Cucsa.101050 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.101050
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L17
Location	scaffold00927 : 313674 .. 317678 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGGGTTTTTCCATCTTCGAGCTCAGTCTTTGCTCTCTTTTCGCCATTAAGGATGACGAAGTTTAGGAAGCTTGGTCGACCTGCTGCACACCGGATGTCCATGCTCAGGTTCCTCATTTCTTACACCAACTATCCATTACGTTTTATTTCCCAATTTCTGAACGTCTTTTCTCTTCTTTTCGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGTATTCCTATCCCTCATTTCAACCCCCCCAATGACTTTCTGCTTATCATTCTGAGATCCCCATCTTCTACCTAACTGAATATGCCTTTTCCAAGTGATGAAATTTATCTGTATCCGAAATTTCCACTTTCAACTTTCCCTGTTTGGTTCATATTGTATCTTGGTTTATTCTGTGATCTTTGGATTTTTCATTAATCAATGAAATGGCTTCTATCCTAAAAAAAAAGAAAGAAAAAAATTGAAATTTTCCCTGTATCACAATGGTTACTATTTTTTTTTAAAGGTAAGGTAATTTGTGGGTTTGTTACATTGTTCATGCGATATGTCTGGAGGCTTGATGTTTTGTATTGTCTAAATTGAGCTTACATTTTGATTTTTTTCCCCTATGATCCGAATTTAGAGTTTTGGTTAGTTAGATATATGTATGTTATCTCTTTTCCCTTGGTTTGCATCTTTTCTGTTCTTTCAAAATTTAACACCTAGCTTATTGTTGAAGGATATGTAGCATTCCTTGAGATCAAATAGATATTTTGGATTTCTAACATCTAAACTATTATGAATTTATGAGTTATGGCCATATTTTGAGCTTATTAATGCCATTTTCTTCCAACTTGTTTGAAGGCTAAAGAAGTTCGGCGACTTGCTGATAACATGGTTCAACTGGGAAAAGAGGTCCGTAGAAGTGTAACCAATTTGTTTTTCCTCTCAGTTTGTTGCTTTTGATTCTTTTTCTTCTTTTGGGGAGGGTGGGTTCTGCCTTCAAAATTTGATATTAGTTGGATACTAAGAATCACAGATCATTCAGTTTGGTTAACGTGCTTGACCGATACATATTAGACTCTCTGACACTTGTTAGACATGTATTAGAGGATTGGTAATGGTCGATATGTGTCAACATTAGTTGTACAAAGTTGATATTAATTCTTTGTTAAACATGTATTGAACACTTGTTAATTTAGCATACTTAATAGACACACAGTAAAATAGGACAAAAATTAATAAATTTTAAGTGTGAAATATATCAAACTTATTTTTAAGCATATAGGTCCACAAATTTATTGACTTTGAATTTTCAAGCTGGCAGAGACACTCGTAAAAAAGTGACATAAAAGGGAGTACATTTTAAATATGCGCGTACTTATCGTGTCTGTGTCCTAAGATTGTAAAATGTGGTGTATTTATGTGTGAGTTTCATGATGCCATACATTCTCATATGCATGTCCTATATCCATGCTTCTCAGGTGAGGTATTAAATTTGTAGATAAAGGACTAATTTGTAAATGAAAAGTAAACATGGTTCAAGATTTAGCTGATCTAAAATTAGTAACATGTAAAACTTTGCGGGAGAGAAGAAAGACAGGGCACGGAGATTAAGTTTGCATTAAATAATGCAGGAAGCTAATGATGGCATTGGGCACGGTCTTGATAAATATGCTTGCGGGTTTTGAGGGAAATAGGAGTGGCCTGCAACCAACATTGGAAGCTAAGCCAAATAAGAAATGAGGCGTGCATAATTAATAGGGTTTCTGGTATCCTGACCACTGAAATTCTGGCCAGGATGACGCCTTTATTTCAAATGTTTCTTAAGTCAGTATAAGTAATCCTCAAAAGATGGATACCAGAAATCAGCAATGGCACATCAATATGAGAAAGAAAGATCTTCAGAAGGAAGATTAGTTGGAACCATTTGAAAGTGAAAGAAGAGTGGTTTGAGGATCGCTGGATGTTATCGGGATTAAAGAGGAGTTTTAATTTCAGTGACACCCAATAATGTTTGAATTAAAATAATGGCTCTTCACCTAGGGGAATATAGTAGGTTTCGCTTCTGCTTACTCCTTTTTGCACTGAGGACATATTGTCATTTACTTCAAACTAGACATACTGGGATAGAAGGAAAACAATGAAATCAACCCACTAATAGAGTTGGTGTGATAGTTTAAACTCTATTACACCATAGACCGCGTGCAAAGATATTCTTACTATGTTTTGTTTCTGCAATGGGGCACTCTCAGAGGCACGAGAAGATCTGGTTCATCTGTTTTGGGAGTGCCAGTTTGCTCACCACCTTTGGAGTTGCTGTCTGCGAGCTTTTGGAGCTTGTTAGATTTAAATAAAGATGGTGGGGACCCGAATTTAGAAGGTGACTATGGTTCATAGGAGTTTTAGAGAGGTGGAGAGATTGGGCGGCAGTGTTTGGGAAGTAACTAATTTTGACTCCTCTTTGTGGGCGTTCGTCACCAAGTGTTTTTTAATGGTTCATGTTCTTTTGAACTGAAATCCTTGTAGTTTTTTTTTCTTGTTTTTTGTTGCCTTGTATATACTTTATATTTCTCCGTCAAAGCATGGTTTCTTATTAAGAAAAATAGGAACCTTTGCTTTGCTATTTTCTTTTTGATTCATAAAAGATAATATGCATGTTGTGACTTATTTTTTTTGTTTTCAATCTAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGGTTTTGTAAGAGGAGATGCTGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAATCCCAAATCTACTAACCTCTATTTTATACTTTTATTTATTTATTATTAAATTGGATATATATCATGTTTAACAGAGATAGAACTGGTGGATATACAAGATTTCTGCGCACTCGTATACGTGTTGGTGATGCTGCACCAATGGCTTATATTGAGTAAGTGCTCATGATCGACAGCTGGGATAATTCTCCAGTGAACTGTAAAATATGAGTAATAGCTGATGTTTTTCTCTCATATTCAGTTATAAACAATTCTTGCTGTTGCAATTTTTAATTGATTATTTATGCTGTGGATACAGATTTTTAGTAGTAGGGAGGGAAATAAAGTCTAAAACACTAACATATTTGATGGCCTGCTCTCCATGAAAGTTGAATCAATTATATTAATTCGTTATTTCTCTATACTATTGACACAGATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCCGACTCCGAAATCTAATACTTCATGTTTAACAATAAGGCTCCCCCCCAAGAAGTTCATCCCGCCACCACCCCCTCCAATTTGTTTTCCAAACTTCAGATGTAAACCAAACAAGTATAGACAATGCTTAAAGCTTTACCTCAAACAAAGAGTGTTTTTCAGCTCTCAAAGTTTACCATTTCTTGAAAATTCCATATACTGTTTCATCTATACAACATGACATCGGACCTTAAACTGACAAAGGCCGAGTCTCTCTCAAGTAGAATCTCAACTTATTCAAAAAATATATTATGTTTTAGGTAACTTTGGTTGAATATAGGTGAGGAAGAATGGTGATGGTGGATTGTGTATCTGTTGGAGTTGCAAATTTGGATCTTGCCCGTCTTGTCGACAGCCAGCAATTGCTTTGCAGCAGCAGCAAAATTTGGAGATAGGCTTCAAATATCCTGAACCAAGTATGAAACAGACTCCCTCCGAAATTTTCTATTACTATCATAGTACTTACTATTATCAGACACGTCATTAAGCAATAAGTTCATCTTTTTCATGATACTATAGTACTAAGAATTTTCTCCACCCAATCCATGTCTCCACGTGCATGCATTTTATGTCCATGTGTCAAATAGGTAGCCTGAAACTCACCTTGATTGCTTTGGAGGCAAGGAAAATTAGTGATTG

