP 2 Score: 32.0 bits (71), Expect = 1.0e+00
Identity = 17/48 (35.42%), Postives = 28/48 (58.33%), Query Frame = 1


Query: 12  NLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEA 60
           NL +  + Y  +VV  N D   VV + C +L+P +E +  + SRC+E+
Sbjct: 128 NLCERFDLYLNQVVLQNWDDTLVVLKKCQDLVPWSEDLLIV-SRCIES 174

[Close]

BLAST of Cucsa.103190 vs. TAIR10
Match: AT2G14820.1 (AT2G14820.1 Phototropic-responsive NPH3 family protein)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-10
Identity = 45/154 (29.22%), Postives = 73/154 (47.40%), Query Frame = 1


Query: 99  HDLIYNIALLYLKGRGGKITEDQKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAML 158
           HD +Y    ++LK   G IT+ +K  +C  +DC KLS    +HAVQN  +PLR VV+ + 
Sbjct: 425 HDALYRAIDMFLKEHPG-ITKGEKKRMCKLMDCRKLSVEACMHAVQNDRLPLRVVVQVLF 484

Query: 159 IEQLNTRHSIFSTTTVAAAATKPLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMH--- 218
            EQ+    S  S+T               P  P  +G  L+       S  +   M    
Sbjct: 485 FEQVRAAASSGSST---------------PDLPRGMGRELRSCGTYGSSRSVPTVMEDEW 544

Query: 219 ---ATNSRIRTLESQLSSMKKKLQDSEKQRSLSQ 247
              AT   +R L+S+++++  KLQ+   ++S+ +
Sbjct: 545 EAVATEEEMRALKSEIAAL--KLQEESGRKSMDR 560

[Close]

BLAST of Cucsa.103190 vs. NCBI nr
Match: gi|778718671|ref|XP_011657900.1| (PREDICTED: BTB/POZ domain-containing protein At3g49900 [Cucumis sativus])

HSP 1 Score: 771.2 bits (1990), Expect = 8.8e-220
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW
Sbjct: 157 MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 216

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED
Sbjct: 217 SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 276

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK
Sbjct: 277 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 336

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
           PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK
Sbjct: 337 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 396

Query: 241 QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG 300
           QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG
Sbjct: 397 QRSLSQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFG 456

Query: 301 GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG 360
           GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG
Sbjct: 457 GGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEEEG 516

Query: 361 EDLFEEEGDDDGDDDIVVMRRNQLYVN 388
           EDLFEEEGDDDGDDDIVVMRRNQLYVN
Sbjct: 517 EDLFEEEGDDDGDDDIVVMRRNQLYVN 543

[Close]

BLAST of Cucsa.103190 vs. NCBI nr
Match: gi|659079691|ref|XP_008440391.1| (PREDICTED: BTB/POZ domain-containing protein At3g49900 [Cucumis melo])

HSP 1 Score: 708.0 bits (1826), Expect = 9.2e-201
Identity = 361/389 (92.80%), Postives = 374/389 (96.14%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           MSDTENNT +ENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW
Sbjct: 143 MSDTENNTKEENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 202

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           SLEDEGDNGDITCFEDFKCV+VENFMVLASSLNRRFKCHDLIYN+ALLYLKG GGKITED
Sbjct: 203 SLEDEGDNGDITCFEDFKCVEVENFMVLASSLNRRFKCHDLIYNVALLYLKGHGGKITED 262

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTT-TVAAAAT 180
           QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTR+SIFSTT T AA+AT
Sbjct: 263 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRNSIFSTTNTPAASAT 322

Query: 181 KPLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSE 240
           K LPPRPVPKDPLTLGAILKRDAAARESAKLKAAM+ATNSRIRTLESQLSSMKKKLQDSE
Sbjct: 323 KSLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMNATNSRIRTLESQLSSMKKKLQDSE 382

Query: 241 KQRSLSQDAGRGRSASFHYGDEKSSC-DNNNSKVVARGQRGSTSFSVSRMSADFKTDYFK 300
           KQRSLSQDAGRGRSASFHYGDEKSSC +NNNSKVVARGQRGS S SV RMSADFK +YF 
Sbjct: 383 KQRSLSQDAGRGRSASFHYGDEKSSCSNNNNSKVVARGQRGSISSSVYRMSADFKAEYFN 442

