Cucsa.098140 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.098140
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAT3g47831/T23J7
Locationscaffold00923 : 248247 .. 250234 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAGCTCAGTTCTTCTCGGGAGCGGTGAGGTCGGCGACGATCAAAGCTTGGCTGAAGATTCCAACGGCCGTGAACGGAGAAACGTTGAAGTCTCGGTGAAATGGGAGCAGCGAGTAAAGCGGGCGATTGGGCGTTCAAGGCCTTTACTGCCGGTCTCGGTGTCGCCACCATTTATCTCACTGCTACTTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCGTAATATTTCTCTACTTCGCTTTATGCATTTTTTGATTGATGCCCCTGCGTATAGCTTATTGTTCATAATTCCATTCCTTCTTTTATCAAATGATGTTTAGTTTTTAGTTCTTAGCTAATTTATCGCGTTTTTAGTAATTCGGACTGAATTTCGACATTGGAATTTGGGGTTGAGCCAAAACTTCGTGATTGGTCCAAATCAATTGTTGGAATTAATAGATGATGTGGGGAACTTATTGAAGTGAGTATTGACGATTATGGTGTAAGTTGTTAGGTTCTGAATGTTTCGTTCTCATCATTTGTTGGAAGCAGCTAATCAGCATAATCTTAATACTTGAACGAGGGAAATGATCTTTGTTATATCAACATCGAATCCAAAGCTTAAGTGGGTGGGTTCCTGTAAATTTAGTTATATCTTTACTTTACACTCCCTATCCTTGTGAGTTTGAAAAATTGTAGGAGGTTCAACAAATAAAGTGGATGTTAGTTGGAGAGGAAATGATGTTGCACGAATCACCCTTTTAACTAAAAAGCTTAAACTGATGGATTACAATAAATTTAATTATATCTATCTTTTAACAATCCTCTTCTGTTTTAGGACTGAATTTGTGTAGTATGAATTGCAGAATTGAGTTTTTGTTTAGTGAGAAAGTTAATCTATGGTGGATTTTACTCTTTCTAGTGCGTTCCGTTGTATTGGTGCAAATCTAAGCAACCTTTTAATCATTTGAGTCTTTCTTATTTAGTTTCCAATTGGGAATCTCTTTGTTTACCTTTTTAGATGCATTGGGGTGTTTCCCCTTTCTTTTCTAAAAAAAaCAAAAAAGAACGTTAATATATGGTTGTAAGATGAATCAGTATTCAGTGTGATTCTAATAATTTCGTATGGGGAATTAGTAAACCGATACTTCGGAATAATAACTCTTAGTTTGCGGTAACTAAATCTACATGCTTGACAAGACTTTTCAAAGTTTAAGTCAACCTTTGACTTGCTCGAATTTCATGGTTACCTTAATCTGGACTTTGTGCTACTTATTTGAGGATTTCTGGTGATAAGATAAGAACTTATTGTCTTCCTCTATAGGAAAAGCTTAAGCAATGCCTCTTGACTATCTGGTTTCATGGACTTTCAGTTTTGCTATCATTCATCTGCCTTAACACATCATTCTCTAATAATGTTTGTTAGATACTTCATTGGTATTTAAGCACATTCAAGATTCAGAGGTCTGCAAAATATTTGCATCATGATACCTCTTGAAGGACTAAAAGGGTCGTGGCTTCTTTTtGTGCAGAAAATCAACAATGACAATACAAATGAAGAGGCTACATAGTTTGGATTTTCGAGACACGGAACATCTGCAAGTTCAACGTTTTtATTTTTttGTCTTCAAATTTTGTATGATCAGGTTCTAAATTGATTTCAATGCTTCACTTTATACCTTATCTTTCATGGGAAGAGCAGGAGACTTTCTTTTTGGATATCTAGCATAATTTGGTTATTGTATTAAGGGCATTATTCATACAAGGTCAGCAATTTACTGCAGATCATTTCAACTATTCTAATTGGAATGGCCTTATGTGCCTTCTGATGTAGTTTTTTCTTATTCCATACTTTTGTTGTTTATCATTTGATCTTTTTTtATCCATGTGTTGCATCTCATTGCAATGTATAAGATAGAAGATTAGTACCCTATTCGACATAATGGTTGTTGCTCTCTTAAGGAACACTTTTGAGTTATAGATTAAATCTGT

