Cucsa.100970 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAAAGGCAAAACAAAACCAAAAGAAGTACAAAAAAaTACAAATACAAATAAAAGACTATAGGAGACATCCATCAACTCGCGCTGAGACAAACTTGAGTTTTGCATGAATACTCTCCTCAGATTGTGACGTTGGGCTGATGCAATTTTGACTTTTGTTATTCAATAATTTCACTTGTCAATGTTCAGATATTCAATGTCTTCAAACTATTTAAGGGTATTTTTGGTTGCACCTTATCAGCCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGGTACATGACAGTCTATAATGCTCAGATTTACTCCATCCATAATGTTGAATTACTGATAAATGGATCTTTCCTCTGTGAATTGAACCCTTGTGCAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGAATGTAATAATAAATTCCTTCATCTGTTAGCTCTCTCATTCATTGTTATTGATTCATGCACTCGCCTTTTATTTTTCTTGTTAACTGAAAACAGATATTGCATTGAATTATTGATAATGAGAAGTATAGACAATACAAGTATGTAGGACCAGGGAACCTCAAAAGACAGAAACTGAAACTAAACTTTGTTCTCGTAGGTTAAGAAGTCATGGCAAACTCATACATTACATTTTTTGACCAATCAAAAGCATAGAAAAAAAAAaCTGAACTCTATCCATTAACAACTTGTCATTCTTCATGTTTTCTCAAAACATATGCTTGTTTGTCTGAGTTTTATGACCTAATTAAGGGTGGTACTGCTAACATTAGTCCTTGACTTGCAACATTACGATAAATATCCCTACAAAATAGTGAGTGTAAATCTTCTGGAACTACCCGGAAAACATATAACTGAAATACTAACTGAGTCCACCATTGAAACATTGATTTAGCCCTTGTGAACCTTATCCTGTTATTGTTTTCTTGCATTTTCTGTTACACTTCATATCTGTTGTAACTCTCAAATTTTAAATGGAGGAAATAGCTTTCAATCATTTGATTGGGAGGAAGAATGAAAGAAAAaCAAAAAAAAATCTTATTTCTAACAAGAACTTTGCATTGACACCCCACCCAATAAAAAGATTCTTGCCCTGAAGAAATTGGTCTGCCTTTTACGTCTCTATCTCTCATTCCTCTTCATGTTTGTATCATAGGATCTATACAAGGGTTTCAAACTTTATTATCGCGTCATCTTTTTCATTCAGGGTTTATATTGCACACTCTTAACAACTCTTCCCTTACACTTTTCCTTTGATGCTTTCCACTTCCATGCGGGAAAGCAATTGTGATGGTTTTTGTTTACATAGTCTTGCAGATCATAGTGGGATCCTTAATATTTGCCGTAAATGCATGCCAGATTCCTGAAGGTCTGGAAATTTGCATCCTTGCTGATTATGTTTTACGCAGATGAGGAGGGCTTTGAAAAATGGCACATTTTAGATTTATACTTGCTGGAGACTTCGTGGCAATAAAGATGATACAATGATTTTGTTTTAGGCCGTGAGAAGTTAGTGAAGTTAAGTGGCTTCTGCAATTTTAACTGAATCTCTGGAATTGCTTTTCGGCCTGAGTTACCATCAACGAGAAGGGGTATTTGTTTGTATTAGTCCTTGTAAATTGTATCGTTTGTTCATCGGCTCTTCTGAATTTGTATTTCGTTCACAAAGTTTTGCACACACCACATCTTATTAATCAATGAGAAATGTCCTTTTCCTTTCATTGGAAGAACTGGAAAATTGGGCAAATAAATAATGTAAAAAGAATTCATTAGTGCA atgtccaaaggcaaaacaaaaccaaaagaaCCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGAATATCATAGTGGGATCCTTAATATTTGCCGTAAATGCATGCCAGATTCCTGAAGGTCTGGAAATTTGCATCCTTGCTGATTATGTTTTACGCAGATGAGGAGGGCTTTGAAAAATGGCACATTTTAGATTTATACTTGCTGGAGACTTCGTGGCAATAAAGATGATACAATGATTTTGTTTTAGGCCGTGAGAAGTTAGTGAAGTTAAGTGGCTTCTGCAATTTTAACTGAATCTCTGGAATTGCTTTTCGGCCTGAGTTACCATCAACGAGAAGGGGTATTTGTTTGTATTAGTCCTTGTAAATTGTATCGTTTGTTCATCGGCTCTTCTGAATTTGTATTTCGTTCACAAAGTTTTGCACACACCACATCTTATTAATCAATGAGAAATGTCCTTTTCCTTTCATTGGAAGAACTGGAAAATTGGGCAAATAAATAATGTAAAAAGAATTCATTAGTGCA ATGTCCAAAGGCAAAACAAAACCAAAAGAACCTTCTGTGCGTCCAATTGATGAACATGGAGCTCTGCTGTATGCTGGACGGTGGGGAGTTTATGGGGTTACACTGCCTGGAAGGGTTACATTTGCACCTGGAAATGCTGGATTTGCGACTTTTGGTGCCCCTCGACCTATGGAGACACAAGTTGTTAATGACGAAACATGGAAACTAATTGATGATATCTGGGACAAAAGGGTTCAGGAAATGAGAACTGAAGTTTCAGAAGAGGTTGAAGAAGACAAAGAGAAGCCACAACTTCTGATGGCCAGTCATTTCCTTTGA MSKGKTKPKEPSVRPIDEHGALLYAGRWGVYGVTLPGRVTFAPGNAGFATFGAPRPMETQVVNDETWKLIDDIWDKRVQEMRTEVSEEVEEDKEKPQLLMASHFL*
BLAST of Cucsa.100970 vs. Swiss-Prot