Query: 301 FGGGCKPSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQNRGDEE 360
           FGGGCKPSSDRGSSSNH GA KSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQ+R DEE
Sbjct: 443 FGGGCKPSSDRGSSSNHGGAGKSGRSSSFGQRLMNGIKNVFRVSSLGETESKVQSRDDEE 502

Query: 361 EGEDLFEEEGDDDGDDDIVVMRRNQLYVN 388
           EG+DLFE+E ++DGDDDIVVMRRNQLYVN
Sbjct: 503 EGKDLFEKEEEEDGDDDIVVMRRNQLYVN 531

[Close]

BLAST of Cucsa.103190 vs. NCBI nr
Match: gi|590705732|ref|XP_007047522.1| (DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma cacao])

HSP 1 Score: 290.8 bits (743), Expect = 3.5e-75
Identity = 178/364 (48.90%), Postives = 229/364 (62.91%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           M++T+ +  D+NL  +TE YFRR VAVN +YA++VFRSCL LLPEAET A+L SRC+E  
Sbjct: 133 MTETKGD-GDQNLKQITEGYFRRFVAVNGEYAAIVFRSCLALLPEAETTAFLVSRCVEVM 192

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           +  ++GD  D+  F+D   +  E+F ++A S+++RF+ HDL+Y I   YL+   GKITE+
Sbjct: 193 NSSEDGDGVDVY-FDDVVSLHAEDFKIVAESMHQRFEYHDLLYRIVDFYLEEHNGKITEE 252

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QK  ICN IDC+KLSP LLLHAVQNP MPLRFVVRAML+EQLNTR SIFS    AA    
Sbjct: 253 QKTQICNSIDCNKLSPQLLLHAVQNPRMPLRFVVRAMLVEQLNTRRSIFS----AANHYS 312

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
             P RP  +D +TLGAIL+RDA  RE+A+LKAAM AT+SRI+TLE QL  MKK LQDS+ 
Sbjct: 313 SRPHRPA-RDNITLGAILQRDATMRETAQLKAAMDATSSRIQTLEKQLHCMKKILQDSDH 372

Query: 241 QRSL---SQDA-GRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDY 300
              +   S+D  G GRSASFHYG        N  +   RG   S SF  SR         
Sbjct: 373 NGGVGAGSRDVLGSGRSASFHYG------SGNTIERADRGASSSASFRFSR--------- 432

Query: 301 FKFGGGCKPSSDRGSSSNHEGARKSGR-SSSFGQRLMNGIKNVFRV---SSLGETESKVQ 357
                        GSSS+      S R   + GQRL+ G+K+  RV   S+   +  K+ 
Sbjct: 433 -------PEDKAFGSSSSENSCVDSPRIKKNIGQRLIEGLKSALRVPNSSTKNGSAKKIS 467

[Close]

BLAST of Cucsa.103190 vs. NCBI nr
Match: gi|590705739|ref|XP_007047524.1| (DNA-directed RNA polymerase II subunit RPB1 isoform 3 [Theobroma cacao])

HSP 1 Score: 290.8 bits (743), Expect = 3.5e-75
Identity = 178/364 (48.90%), Postives = 229/364 (62.91%), Query Frame = 1


Query: 1   MSDTENNTNDENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAW 60
           M++T+ +  D+NL  +TE YFRR VAVN +YA++VFRSCL LLPEAET A+L SRC+E  
Sbjct: 69  MTETKGD-GDQNLKQITEGYFRRFVAVNGEYAAIVFRSCLALLPEAETTAFLVSRCVEVM 128

Query: 61  SLEDEGDNGDITCFEDFKCVDVENFMVLASSLNRRFKCHDLIYNIALLYLKGRGGKITED 120
           +  ++GD  D+  F+D   +  E+F ++A S+++RF+ HDL+Y I   YL+   GKITE+
Sbjct: 129 NSSEDGDGVDVY-FDDVVSLHAEDFKIVAESMHQRFEYHDLLYRIVDFYLEEHNGKITEE 188