mRNA sequence

TCAGGGTTTTTCCATCTTCGAGCTCAGTCTTTGCTCTCTTTTCGCCATTAAGGATGACGAAGTTTAGGAAGCTTGGTCGACCTGCTGCACACCGGATGTCCATGCTCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGACTTGCTGATAACATGGTTCAACTGGGAAAAGAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGGTTTTGTAAGAGGAGATGCTGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCCGACTCCGAAATCTAATACTTCATGTTTAACAATAAGGCTCCCCCCCAAGAAGTTCATCCCGCCACCACCCCCTCCAATTTGTTTTCCAAACTTCAGATGTAAACCAAACAAGTATAGACAATGCTTAAAGCTTTACCTCAAACAAAGAGTGTTTTTCAGCTCTCAAAGTTTACCATTTCTTGAAAATTCCATATACTGTTTCATCTATACAACATGACATCGGACCTTAAACTGACAAAGGCCGAGTCTCTCTCAAGTAGAATCTCAACTTATTCAAAAAATATATTATGTTTTAGGTAACTTTGGTTGAATATAGGTGAGGAAGAATGGTGATGGTGGATTGTGTATCTGTTGGAGTTGCAAATTTGGATCTTGCCCGTCTTGTCGACAGCCAGCAATTGCTTTGCAGCAGCAGCAAAATTTGGAGATAGGCTTCAAATATCCTGAACCAAGTATGAAACAGACTCCCTCCGAAATTTTCTATTACTATCATAGTACTTACTATTATCAGACACGTCATTAAGCAATAAGTTCATCTTTTTCATGATACTATAGTACTAAGAATTTTCTCCACCCAATCCATGTCTCCACGTGCATGCATTTTATGTCCATGTGTCAAATAGGTAGCCTGAAACTCACCTTGATTGCTTTGGAGGCAAGGAAAATTAGTGATTG

Coding sequence (CDS)

ATGACGAAGTTTAGGAAGCTTGGTCGACCTGCTGCACACCGGATGTCCATGCTCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGACTTGCTGATAACATGGTTCAACTGGGAAAAGAGGGTACCCTTTCTGCTGCAAGGCGTGCTGCTGGTTTTGTAAGAGGAGATGCTGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAATTTATTGATAGAGAAAATGAGCTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGCCTCCATTGGATCCATGGACTAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCCGACTCCGAAATCTAA

Protein sequence

MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAAGFVRGDAVLHKLFTELAYRYKFIDRENELRQSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI*

Homology

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BLAST of Cucsa.101050 vs. Swiss-Prot
Match: RL17_GEOSL (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rplQ PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 1


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+ L  HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKP 124
            ++R   V+ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE ++ + E +  K 
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 125 PNPPPPQRPPLDPWTRSRLSKQFAPPKE 153
               P Q     P          A P+E
Sbjct: 128 KPTAPAQAVATKPAVEETREAAAAQPQE 155

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BLAST of Cucsa.101050 vs. Swiss-Prot
Match: RL17_MAGMM (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.3e-28
Identity = 61/113 (53.98%), Postives = 83/113 (73.45%), Query Frame = 1


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+L R  +HR +M++ M+  L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  GFVRGD-AVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRE 117
             + GD  V+HKLFT+LA R KDR GGYTR L+TR R GD APM++IE ++R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

[Close]

BLAST of Cucsa.101050 vs. Swiss-Prot
Match: RL17_GEOSM (50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.5e-27
Identity = 59/126 (46.83%), Postives = 88/126 (69.84%), Query Frame = 1


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+  ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAA 67

