Cucsa.100970 (gene) Cucumber (Gy14) v1

NameCucsa.100970
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionATP-dependent zinc metalloprotease FTSH
Locationscaffold00927 : 255133 .. 257130 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAAAGGCAAAACAAAACCAAAAGAAGTACAAAAAAaTACAAATACAAATAAAAGACTATAGGAGACATCCATCAACTCGCGCTGAGACAAACTTGAGTTTTGCATGAATACTCTCCTCAGATTGTGACGTTGGGCTGATGCAATTTTGACTTTTGTTATTCAATAATTTCACTTGTCAATGTTCAGATATTCAATGTCTTCAAACTATTTAAGGGTATTTTTGGTTGCACCTTATCAGCCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGGTACATGACAGTCTATAATGCTCAGATTTACTCCATCCATAATGTTGAATTACTGATAAATGGATCTTTCCTCTGTGAATTGAACCCTTGTGCAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGAATGTAATAATAAATTCCTTCATCTGTTAGCTCTCTCATTCATTGTTATTGATTCATGCACTCGCCTTTTATTTTTCTTGTTAACTGAAAACAGATATTGCATTGAATTATTGATAATGAGAAGTATAGACAATACAAGTATGTAGGACCAGGGAACCTCAAAAGACAGAAACTGAAACTAAACTTTGTTCTCGTAGGTTAAGAAGTCATGGCAAACTCATACATTACATTTTTTGACCAATCAAAAGCATAGAAAAAAAAAaCTGAACTCTATCCATTAACAACTTGTCATTCTTCATGTTTTCTCAAAACATATGCTTGTTTGTCTGAGTTTTATGACCTAATTAAGGGTGGTACTGCTAACATTAGTCCTTGACTTGCAACATTACGATAAATATCCCTACAAAATAGTGAGTGTAAATCTTCTGGAACTACCCGGAAAACATATAACTGAAATACTAACTGAGTCCACCATTGAAACATTGATTTAGCCCTTGTGAACCTTATCCTGTTATTGTTTTCTTGCATTTTCTGTTACACTTCATATCTGTTGTAACTCTCAAATTTTAAATGGAGGAAATAGCTTTCAATCATTTGATTGGGAGGAAGAATGAAAGAAAAaCAAAAAAAAATCTTATTTCTAACAAGAACTTTGCATTGACACCCCACCCAATAAAAAGATTCTTGCCCTGAAGAAATTGGTCTGCCTTTTACGTCTCTATCTCTCATTCCTCTTCATGTTTGTATCATAGGATCTATACAAGGGTTTCAAACTTTATTATCGCGTCATCTTTTTCATTCAGGGTTTATATTGCACACTCTTAACAACTCTTCCCTTACACTTTTCCTTTGATGCTTTCCACTTCCATGCGGGAAAGCAATTGTGATGGTTTTTGTTTACATAGTCTTGCAGATCATAGTGGGATCCTTAATATTTGCCGTAAATGCATGCCAGATTCCTGAAGGTCTGGAAATTTGCATCCTTGCTGATTATGTTTTACGCAGATGAGGAGGGCTTTGAAAAATGGCACATTTTAGATTTATACTTGCTGGAGACTTCGTGGCAATAAAGATGATACAATGATTTTGTTTTAGGCCGTGAGAAGTTAGTGAAGTTAAGTGGCTTCTGCAATTTTAACTGAATCTCTGGAATTGCTTTTCGGCCTGAGTTACCATCAACGAGAAGGGGTATTTGTTTGTATTAGTCCTTGTAAATTGTATCGTTTGTTCATCGGCTCTTCTGAATTTGTATTTCGTTCACAAAGTTTTGCACACACCACATCTTATTAATCAATGAGAAATGTCCTTTTCCTTTCATTGGAAGAACTGGAAAATTGGGCAAATAAATAATGTAAAAAGAATTCATTAGTGCA

mRNA sequence

atgtccaaaggcaaaacaaaaccaaaagaaCCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGAATATCATAGTGGGATCCTTAATATTTGCCGTAAATGCATGCCAGATTCCTGAAGGTCTGGAAATTTGCATCCTTGCTGATTATGTTTTACGCAGATGAGGAGGGCTTTGAAAAATGGCACATTTTAGATTTATACTTGCTGGAGACTTCGTGGCAATAAAGATGATACAATGATTTTGTTTTAGGCCGTGAGAAGTTAGTGAAGTTAAGTGGCTTCTGCAATTTTAACTGAATCTCTGGAATTGCTTTTCGGCCTGAGTTACCATCAACGAGAAGGGGTATTTGTTTGTATTAGTCCTTGTAAATTGTATCGTTTGTTCATCGGCTCTTCTGAATTTGTATTTCGTTCACAAAGTTTTGCACACACCACATCTTATTAATCAATGAGAAATGTCCTTTTCCTTTCATTGGAAGAACTGGAAAATTGGGCAAATAAATAATGTAAAAAGAATTCATTAGTGCA