Query: 121 QKVLICNFIDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATK 180
           QK  ICN IDC+KLSP LLLHAVQNP MPLRFVVRAML+EQLNTR SIFS    AA    
Sbjct: 189 QKTQICNSIDCNKLSPQLLLHAVQNPRMPLRFVVRAMLVEQLNTRRSIFS----AANHYS 248

Query: 181 PLPPRPVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEK 240
             P RP  +D +TLGAIL+RDA  RE+A+LKAAM AT+SRI+TLE QL  MKK LQDS+ 
Sbjct: 249 SRPHRPA-RDNITLGAILQRDATMRETAQLKAAMDATSSRIQTLEKQLHCMKKILQDSDH 308

Query: 241 QRSL---SQDA-GRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDY 300
              +   S+D  G GRSASFHYG        N  +   RG   S SF  SR         
Sbjct: 309 NGGVGAGSRDVLGSGRSASFHYG------SGNTIERADRGASSSASFRFSR--------- 368

Query: 301 FKFGGGCKPSSDRGSSSNHEGARKSGR-SSSFGQRLMNGIKNVFRV---SSLGETESKVQ 357
                        GSSS+      S R   + GQRL+ G+K+  RV   S+   +  K+ 
Sbjct: 369 -------PEDKAFGSSSSENSCVDSPRIKKNIGQRLIEGLKSALRVPNSSTKNGSAKKIS 403

[Close]

BLAST of Cucsa.103190 vs. NCBI nr
Match: gi|848893254|ref|XP_012846678.1| (PREDICTED: BTB/POZ domain-containing protein At3g49900 isoform X1 [Erythranthe guttata])

HSP 1 Score: 281.2 bits (718), Expect = 2.8e-72
Identity = 174/382 (45.55%), Postives = 235/382 (61.52%), Query Frame = 1


Query: 10  DENLVDVTEKYFRRVVAVNRDYASVVFRSCLELLPEAETMAYLGSRCLEAWSLEDEGDNG 69
           +ENL   TE YFR+ + VN++YA +V RSC  LLPEAET A L SRC+EA +L  E D G
Sbjct: 152 EENLQQKTEAYFRQAIYVNKEYACIVLRSCFPLLPEAETAAALVSRCVEALALTAESD-G 211

Query: 70  DITCFEDFKCVDVENFMVLASSLNRRF-KCHDLIYNIALLYLKGRGGKITEDQKVLICNF 129
           D++C E FK V  ++  V+  S+++R   CHDL+Y I  +YLK     ++ED+K+ +CN 
Sbjct: 212 DMSCLEGFKSVAFDDLQVILESVSQRLTDCHDLLYRIIDIYLKENIETVSEDEKIQMCNH 271

Query: 130 IDCDKLSPNLLLHAVQNPLMPLRFVVRAMLIEQLNTRHSIFSTTTVAAAATKPLPPR--- 189
           IDC  L+P LL+HAVQNP MPLRFVV+AM ++QLNTRHSI S  T +     P P R   
Sbjct: 272 IDCSILTPRLLMHAVQNPKMPLRFVVQAMFLQQLNTRHSIISAATSSPDHHHPHPRRIHQ 331

Query: 190 -PVPKDPLTLGAILKRDAAARESAKLKAAMHATNSRIRTLESQLSSMKKKLQDSEKQRSL 249
               KDP+TLGAIL+RDAA R+ ++LK+ M ATNSRI+TLE +L  M++ L +SE   S+
Sbjct: 332 EHSKKDPVTLGAILERDAALRQVSQLKSIMTATNSRIQTLEKELHGMRQLLNESE---SV 391

Query: 250 SQDAGRGRSASFHYGDEKSSCDNNNSKVVARGQRGSTSFSVSRMSADFKTDYFKFGGGCK 309
              AG GRSASF +  E +S    N   + RGQ GS S S  R  A+         G   
Sbjct: 392 KNRAGSGRSASFRFSSEPTS---RNYNKIERGQMGSISASSFRSLAE--------RGRRT 451