Query: 65  GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQ--S 124
            ++R   V+ KLFTE+A RY +R GGYTR ++  IR GD AP++ +E ++ E + ++  +
Sbjct: 68  AYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLELVEAEMKPKKAAA 127

Query: 125 KPPNPP 129
           KP   P
Sbjct: 128 KPAKAP 133

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BLAST of Cucsa.101050 vs. Swiss-Prot
Match: RL17_GEOMG (50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-26
Identity = 57/119 (47.90%), Postives = 84/119 (70.59%), Query Frame = 1


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           R+LGR  +HR++M R MV+  ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAA 67

Query: 65  GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSK 124
            ++R   V+ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE ++ +   ++ K
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQVNKKEKK 126

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BLAST of Cucsa.101050 vs. Swiss-Prot
Match: RL17_RHORT (50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-26
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 1


Query: 5   RKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAA 64
           RKL R ++HR +M   M + L+KHE+I+TT+ KAK++R +A+ ++ LGK GTL   R+A 
Sbjct: 8   RKLNRTSSHRKAMFANMAASLLKHEQIKTTLPKAKDLRPIAEKLITLGKGGTLHDRRQAH 67

Query: 65  GFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRE 117
             +R DAV+ KLF  L  RYKDR GGY+R L+   R GDAAPMA IE +DR+
Sbjct: 68  AILRDDAVVAKLFAVLGPRYKDRQGGYSRILKAGFRYGDAAPMAVIELVDRD 119

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BLAST of Cucsa.101050 vs. TrEMBL
Match: A0A0A0KFP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483480 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

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BLAST of Cucsa.101050 vs. TrEMBL
Match: A0A151T5E2_CAJCA (50S ribosomal protein L17 OS=Cajanus cajan GN=KK1_016796 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.5e-74
Identity = 142/159 (89.31%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRP AHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+  AA
Sbjct: 1   MTKFRKLGRPTAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPP P PPQR PLDPWTRSRLS+QFAPPKE KS S++
Sbjct: 121 QSKPPTPQPPQRAPLDPWTRSRLSRQFAPPKEEKSGSDL 159

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BLAST of Cucsa.101050 vs. TrEMBL
Match: D7M271_ARALL (Ribosomal protein L17 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908925 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 7.2e-74
Identity = 144/160 (90.00%), Postives = 148/160 (92.50%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNMVQLGKEGTL+AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMVQLGKEGTLAAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGD VLHK+FTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PPQR PLDPW RSRL+KQFAPPKE K SDSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTKQFAPPKEEKSSDSEL 160

[Close]

BLAST of Cucsa.101050 vs. TrEMBL
Match: A0A166G9G3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001358 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 9.4e-74
Identity = 144/160 (90.00%), Postives = 146/160 (91.25%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKL RP  HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTL AA
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLCAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRA  FVRGD V+HKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKPP P PPQR PLDPWTRSRLSKQFAPPKE K SDS+I
Sbjct: 121 QSKPPTPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 160

[Close]

BLAST of Cucsa.101050 vs. TrEMBL
Match: A0A061DKA8_THECC (Ribosomal protein L17 family protein OS=Theobroma cacao GN=TCM_001428 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.6e-73
Identity = 142/160 (88.75%), Postives = 148/160 (92.50%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKL RP  HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+LSAA
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGDAV+HKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDAVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKPP P PPQR PLDPWT+SRLS+QFAPPKE K S+ EI
Sbjct: 121 QSKPPTPQPPQRAPLDPWTKSRLSRQFAPPKEEKNSEPEI 160

[Close]

BLAST of Cucsa.101050 vs. TAIR10
Match: AT5G09770.1 (AT5G09770.1 Ribosomal protein L17 family protein)

HSP 1 Score: 278.9 bits (712), Expect = 2.0e-75
Identity = 140/160 (87.50%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+QLGKEG+LSAA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGD VLHK+FTELA+RYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PPQR PLDPW RSRL++QFAPPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Cucsa.101050 vs. TAIR10
Match: AT5G64650.1 (AT5G64650.1 Ribosomal protein L17 family protein)

