Cucsa.102070 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.102070
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionB3 domain-containing protein family
Locationscaffold00927 : 1172271 .. 1172714 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCAAGGATGTTTATAAAAAGCTATGGTAAGTTGTTATCAAGTTCTGTTATTCTGAAGCTTCCTGATGGAAGAGAATGGAAGATTGGCTTGACAACTTCAGATAACGGCGCTGTGTGGTTGGAGAAAGGATGGGATAAATTTTCAGAACATTACTGCTTGGAGTATGGTTTTTTGTTGGTTTTTAAATTGTTGAATAGTAGAGGAACTTCGAGTTTTAAAGTAAACATATTTAACACAACAGCAATGGAAACCGAATATTCTTGGAATGTTAAAGATTTTACAAAAGAATTTGATTCGGATTCTGATGGCTCCGAGAGTTTCTGCCCACATTCGAAGAAGAGGAATAAGGCTTCGGTTCCTCGTCGTCGACTTAGTAAGAAAACAAGAAAGGAAGACCACTTTTCAATCAAAACAGAACCTGAAGAAGGAGGTATCTAA

mRNA sequence

ATGATTCCAAGGATGTTTATAAAAAGCTATGGTAAGTTGTTATCAAGTTCTGTTATTCTGAAGCTTCCTGATGGAAGAGAATGGAAGATTGGCTTGACAACTTCAGATAACGGCGCTGTGTGGTTGGAGAAAGGATGGGATAAATTTTCAGAACATTACTGCTTGGAGTATGGTTTTTTGTTGGTTTTTAAATTGTTGAATAGTAGAGGAACTTCGAGTTTTAAAGTAAACATATTTAACACAACAGCAATGGAAACCGAATATTCTTGGAATGTTAAAGATTTTACAAAAGAATTTGATTCGGATTCTGATGGCTCCGAGAGTTTCTGCCCACATTCGAAGAAGAGGAATAAGGCTTCGGTTCCTCGTCGTCGACTTAGTAAGAAAACAAGAAAGGAAGACCACTTTTCAATCAAAACAGAACCTGAAGAAGGAGGTATCTAA

Coding sequence (CDS)

ATGATTCCAAGGATGTTTATAAAAAGCTATGGTAAGTTGTTATCAAGTTCTGTTATTCTGAAGCTTCCTGATGGAAGAGAATGGAAGATTGGCTTGACAACTTCAGATAACGGCGCTGTGTGGTTGGAGAAAGGATGGGATAAATTTTCAGAACATTACTGCTTGGAGTATGGTTTTTTGTTGGTTTTTAAATTGTTGAATAGTAGAGGAACTTCGAGTTTTAAAGTAAACATATTTAACACAACAGCAATGGAAACCGAATATTCTTGGAATGTTAAAGATTTTACAAAAGAATTTGATTCGGATTCTGATGGCTCCGAGAGTTTCTGCCCACATTCGAAGAAGAGGAATAAGGCTTCGGTTCCTCGTCGTCGACTTAGTAAGAAAACAAGAAAGGAAGACCACTTTTCAATCAAAACAGAACCTGAAGAAGGAGGTATCTAA

Protein sequence

MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLLVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKASVPRRRLSKKTRKEDHFSIKTEPEEGGI*
Homology
[Close]
BLAST of Cucsa.102070 vs. Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           +P  F+  +   LS +V L +PDG  W++GL  +DN  +W + GW +F + Y +  G+LL
Sbjct: 22  VPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADN-KIWFQDGWQEFVDRYSIRIGYLL 81

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEY 89
           +F+     G S+F V IFN +  E  Y
Sbjct: 82  IFRY---EGNSAFSVYIFNLSHSEINY 104

[Close]
BLAST of Cucsa.102070 vs. Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.2e-09
Identity = 45/136 (33.09%), Postives = 64/136 (47.06%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           IP  F+K  G  LS  V L+ P G +  I L       +W  +GW +F+E + +E G  L
Sbjct: 46  IPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGE-EIWFHEGWSEFAEAHSIEEGHFL 105

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSD-----GSESFCPHSKKR 121
           +F+    +  SSF+V IFN +A ET+Y     D     DSD D     G E       ++
Sbjct: 106 LFEY---KENSSFRVIIFNVSACETKYP---LDAVHIIDSDDDIIDITGKEFVGTQGTRK 165