mRNA sequence

CACAGCTCAGTTCTTCTCGGGAGCGGTGAGGTCGGCGACGATCAAAGCTTGGCTGAAGATTCCAACGGCCGTGAACGGAGAAACGTTGAAGTCTCGGTGAAATGGGAGCAGCGAGTAAAGCGGGCGATTGGGCGTTCAAGGCCTTTACTGCCGGTCTCGGTGTCGCCACCATTTATCTCACTGCTACTTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCCTAATCAGCATAATCTTAATACTTGAACGAGGGAAATGATCTttgttatatcaacatcgaatccaaagcttaagtggAAAATCAACAATGACAATACAAATGAAGAGGCTACATAGTTTGGATTTTCGAGACACGGAACATCTGCAAGTTCAACGTTTTTATTTTTTTGTCTTCAAATTTTGTATGATCAGGTTCTAAATTGATTTCAATGCTTCACTTTATACCTTATCTTTCATGGGAAGAGCAGGAGACTTTCTTTTTGGATATCTAGCATAATTTGGTTATTGTATTAAGGGCATTATTCATACAAGGTCAGCAATTTACTGCAGATCATTTCAACTATTCTAATTGGAATGGCCTTATGTGCCTTCTGATGTAGTTTTTTCTTATTCCATACTTTTGTTGTTTATCATTTGATCTTTTTTTATCCATGTGTTGCATCTCATTGCAATGTATAAGATAGAAGATTAGTACCCTATTCGACATAATGGTTGTTGCTCTCTTAAGGAACACTTTTGAGTTATAGATTAAATCTGT

Coding sequence (CDS)

ATGGGAGCAGCGAGTAAAGCGGGCGATTGGGCGTTCAAGGCCTTTACTGCCGGTCTCGGTGTCGCCACCATTTATCTCACTGCTACTTTCTCAGTCAACGTCTACAGAGGATTGTCTTGGCACAAAGCTCAATCCCTAATCAGCATAATCTTAATACTTGAACGAGGGAAATGA

Protein sequence

MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLISIILILERGK*
Homology
[Close]
BLAST of Cucsa.098140 vs. TrEMBL
Match: A0A0A0LR55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045760 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.7e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLIS 49
          MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS I+
Sbjct: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSKIN 48

[Close]
BLAST of Cucsa.098140 vs. TrEMBL
Match: B9I340_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07600g PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.7e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLISIILIL 54
          MG ASKAGDW FKAFTAGLGV TIYL ATFSVNVYRGLSWH AQS+ +  +IL
Sbjct: 1  MGIASKAGDWTFKAFTAGLGVTTIYLAATFSVNVYRGLSWHNAQSVTNSSMIL 53

[Close]
BLAST of Cucsa.098140 vs. TrEMBL
Match: V4TMQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023252mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.1e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKAFTAGLGV TIYLTATFSVNVYRGL+WH AQ+
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVTTIYLTATFSVNVYRGLAWHNAQT 45

[Close]
BLAST of Cucsa.098140 vs. TrEMBL
Match: A0A061FTN8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011954 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLI 48
          MG AS+AGDWAFK FTAGLG+ATIYLTATFSVNVYRGL+WH AQS I
Sbjct: 1  MGWASRAGDWAFKGFTAGLGLATIYLTATFSVNVYRGLAWHNAQSKI 47