Match: FTSI4_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic OS=Arabidopsis thaliana GN=FTSHI4 PE=1 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 2.1e-38 Identity = 66/97 (68.04%), Postives = 91/97 (93.81%), Query Frame = 1
BLAST of Cucsa.100970 vs. TrEMBL
Match: A0A0A0KHR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483400 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 6.9e-49 Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of Cucsa.100970 vs. TrEMBL
Match: U5GB60_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06110g PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 9.1e-41 Identity = 76/96 (79.17%), Postives = 91/96 (94.79%), Query Frame = 1
BLAST of Cucsa.100970 vs. TrEMBL
Match: U7DW38_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0231s002501g PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40 Identity = 76/95 (80.00%), Postives = 90/95 (94.74%), Query Frame = 1
BLAST of Cucsa.100970 vs. TrEMBL
Match: W9S040_9ROSA (ATP-dependent zinc metalloprotease FTSH OS=Morus notabilis GN=L484_020084 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 1.6e-40 Identity = 75/96 (78.12%), Postives = 90/96 (93.75%), Query Frame = 1
BLAST of Cucsa.100970 vs. TrEMBL
Match: A0A0V0IWT6_SOLCH (Putative ATP-dependent zinc metalloprotease FtsH-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 4.5e-40 Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 1
BLAST of Cucsa.100970 vs. TAIR10
Match: AT5G64580.1 (AT5G64580.1 AAA-type ATPase family protein) HSP 1 Score: 159.5 bits (402), Expect = 1.2e-39 Identity = 66/97 (68.04%), Postives = 91/97 (93.81%), Query Frame = 1
BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|449461843|ref|XP_004148651.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis sativus]) HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48 Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|700193155|gb|KGN48359.1| (hypothetical protein Csa_6G483400 [Cucumis sativus]) HSP 1 Score: 201.1 bits (510), Expect = 1.0e-48 Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1
BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|659080912|ref|XP_008441046.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Cucumis melo]) HSP 1 Score: 191.4 bits (485), Expect = 7.9e-46 Identity = 89/96 (92.71%), Postives = 94/96 (97.92%), Query Frame = 1
BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|1009146833|ref|XP_015891084.1| (PREDICTED: probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 176.4 bits (446), Expect = 2.6e-41 Identity = 80/96 (83.33%), Postives = 89/96 (92.71%), Query Frame = 1
BLAST of Cucsa.100970 vs. NCBI nr
Match: gi|743865961|ref|XP_011032326.1| (PREDICTED: ATP-dependent zinc metalloprotease FtsH [Populus euphratica]) HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40 Identity = 76/96 (79.17%), Postives = 91/96 (94.79%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|