Query: 122 NKASVPRRRLSKKTRK 133
           N  SV       K++K
Sbjct: 166 NNQSVNGGDTEHKSKK 174

[Close]
BLAST of Cucsa.102070 vs. Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.1e-08
Identity = 47/148 (31.76%), Postives = 63/148 (42.57%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           IP  F+K  G  LS  V L  P G +  I L       +W  +GW +F+E + +E G  L
Sbjct: 46  IPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGE-EIWFHEGWSEFAEAHSIEEGHFL 105

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSD-----GSESFCPHSKKR 121
           +F+    +  SSF+V IFN +A ET Y     D     DSD D     G E    H  K+
Sbjct: 106 LFEY---KKNSSFRVIIFNASACETNYP---LDAVHIIDSDDDVIEITGKEFDTEHKSKK 165

Query: 122 NKASVPRRRLSKKTRKEDHFSIKTEPEE 145
               +      K     D   +  E EE
Sbjct: 166 RPRDI---EFDKILHDVDVMQVLKEEEE 183

[Close]
BLAST of Cucsa.102070 vs. Swiss-Prot
Match: Y3221_ORYSJ (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica GN=Os03g0622100 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 44/163 (26.99%), Postives = 70/163 (42.94%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           ++P  F  ++   +S  V LK P G+ W IG+  SD G + L  GW +F +   ++    
Sbjct: 45  IVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDC 104

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKD--FTKE----------FDSDSDGSE- 120
           L+F+     G SSF V IF+ +  E      V++  F +E           D D +G   
Sbjct: 105 LLFRY---SGVSSFDVLIFDPSGCEKASPHFVENRGFGREEKSAGAEGGGRDGDKNGHHQ 164

Query: 121 ---SFCPHSKKRNKASVP---RRRLSKKTRKEDHFSIKTEPEE 145
                 PH       S+P   +R L     ++DH   K E ++
Sbjct: 165 HQLEMTPHKNSSRCRSIPSACKRGLFSDEIEQDHREEKKEGDD 204

[Close]
BLAST of Cucsa.102070 vs. Swiss-Prot
Match: Y3222_ORYSJ (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 29/84 (34.52%), Postives = 45/84 (53.57%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           +P  F  ++   +S  V L+ P G  W IG+  SD G + L+ GW +F +   +E G  L
Sbjct: 46  VPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCL 105

Query: 62  VFKLLNSRGTSSFKVNIFNTTAME 86
           +F+   S  +SSF V IF+ +  E
Sbjct: 106 LFRY--SGVSSSFDVLIFDPSGCE 127

[Close]
BLAST of Cucsa.102070 vs. TrEMBL
Match: A0A0A0KL64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489970 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.0e-79
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL
Sbjct: 22  MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS 120
           LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS
Sbjct: 82  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS 141

Query: 121 VPRRRLSKKTRKEDHFSIKTEPEEG 146
           VPRRRLSKKTRKEDHFSIKTEPEEG
Sbjct: 142 VPRRRLSKKTRKEDHFSIKTEPEEG 166

[Close]
BLAST of Cucsa.102070 vs. TrEMBL
Match: A0A0A0KG44_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489990 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.9e-36
Identity = 82/147 (55.78%), Postives = 105/147 (71.43%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIP+ F++ YGKLLS+SV LKL DG+EW++GL  + NGAVWLE+GWDKFSEHYCLE+G L
Sbjct: 22  MIPKKFVEDYGKLLSNSVNLKLSDGKEWRVGLRRATNGAVWLEEGWDKFSEHYCLEFGLL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGS-ESFCPHS--KKRN 120
           LVFKL + R +S+FKV IF+ T +ET++        +E DSDSD S ES   H   KKR 
Sbjct: 82  LVFKLFDGRRSSNFKVTIFDPTGVETKFISPSPQIKEESDSDSDESLESLTLHGDLKKRK 141

Query: 121 KASVPRRRLSKKTRKEDHFSIKTEPEE 145
             SV   +  +K RK+D F++KTE EE
Sbjct: 142 NVSVSCSQSRRKMRKDDLFTVKTELEE 168