HSP 1 Score: 273.9 bits (699), Expect = 6.4e-74
Identity = 136/160 (85.00%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+QLGKEG+L+AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGD VLHK+FTELA+RYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PP R PLDPW RSRL++Q+APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Cucsa.101050 vs. TAIR10
Match: AT3G54210.1 (AT3G54210.1 Ribosomal protein L17 family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 6   KLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAARRAAG 65
           KL RP   R ++LR + +QL+KH RI+TT A+A  +R+  D M+ L K+G+L   R+A G
Sbjct: 104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query: 66  FVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFI 114
           ++    ++H LF E+  RY +R GGYTR +RT  R GD APMAYIE +
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of Cucsa.101050 vs. NCBI nr
Match: gi|449461833|ref|XP_004148646.1| (PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Cucsa.101050 vs. NCBI nr
Match: gi|659080881|ref|XP_008441029.1| (PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 4.6e-82
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGDA+LHKLFTELAYRYKDR GGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQRPPLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of Cucsa.101050 vs. NCBI nr
Match: gi|1012351080|gb|KYP62269.1| (50S ribosomal protein L17 [Cajanus cajan])

HSP 1 Score: 286.2 bits (731), Expect = 3.6e-74
Identity = 142/159 (89.31%), Postives = 147/159 (92.45%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRP AHRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQLGKEG+  AA
Sbjct: 1   MTKFRKLGRPTAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSQCAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGD VLHKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPP P PPQR PLDPWTRSRLS+QFAPPKE KS S++
Sbjct: 121 QSKPPTPQPPQRAPLDPWTRSRLSRQFAPPKEEKSGSDL 159

[Close]

BLAST of Cucsa.101050 vs. NCBI nr
Match: gi|697124634|ref|XP_009616322.1| (PREDICTED: 50S ribosomal protein L17, chloroplastic-like [Nicotiana tomentosiformis])

HSP 1 Score: 285.0 bits (728), Expect = 7.9e-74
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKL RP  HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEG+LSAA
Sbjct: 1   MTKFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLSAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           R+AA FVRGD V+HKLFTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RQAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKPPNP PPQRP +DPWTRSRLS+QFAPPKE K SDS+I
Sbjct: 121 QSKPPNPQPPQRPAMDPWTRSRLSRQFAPPKEEKSSDSDI 160

[Close]

BLAST of Cucsa.101050 vs. NCBI nr
Match: gi|297811075|ref|XP_002873421.1| (ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 284.6 bits (727), Expect = 1.0e-73
Identity = 144/160 (90.00%), Postives = 148/160 (92.50%), Query Frame = 1


Query: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60
           MTKFRKLGRPA HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNMVQLGKEGTL+AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMVQLGKEGTLAAA 60

Query: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAGFVRGD VLHK+FTELAYRYKDR GGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PPQR PLDPW RSRL+KQFAPPKE K SDSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTKQFAPPKEEKSSDSEL 160

The following BLAST results are available for this feature:

BLAST of Cucsa.101050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL17_GEOSL	1.7e-28	43.92	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]
RL17_MAGMM	2.3e-28	53.98	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL17_GEOSM	9.5e-27	46.83	50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1	[more]
RL17_GEOMG	1.2e-26	47.90	50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 5377...	[more]
RL17_RHORT	3.6e-26	51.79	50S ribosomal protein L17 OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1....	[more]

BLAST of Cucsa.101050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP7_CUCSA	2.0e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483480 PE=3 SV=1	[more]
A0A151T5E2_CAJCA	2.5e-74	89.31	50S ribosomal protein L17 OS=Cajanus cajan GN=KK1_016796 PE=3 SV=1	[more]
D7M271_ARALL	7.2e-74	90.00	Ribosomal protein L17 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARAL...	[more]
A0A166G9G3_DAUCA	9.4e-74	90.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001358 PE=4 SV=1	[more]
A0A061DKA8_THECC	1.6e-73	88.75	Ribosomal protein L17 family protein OS=Theobroma cacao GN=TCM_001428 PE=3 SV=1	[more]