Query: 310 PSSDRGSSSNHEGARKSGRSSSFGQRLMNGIKNVFRVSSLG-ETESKVQNRGDEEEGEDL 369
             S     S  +G+  SG   SFGQRLM+G+K+ FR+      +ESKV  +     GE+L
Sbjct: 452 EISSSSEESYSDGS--SGGEKSFGQRLMSGLKSAFRLQKKKCSSESKVPVK---INGENL 509

Query: 370 FEEEGDDDGDDDIVVMRRNQLY 386
            E    D   D+IV+++++Q +
Sbjct: 512 RE----DGNKDNIVIIKKDQAF 509

The following BLAST results are available for this feature:

BLAST of Cucsa.103190 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3990_ARATH	3.5e-59	41.86	BTB/POZ domain-containing protein At3g49900 OS=Arabidopsis thaliana GN=At3g49900...	[more]
Y5656_ARATH	9.4e-12	27.27	BTB/POZ domain-containing protein At5g66560 OS=Arabidopsis thaliana GN=At5g66560...	[more]
NPH3_ORYSJ	3.9e-10	27.59	Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 S...	[more]
Y3084_ARATH	1.5e-09	27.19	BTB/POZ domain-containing protein At3g50840 OS=Arabidopsis thaliana GN=At3g50840...	[more]
Y5813_ARATH	4.4e-09	27.31	BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana GN=At5g48130...	[more]

BLAST of Cucsa.103190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLI6_CUCSA	6.2e-220	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495650 PE=4 SV=1	[more]
A0A061DIK4_THECC	2.4e-75	48.90	DNA-directed RNA polymerase II subunit RPB1 isoform 3 OS=Theobroma cacao GN=TCM_...	[more]
A0A061DH06_THECC	2.4e-75	48.90	DNA-directed RNA polymerase II subunit RPB1 isoform 1 OS=Theobroma cacao GN=TCM_...	[more]
A0A067GJN4_CITSI	1.3e-68	46.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0114431mg PE=4 ...	[more]
V4SKI9_9ROSI	6.4e-68	46.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025483mg PE=4 SV=1	[more]

BLAST of Cucsa.103190 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49900.2	6.4e-59	41.54	Phototropic-responsive NPH3 family protein	[more]
AT5G66560.1	5.3e-13	27.27	Phototropic-responsive NPH3 family protein	[more]
AT3G50840.1	8.4e-11	27.19	Phototropic-responsive NPH3 family protein	[more]
AT5G48130.1	2.5e-10	27.31	Phototropic-responsive NPH3 family protein	[more]
AT2G14820.1	5.5e-10	29.22	Phototropic-responsive NPH3 family protein	[more]

BLAST of Cucsa.103190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778718671\|ref\|XP_011657900.1\|	8.8e-220	100.00	PREDICTED: BTB/POZ domain-containing protein At3g49900 [Cucumis sativus]	[more]
gi\|659079691\|ref\|XP_008440391.1\|	9.2e-201	92.80	PREDICTED: BTB/POZ domain-containing protein At3g49900 [Cucumis melo]	[more]
gi\|590705732\|ref\|XP_007047522.1\|	3.5e-75	48.90	DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma cacao]	[more]
gi\|590705739\|ref\|XP_007047524.1\|	3.5e-75	48.90	DNA-directed RNA polymerase II subunit RPB1 isoform 3 [Theobroma cacao]	[more]
gi\|848893254\|ref\|XP_012846678.1\|	2.8e-72	45.55	PREDICTED: BTB/POZ domain-containing protein At3g49900 isoform X1 [Erythranthe g...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027356	NPH3_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.103190.1	Cucsa.103190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027356	NPH3 domain	PFAM	PF03000	NPH3	coord: 81..136 score: 1.
IPR027356	NPH3 domain	PROFILE	PS51649	NPH3	coord: 1..163 score: 15
None	No IPR available	unknown	Coil	Coil	coord: 214..241 scor
None	No IPR available	PANTHER	PTHR32370	FAMILY NOT NAMED	coord: 274..346 score: 2.4E-70coord: 4..244 score: 2.4
None	No IPR available	PANTHER	PTHR32370:SF20	SUBFAMILY NOT NAMED	coord: 274..346 score: 2.4E-70coord: 4..244 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.103190	Cla014028	Watermelon (97103) v1	cgywmB136
Cucsa.103190	Csa6G495650	Cucumber (Chinese Long) v2	cgycuB121
Cucsa.103190	MELO3C007633	Melon (DHL92) v3.5.1	cgymeB131
Cucsa.103190	ClCG01G017570	Watermelon (Charleston Gray)	cgywcgB134
Cucsa.103190	CSPI06G28900	Wild cucumber (PI 183967)	cgycpiB122
Cucsa.103190	CmaCh03G009160	Cucurbita maxima (Rimu)	cgycmaB0231
Cucsa.103190	CmoCh03G009540	Cucurbita moschata (Rifu)	cgycmoB0227
Cucsa.103190	Lsi01G008950	Bottle gourd (USVL1VR-Ls)	cgylsiB125
Cucsa.103190	Cp4.1LG10g02100	Cucurbita pepo (Zucchini)	cgycpeB0211
Cucsa.103190	MELO3C032967.2	Melon (DHL92) v3.6.1	cgymedB131
Cucsa.103190	CsaV3_6G044110	Cucumber (Chinese Long) v3	cgycucB126
Cucsa.103190	Cla97C01G016740	Watermelon (97103) v2	cgywmbB127
Cucsa.103190	Bhi03G000792	Wax gourd	cgywgoB151
Cucsa.103190	Carg00790	Silver-seed gourd	carcgyB0467