[Close]
BLAST of Cucsa.102070 vs. TrEMBL
Match: A0A0A0KJE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489980 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.2e-34
Identity = 81/154 (52.60%), Postives = 102/154 (66.23%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIP+ F++ YGK LS+ V LKL DG EWK+GL  + NGA+WLEKGWDKFSEHYCLE+G L
Sbjct: 22  MIPKTFVEDYGKALSNWVNLKLSDGLEWKVGLRKATNGALWLEKGWDKFSEHYCLEFGSL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFD---------SDSD-GSESFC 120
           L+F LLN R +S+F+V IF+ T +ET+Y  +     ++ D         SDSD  SESF 
Sbjct: 82  LIFTLLNGRRSSNFEVTIFDPTGVETKYVSSSPQLKEDSDTNADSGYSYSDSDESSESFR 141

Query: 121 PHSKKRNKASVPRRRLSKKTRKEDHFSIKTEPEE 145
            HSKKR  A VP     KK RK+   +IK EP +
Sbjct: 142 EHSKKRKNALVPCWLNRKKMRKDGSSTIKIEPAD 175

[Close]
BLAST of Cucsa.102070 vs. TrEMBL
Match: A0A0A0KFK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489960 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.8e-18
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 1  MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
          MIP+ FI  YGK LS+ + LK PDG EWK+  TT+ NG VWL+ GW +FS HY L+ G L
Sbjct: 1  MIPKKFITDYGKFLSNPICLKTPDGLEWKVESTTTPNGTVWLQNGWQEFSNHYGLKSGSL 60

Query: 61 LVFKLLNSRGTSSFKVNIFNTTAMETEYSWN 92
          LVF+L    G S+F   IFN    E +YS N
Sbjct: 61 LVFRL---DGNSTFHTLIFNQNCSEIQYSSN 88

[Close]
BLAST of Cucsa.102070 vs. TrEMBL
Match: W9SKQ9_9ROSA (B3 domain-containing transcription factor VRN1 OS=Morus notabilis GN=L484_026753 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-17
Identity = 59/152 (38.82%), Postives = 78/152 (51.32%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           IP  F++ YG  LS  V L+LP G  W++ LT S NG VW++KGW  FS++Y L +G LL
Sbjct: 38  IPNKFLRLYGDTLSGKVCLELPCGLRWEVRLTKS-NGKVWMDKGWTDFSKYYSLGHGDLL 97

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSD-------------SDGS-- 121
           VF+     G S F V IF+ +  E +Y  N   F K  D+D              D S  
Sbjct: 98  VFRY---EGNSKFHVLIFDKSTTEIDYPSNPNRFEKHDDTDRKPHEFCVEEGIEDDDSVV 157

Query: 122 ---ESFCPHSKKRNKASVPRRRLSKKTRKEDH 136
              E+F PH K R K+ +P  R  K+ R   H
Sbjct: 158 EVPETFLPHPKTREKSPIPCPRPHKRARTNRH 185

[Close]
BLAST of Cucsa.102070 vs. TAIR10
Match: AT3G18990.1 (AT3G18990.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           +P  F+  +   LS +V L +PDG  W++GL  +DN  +W + GW +F + Y +  G+LL
Sbjct: 22  VPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADN-KIWFQDGWQEFVDRYSIRIGYLL 81

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEY 89
           +F+     G S+F V IFN +  E  Y
Sbjct: 82  IFRY---EGNSAFSVYIFNLSHSEINY 104

[Close]
BLAST of Cucsa.102070 vs. TAIR10
Match: AT3G18960.1 (AT3G18960.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-10
Identity = 45/136 (33.09%), Postives = 64/136 (47.06%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           IP  F+K  G  LS  V L+ P G +  I L       +W  +GW +F+E + +E G  L
Sbjct: 46  IPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGE-EIWFHEGWSEFAEAHSIEEGHFL 105

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSD-----GSESFCPHSKKR 121
           +F+    +  SSF+V IFN +A ET+Y     D     DSD D     G E       ++
Sbjct: 106 LFEY---KENSSFRVIIFNVSACETKYP---LDAVHIIDSDDDIIDITGKEFVGTQGTRK 165