Coding sequence (CDS)

ATGTCCAAAGGCAAAACAAAACCAAAAGAACCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGA

Protein sequence

MSKGKTKPKEPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKLIDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL*
BLAST of Cucsa.100970 vs. Swiss-Prot
Match: FTSI4_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana GN=FTSHI4 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-38
Identity = 66/97 (68.04%), Postives = 91/97 (93.81%), Query Frame = 1

Query: 8   PKEPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETW 67
           P++P VRP+DE+GAL+YAGRWG++GV+LPGRVTF+PGN GFATFGAPRPMETQ+++D+TW
Sbjct: 759 PQKP-VRPVDEYGALIYAGRWGIHGVSLPGRVTFSPGNIGFATFGAPRPMETQIISDDTW 818

Query: 68  KLIDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHF 105
           KL+D+IWDK+V+E++ E   ++EE+K+KPQ+LMA+HF
Sbjct: 819 KLVDEIWDKKVEEIKAEAVIQIEEEKKKPQILMATHF 854

BLAST of Cucsa.100970 vs. TrEMBL
Match: A0A0A0KHR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483400 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 6.9e-49
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +PSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL
Sbjct: 637 QPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 696

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL
Sbjct: 697 IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 732

BLAST of Cucsa.100970 vs. TrEMBL
Match: U5GB60_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06110g PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 9.1e-41
Identity = 76/96 (79.17%), Postives = 91/96 (94.79%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +P+V P+DE+GAL+YAGRWG++G+TLPGRVTFAPGN GFATFGAPRPMETQVV+DETWKL
Sbjct: 641 QPAVNPVDEYGALIYAGRWGIHGITLPGRVTFAPGNVGFATFGAPRPMETQVVSDETWKL 700

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           +D IWD+RVQE+R+E S E+EEDKE+PQLLMASHFL
Sbjct: 701 MDGIWDQRVQEIRSEASMEIEEDKERPQLLMASHFL 736

BLAST of Cucsa.100970 vs. TrEMBL
Match: U7DW38_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0231s002501g PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 76/95 (80.00%), Postives = 90/95 (94.74%), Query Frame = 1

Query: 11  PSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKLI 70
           P+V P+DE+GAL+YAGRWG++G+TLPGRVTFAPGN GFATFGAPRPMETQVV+DETWKL+
Sbjct: 1   PAVNPVDEYGALIYAGRWGIHGITLPGRVTFAPGNVGFATFGAPRPMETQVVSDETWKLM 60

Query: 71  DDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           D IWD+RVQE+R+E S E+EEDKE+PQLLMASHFL
Sbjct: 61  DGIWDQRVQEIRSEASMEIEEDKERPQLLMASHFL 95

BLAST of Cucsa.100970 vs. TrEMBL
Match: W9S040_9ROSA (ATP-dependent zinc metalloprotease FTSH OS=Morus notabilis GN=L484_020084 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40
Identity = 75/96 (78.12%), Postives = 90/96 (93.75%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +P+V P+DE+GAL+YAGRWG++G++LPGRVTFAPGN GFATFGAPRPMETQ VNDETWKL
Sbjct: 786 QPAVGPVDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFATFGAPRPMETQTVNDETWKL 845

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           IDDIWDKR+QEM+ + S EVEE+KE+PQLL+ASHFL
Sbjct: 846 IDDIWDKRIQEMKAQASAEVEEEKEEPQLLIASHFL 881

BLAST of Cucsa.100970 vs. TrEMBL
Match: A0A0V0IWT6_SOLCH (Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-40
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 1

Query: 3   KGKTKPKEPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVV 62
           K   K  +P+V PIDE+G+L+YAGRWGV+GV+LPGRVTFAPGN GFATFGAPRPMETQ+V
Sbjct: 741 KSSPKSPQPTVSPIDEYGSLIYAGRWGVHGVSLPGRVTFAPGNVGFATFGAPRPMETQIV 800

Query: 63  NDETWKLIDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           +DETWKLID IWDKRV+EM+  VS E EED+EKP+LLMASHFL
Sbjct: 801 SDETWKLIDGIWDKRVEEMKAAVSLETEEDEEKPKLLMASHFL 843

BLAST of Cucsa.100970 vs. TAIR10
Match: AT5G64580.1 (AT5G64580.1 AAA-type ATPase family protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-39
Identity = 66/97 (68.04%), Postives = 91/97 (93.81%), Query Frame = 1