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.103190	Cucurbita pepo (Zucchini)	cgycpeB0215
Cucsa.103190	Cucurbita pepo (Zucchini)	cgycpeB0218
Cucsa.103190	Cucurbita pepo (Zucchini)	cgycpeB0220
Cucsa.103190	Cucurbita pepo (Zucchini)	cgycpeB0227
Cucsa.103190	Bottle gourd (USVL1VR-Ls)	cgylsiB128
Cucsa.103190	Bottle gourd (USVL1VR-Ls)	cgylsiB129
Cucsa.103190	Melon (DHL92) v3.6.1	cgymedB125
Cucsa.103190	Melon (DHL92) v3.6.1	cgymedB130
Cucsa.103190	Silver-seed gourd	carcgyB0001
Cucsa.103190	Silver-seed gourd	carcgyB0376
Cucsa.103190	Silver-seed gourd	carcgyB0433
Cucsa.103190	Silver-seed gourd	carcgyB0523
Cucsa.103190	Silver-seed gourd	carcgyB0870
Cucsa.103190	Cucumber (Chinese Long) v3	cgycucB117
Cucsa.103190	Cucumber (Chinese Long) v3	cgycucB124
Cucsa.103190	Watermelon (97103) v2	cgywmbB133
Cucsa.103190	Wax gourd	cgywgoB146
Cucsa.103190	Cucumber (Gy14) v1	cgycgyB048
Cucsa.103190	Cucumber (Gy14) v1	cgycgyB052
Cucsa.103190	Cucurbita maxima (Rimu)	cgycmaB0226
Cucsa.103190	Cucurbita maxima (Rimu)	cgycmaB0220
Cucsa.103190	Cucurbita maxima (Rimu)	cgycmaB0224
Cucsa.103190	Cucurbita maxima (Rimu)	cgycmaB0232
Cucsa.103190	Cucurbita maxima (Rimu)	cgycmaB0235
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0214
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0215
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0219
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0221
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0228
Cucsa.103190	Cucurbita moschata (Rifu)	cgycmoB0233
Cucsa.103190	Wild cucumber (PI 183967)	cgycpiB115
Cucsa.103190	Wild cucumber (PI 183967)	cgycpiB121
Cucsa.103190	Cucumber (Chinese Long) v2	cgycuB113
Cucsa.103190	Cucumber (Chinese Long) v2	cgycuB120
Cucsa.103190	Melon (DHL92) v3.5.1	cgymeB126
Cucsa.103190	Melon (DHL92) v3.5.1	cgymeB130
Cucsa.103190	Watermelon (Charleston Gray)	cgywcgB137
Cucsa.103190	Watermelon (Charleston Gray)	cgywcgB138
Cucsa.103190	Watermelon (97103) v1	cgywmB132