Query: 122 NKASVPRRRLSKKTRK 133
           N  SV       K++K
Sbjct: 166 NNQSVNGGDTEHKSKK 174

[Close]
BLAST of Cucsa.102070 vs. TAIR10
Match: AT4G01580.1 (AT4G01580.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 47/148 (31.76%), Postives = 63/148 (42.57%), Query Frame = 1 

Query: 2   IPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFLL 61
           IP  F+K  G  LS  V L  P G +  I L       +W  +GW +F+E + +E G  L
Sbjct: 46  IPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGE-EIWFHEGWSEFAEAHSIEEGHFL 105

Query: 62  VFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSD-----GSESFCPHSKKR 121
           +F+    +  SSF+V IFN +A ET Y     D     DSD D     G E    H  K+
Sbjct: 106 LFEY---KKNSSFRVIIFNASACETNYP---LDAVHIIDSDDDVIEITGKEFDTEHKSKK 165

Query: 122 NKASVPRRRLSKKTRKEDHFSIKTEPEE 145
               +      K     D   +  E EE
Sbjct: 166 RPRDI---EFDKILHDVDVMQVLKEEEE 183

[Close]
BLAST of Cucsa.102070 vs. NCBI nr
Match: gi|778718250|ref|XP_011657840.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis sativus])

HSP 1 Score: 302.0 bits (772), Expect = 5.8e-79
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL
Sbjct: 22  MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS 120
           LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS
Sbjct: 82  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGSESFCPHSKKRNKAS 141

Query: 121 VPRRRLSKKTRKEDHFSIKTEPEEG 146
           VPRRRLSKKTRKEDHFSIKTEPEEG
Sbjct: 142 VPRRRLSKKTRKEDHFSIKTEPEEG 166

[Close]
BLAST of Cucsa.102070 vs. NCBI nr
Match: gi|659079373|ref|XP_008440223.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIPRMFIK YGK LS+ VIL+LPDGREWK+GLT  DNG+VWL++GWDKFSEHYCLEYGFL
Sbjct: 22  MIPRMFIKDYGKFLSNFVILELPDGREWKVGLTWRDNGSVWLQEGWDKFSEHYCLEYGFL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSD-GSESFCPHSKKRNKA 120
           LVFKLL+ RGTSSFKVNIF+TTAMET+YSWNV DFT+EFDSDSD  SES  PHSKKR K 
Sbjct: 82  LVFKLLDRRGTSSFKVNIFDTTAMETQYSWNVNDFTEEFDSDSDASSESLRPHSKKRKKG 141

Query: 121 SVPRRRLSKKTRKEDHFSIKTEPEE 145
           S+P RR SKKTR+ED F IKTEPEE
Sbjct: 142 SLP-RRFSKKTRQEDFFLIKTEPEE 165

[Close]
BLAST of Cucsa.102070 vs. NCBI nr
Match: gi|659079371|ref|XP_008440222.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 1.0e-38
Identity = 89/169 (52.66%), Postives = 110/169 (65.09%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIP+ F++ YGK+LS+SV LKL DGREWK+GL T+ NGAVWLEKGWDKFSEHYCLE+G L
Sbjct: 74  MIPKKFVEDYGKVLSNSVNLKLSDGREWKVGLRTATNGAVWLEKGWDKFSEHYCLEFGSL 133

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTK--------EFDSDSDG------- 120
           L+F LL+ R +S F V IF+ T +ET+Y  +   F +        + DSDSDG       
Sbjct: 134 LIFTLLDGRRSSDFGVTIFDPTGVETKYFSSSPQFNEDSYSHSDSDSDSDSDGNTNTNSD 193

Query: 121 ----------SESFCPHSKKRNKASVPRRRLSKKTRKEDHFSIKTEPEE 145
                     SESF  HSKKR   SVP  +  +K RK+D F+IKTEP E
Sbjct: 194 INTDSDSDESSESFRGHSKKRKNVSVPCSQSRRKMRKDDSFTIKTEPAE 242

[Close]
BLAST of Cucsa.102070 vs. NCBI nr
Match: gi|778718253|ref|XP_004142019.2| (PREDICTED: B3 domain-containing transcription factor VRN1 [Cucumis sativus])