BLAST of Cucsa.101050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09770.1	2.0e-75	87.50	Ribosomal protein L17 family protein	[more]
AT5G64650.1	6.4e-74	85.00	Ribosomal protein L17 family protein	[more]
AT3G54210.1	1.8e-23	47.22	Ribosomal protein L17 family protein	[more]

BLAST of Cucsa.101050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449461833\|ref\|XP_004148646.1\|	2.9e-84	100.00	PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Cucumis sativus]	[more]
gi\|659080881\|ref\|XP_008441029.1\|	4.6e-82	96.86	PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Cucumis melo]	[more]
gi\|1012351080\|gb\|KYP62269.1\|	3.6e-74	89.31	50S ribosomal protein L17 [Cajanus cajan]	[more]
gi\|697124634\|ref\|XP_009616322.1\|	7.9e-74	89.38	PREDICTED: 50S ribosomal protein L17, chloroplastic-like [Nicotiana tomentosifor...	[more]
gi\|297811075\|ref\|XP_002873421.1\|	1.0e-73	90.00	ribosomal protein L17 family protein [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000456	Ribosomal_L17
IPR000456	Ribosomal_L17

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.101050.2	Cucsa.101050.2	mRNA
Cucsa.101050.1	Cucsa.101050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	GENE3D	G3DSA:3.90.1030.10		coord: 2..85 score: 2.3
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 1..126 score: 2.9
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 17..85 score: 4.8
IPR000456	Ribosomal protein L17	TIGRFAMs	TIGR00059	TIGR00059	coord: 4..85 score: 1.0
IPR000456	Ribosomal protein L17	unknown	SSF64263	Prokaryotic ribosomal protein L17	coord: 3..85 score: 1.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.101050	Cla008445	Watermelon (97103) v1	cgywmB137
Cucsa.101050	Csa6G483480	Cucumber (Chinese Long) v2	cgycuB121
Cucsa.101050	MELO3C008044	Melon (DHL92) v3.5.1	cgymeB132
Cucsa.101050	ClCG01G015530	Watermelon (Charleston Gray)	cgywcgB134
Cucsa.101050	CSPI06G26590	Wild cucumber (PI 183967)	cgycpiB122
Cucsa.101050	CmaCh03G010870	Cucurbita maxima (Rimu)	cgycmaB0231
Cucsa.101050	CmoCh03G010730	Cucurbita moschata (Rifu)	cgycmoB0227
Cucsa.101050	Lsi01G011400	Bottle gourd (USVL1VR-Ls)	cgylsiB125
Cucsa.101050	MELO3C008044.2	Melon (DHL92) v3.6.1	cgymedB132
Cucsa.101050	CsaV3_6G041770	Cucumber (Chinese Long) v3	cgycucB126
Cucsa.101050	Cla97C01G014480	Watermelon (97103) v2	cgywmbB127
Cucsa.101050	Bhi03G001056	Wax gourd	cgywgoB153
Cucsa.101050	Carg10544	Silver-seed gourd	carcgyB0280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.101050	Cucurbita maxima (Rimu)	cgycmaB0229
Cucsa.101050	Cucurbita maxima (Rimu)	cgycmaB0235
Cucsa.101050	Cucurbita moschata (Rifu)	cgycmoB0225
Cucsa.101050	Cucurbita moschata (Rifu)	cgycmoB0233
Cucsa.101050	Cucurbita pepo (Zucchini)	cgycpeB0211
Cucsa.101050	Cucurbita pepo (Zucchini)	cgycpeB0220
Cucsa.101050	Cucurbita pepo (Zucchini)	cgycpeB0224
Cucsa.101050	Silver-seed gourd	carcgyB0918