Query: 8   PKEPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETW 67
           P++P VRP+DE+GAL+YAGRWG++GV+LPGRVTF+PGN GFATFGAPRPMETQ+++D+TW
Sbjct: 759 PQKP-VRPVDEYGALIYAGRWGIHGVSLPGRVTFSPGNIGFATFGAPRPMETQIISDDTW 818

Query: 68  KLIDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHF 105
           KL+D+IWDK+V+E++ E   ++EE+K+KPQ+LMA+HF
Sbjct: 819 KLVDEIWDKKVEEIKAEAVIQIEEEKKKPQILMATHF 854

BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|449461843|ref|XP_004148651.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +PSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL
Sbjct: 760 QPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 819

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL
Sbjct: 820 IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 855

BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|700193155|gb|KGN48359.1| (hypothetical protein Csa_6G483400 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +PSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL
Sbjct: 637 QPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 696

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL
Sbjct: 697 IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 732

BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|659080912|ref|XP_008441046.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 7.9e-46
Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +PSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAG+ATFGAPRPMETQVVNDETWKL
Sbjct: 760 QPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGYATFGAPRPMETQVVNDETWKL 819

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           ID+IWDKRVQE+R + SEEVEEDKEKPQLLMASHFL
Sbjct: 820 IDNIWDKRVQEIRAKASEEVEEDKEKPQLLMASHFL 855

BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|1009146833|ref|XP_015891084.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41
Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +P+V  IDE+GAL+YAGRWGV+G+TLPGRVTFAPGN GF TFGAPRPMETQ+VNDETWKL
Sbjct: 314 QPAVNQIDEYGALIYAGRWGVHGITLPGRVTFAPGNVGFLTFGAPRPMETQIVNDETWKL 373

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           ID+IWDKRVQE+R E S EVEEDKEKPQLLMASHFL
Sbjct: 374 IDNIWDKRVQEIRAEASAEVEEDKEKPQLLMASHFL 409

BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|743865961|ref|XP_011032326.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Populus euphratica])

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 76/96 (79.17%), Postives = 91/96 (94.79%), Query Frame = 1

Query: 10  EPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKL 69
           +P+V P+DE+GAL+YAGRWG++G+TLPGRVTFAPGN GFATFGAPRPMETQVV+DETWKL
Sbjct: 751 QPAVNPVDEYGALIYAGRWGIHGITLPGRVTFAPGNVGFATFGAPRPMETQVVSDETWKL 810

Query: 70  IDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL 106
           +D IWD+RVQE+R+E S E+EEDKE+PQLLMASHFL
Sbjct: 811 MDGIWDQRVQEIRSEASMEIEEDKERPQLLMASHFL 846

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FTSI4_ARATH2.1e-3868.04Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=A... [more]
Match NameE-valueIdentityDescription
A0A0A0KHR8_CUCSA6.9e-4998.96Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483400 PE=4 SV=1[more]
U5GB60_POPTR9.1e-4179.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06110g PE=4 SV=1[more]
U7DW38_POPTR1.6e-4080.00Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0231s002501g ... [more]
W9S040_9ROSA1.6e-4078.13ATP-dependent zinc metalloprotease FTSH OS=Morus notabilis GN=L484_020084 PE=4 S... [more]
A0A0V0IWT6_SOLCH4.5e-4075.73Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 ... [more]
Match NameE-valueIdentityDescription
AT5G64580.11.2e-3968.04 AAA-type ATPase family protein[more]
Match NameE-valueIdentityDescription
gi|449461843|ref|XP_004148651.1|1.0e-4898.96PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis sativus][more]
gi|700193155|gb|KGN48359.1|1.0e-4898.96hypothetical protein Csa_6G483400 [Cucumis sativus][more]
gi|659080912|ref|XP_008441046.1|7.9e-4692.71PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis melo][more]
gi|1009146833|ref|XP_015891084.1|2.6e-4183.33PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chlorop... [more]
gi|743865961|ref|XP_011032326.1|1.3e-4079.17PREDICTED: ATP-dependent zinc metalloprotease FtsH [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006508 proteolysis
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0005524 ATP binding
molecular_function GO:0008237 metallopeptidase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.100970.1Cucsa.100970.1mRNA
Cucsa.100970.2Cucsa.100970.2mRNA
Cucsa.100970.3Cucsa.100970.3mRNA
Cucsa.100970.4Cucsa.100970.4mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23076METALLOPROTEASE M41 FTSHcoord: 11..105
score: 2.3
NoneNo IPR availablePANTHERPTHR23076:SF49AAA-TYPE ATPASE FAMILY PROTEINcoord: 11..105
score: 2.3

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None