HSP 1 Score: 160.2 bits (404), Expect = 2.7e-36
Identity = 82/147 (55.78%), Postives = 105/147 (71.43%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIP+ F++ YGKLLS+SV LKL DG+EW++GL  + NGAVWLE+GWDKFSEHYCLE+G L
Sbjct: 22  MIPKKFVEDYGKLLSNSVNLKLSDGKEWRVGLRRATNGAVWLEEGWDKFSEHYCLEFGLL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFDSDSDGS-ESFCPHS--KKRN 120
           LVFKL + R +S+FKV IF+ T +ET++        +E DSDSD S ES   H   KKR 
Sbjct: 82  LVFKLFDGRRSSNFKVTIFDPTGVETKFISPSPQIKEESDSDSDESLESLTLHGDLKKRK 141

Query: 121 KASVPRRRLSKKTRKEDHFSIKTEPEE 145
             SV   +  +K RK+D F++KTE EE
Sbjct: 142 NVSVSCSQSRRKMRKDDLFTVKTELEE 168

[Close]
BLAST of Cucsa.102070 vs. NCBI nr
Match: gi|778718247|ref|XP_011657839.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-34
Identity = 81/154 (52.60%), Postives = 102/154 (66.23%), Query Frame = 1 

Query: 1   MIPRMFIKSYGKLLSSSVILKLPDGREWKIGLTTSDNGAVWLEKGWDKFSEHYCLEYGFL 60
           MIP+ F++ YGK LS+ V LKL DG EWK+GL  + NGA+WLEKGWDKFSEHYCLE+G L
Sbjct: 22  MIPKTFVEDYGKALSNWVNLKLSDGLEWKVGLRKATNGALWLEKGWDKFSEHYCLEFGSL 81

Query: 61  LVFKLLNSRGTSSFKVNIFNTTAMETEYSWNVKDFTKEFD---------SDSD-GSESFC 120
           L+F LLN R +S+F+V IF+ T +ET+Y  +     ++ D         SDSD  SESF 
Sbjct: 82  LIFTLLNGRRSSNFEVTIFDPTGVETKYVSSSPQLKEDSDTNADSGYSYSDSDESSESFR 141

Query: 121 PHSKKRNKASVPRRRLSKKTRKEDHFSIKTEPEE 145
            HSKKR  A VP     KK RK+   +IK EP +
Sbjct: 142 EHSKKRKNALVPCWLNRKKMRKDGSSTIKIEPAD 175

The following BLAST results are available for this feature:
BLAST of Cucsa.102070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VRN1_ARATH2.3e-1136.78B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 P... [more]
Y3896_ARATH8.2e-0933.09B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2... [more]
Y4158_ARATH3.1e-0831.76B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2... [more]
Y3221_ORYSJ2.2e-0626.99B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Y3222_ORYSJ5.0e-0634.52B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica GN=Os0... [more]
BLAST of Cucsa.102070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KL64_CUCSA4.0e-79100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489970 PE=4 SV=1[more]
A0A0A0KG44_CUCSA1.9e-3655.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489990 PE=4 SV=1[more]
A0A0A0KJE0_CUCSA5.2e-3452.60Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489980 PE=4 SV=1[more]
A0A0A0KFK0_CUCSA6.8e-1852.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G489960 PE=4 SV=1[more]
W9SKQ9_9ROSA2.6e-1738.82B3 domain-containing transcription factor VRN1 OS=Morus notabilis GN=L484_026753... [more]
BLAST of Cucsa.102070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18990.11.3e-1236.78 AP2/B3-like transcriptional factor family protein[more]
AT3G18960.14.6e-1033.09 AP2/B3-like transcriptional factor family protein[more]
AT4G01580.11.8e-0931.76 AP2/B3-like transcriptional factor family protein[more]
BLAST of Cucsa.102070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718250|ref|XP_011657840.1|5.8e-79100.00PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis sativus][more]
gi|659079373|ref|XP_008440223.1|1.0e-5980.00PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo][more]
gi|659079371|ref|XP_008440222.1|1.0e-3852.66PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo][more]
gi|778718253|ref|XP_004142019.2|2.7e-3655.78PREDICTED: B3 domain-containing transcription factor VRN1 [Cucumis sativus][more]
gi|778718247|ref|XP_011657839.1|7.4e-3452.60PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucum... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.102070.1Cucsa.102070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 1..80
score: 7.2
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 1..82
score: 0
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 1..82
score: 14
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 2..81
score: 1.0
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 1..81
score: 1.96
NoneNo IPR availablePANTHERPTHR31920FAMILY NOT NAMEDcoord: 111..133
score: 2.0E-24coord: 1..88
score: 2.0
NoneNo IPR availablePANTHERPTHR31920:SF16SUBFAMILY NOT NAMEDcoord: 1..88
score: 2.0E-24coord: 111..133
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.102070Cla010278Watermelon (97103) v1cgywmB131
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.102070Cucumber (Chinese Long) v3cgycucB119
Cucsa.102070Cucumber (Chinese Long) v3cgycucB126
Cucsa.102070Watermelon (97103) v2cgywmbB127
Cucsa.102070Watermelon (97103) v2cgywmbB130
Cucsa.102070Watermelon (97103) v2cgywmbB134
Cucsa.102070Watermelon (97103) v2cgywmbB136
Cucsa.102070Wax gourdcgywgoB147
Cucsa.102070Wax gourdcgywgoB149
Cucsa.102070Wax gourdcgywgoB155
Cucsa.102070Cucumber (Gy14) v1cgycgyB042
Cucsa.102070Cucumber (Gy14) v1cgycgyB045
Cucsa.102070Cucumber (Gy14) v1cgycgyB050
Cucsa.102070Cucumber (Gy14) v1cgycgyB051
Cucsa.102070Cucurbita maxima (Rimu)cgycmaB0230
Cucsa.102070Cucurbita maxima (Rimu)cgycmaB0231
Cucsa.102070Cucurbita maxima (Rimu)cgycmaB0234
Cucsa.102070Cucurbita maxima (Rimu)cgycmaB0235
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0213
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0217
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0226
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0227
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0232
Cucsa.102070Cucurbita moschata (Rifu)cgycmoB0233
Cucsa.102070Wild cucumber (PI 183967)cgycpiB118
Cucsa.102070Wild cucumber (PI 183967)cgycpiB119
Cucsa.102070Wild cucumber (PI 183967)cgycpiB122
Cucsa.102070Cucumber (Chinese Long) v2cgycuB116
Cucsa.102070Cucumber (Chinese Long) v2cgycuB118
Cucsa.102070Cucumber (Chinese Long) v2cgycuB121
Cucsa.102070Melon (DHL92) v3.5.1cgymeB128
Cucsa.102070Melon (DHL92) v3.5.1cgymeB131
Cucsa.102070Watermelon (Charleston Gray)cgywcgB132
Cucsa.102070Watermelon (Charleston Gray)cgywcgB134
Cucsa.102070Watermelon (Charleston Gray)cgywcgB139
Cucsa.102070Watermelon (97103) v1cgywmB133
Cucsa.102070Watermelon (97103) v1cgywmB136
Cucsa.102070Cucurbita pepo (Zucchini)cgycpeB0211
Cucsa.102070Cucurbita pepo (Zucchini)cgycpeB0214
Cucsa.102070Cucurbita pepo (Zucchini)cgycpeB0220
Cucsa.102070Cucurbita pepo (Zucchini)cgycpeB0226
Cucsa.102070Bottle gourd (USVL1VR-Ls)cgylsiB123
Cucsa.102070Bottle gourd (USVL1VR-Ls)cgylsiB125
Cucsa.102070Bottle gourd (USVL1VR-Ls)cgylsiB126
Cucsa.102070Bottle gourd (USVL1VR-Ls)cgylsiB130
Cucsa.102070Melon (DHL92) v3.6.1cgymedB123
Cucsa.102070Melon (DHL92) v3.6.1cgymedB127
Cucsa.102070Melon (DHL92) v3.6.1cgymedB131
Cucsa.102070Silver-seed gourdcarcgyB0219
Cucsa.102070Silver-seed gourdcarcgyB0467
Cucsa.102070Silver-seed gourdcarcgyB0871
Cucsa.102070Silver-seed gourdcarcgyB0918
Cucsa.102070Silver-seed gourdcarcgyB1011