[Close]
BLAST of Cucsa.098140 vs. TrEMBL
Match: V4M0Q9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010893mg PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLISI 50
          MG  +KAGDW+FKAFTAGLG+ATIYLTATFS NVYRGLSWH AQS + I
Sbjct: 1  MGIVTKAGDWSFKAFTAGLGLATIYLTATFSANVYRGLSWHNAQSKLEI 49

[Close]
BLAST of Cucsa.098140 vs. NCBI nr
Match: gi|700209182|gb|KGN64278.1| (hypothetical protein Csa_1G045760 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLIS 49
          MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS I+
Sbjct: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSKIN 48

[Close]
BLAST of Cucsa.098140 vs. NCBI nr
Match: gi|224119196|ref|XP_002318011.1| (hypothetical protein POPTR_0012s07600g [Populus trichocarpa])

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-15
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLISIILIL 54
          MG ASKAGDW FKAFTAGLGV TIYL ATFSVNVYRGLSWH AQS+ +  +IL
Sbjct: 1  MGIASKAGDWTFKAFTAGLGVTTIYLAATFSVNVYRGLSWHNAQSVTNSSMIL 53

[Close]
BLAST of Cucsa.098140 vs. NCBI nr
Match: gi|567894464|ref|XP_006439720.1| (hypothetical protein CICLE_v10023252mg [Citrus clementina])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-15
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQS 46
          MG ASKAGDWAFKAFTAGLGV TIYLTATFSVNVYRGL+WH AQ+
Sbjct: 1  MGVASKAGDWAFKAFTAGLGVTTIYLTATFSVNVYRGLAWHNAQT 45

[Close]
BLAST of Cucsa.098140 vs. NCBI nr
Match: gi|590662907|ref|XP_007036060.1| (Uncharacterized protein TCM_011954 [Theobroma cacao])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLI 48
          MG AS+AGDWAFK FTAGLG+ATIYLTATFSVNVYRGL+WH AQS I
Sbjct: 1  MGWASRAGDWAFKGFTAGLGLATIYLTATFSVNVYRGLAWHNAQSKI 47

[Close]
BLAST of Cucsa.098140 vs. NCBI nr
Match: gi|567189209|ref|XP_006404325.1| (hypothetical protein EUTSA_v10010893mg [Eutrema salsugineum])

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 1 

Query: 1  MGAASKAGDWAFKAFTAGLGVATIYLTATFSVNVYRGLSWHKAQSLISI 50
          MG  +KAGDW+FKAFTAGLG+ATIYLTATFS NVYRGLSWH AQS + I
Sbjct: 1  MGIVTKAGDWSFKAFTAGLGLATIYLTATFSANVYRGLSWHNAQSKLEI 49

The following BLAST results are available for this feature:
BLAST of Cucsa.098140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR55_CUCSA1.7e-1795.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045760 PE=4 SV=1[more]
B9I340_POPTR2.7e-1579.25Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s07600g PE=4 SV=1[more]
V4TMQ1_9ROSI6.1e-1588.89Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023252mg PE=4 SV=1[more]
A0A061FTN8_THECC1.8e-1485.11Uncharacterized protein OS=Theobroma cacao GN=TCM_011954 PE=4 SV=1[more]
V4M0Q9_EUTSA1.8e-1479.59Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010893mg PE=4 SV=1[more]
BLAST of Cucsa.098140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209182|gb|KGN64278.1|2.5e-1795.83hypothetical protein Csa_1G045760 [Cucumis sativus][more]
gi|224119196|ref|XP_002318011.1|3.9e-1579.25hypothetical protein POPTR_0012s07600g [Populus trichocarpa][more]
gi|567894464|ref|XP_006439720.1|8.8e-1588.89hypothetical protein CICLE_v10023252mg [Citrus clementina][more]
gi|590662907|ref|XP_007036060.1|2.6e-1485.11Uncharacterized protein TCM_011954 [Theobroma cacao][more]
gi|567189209|ref|XP_006404325.1|2.6e-1479.59hypothetical protein EUTSA_v10010893mg [Eutrema salsugineum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.098140.1Cucsa.098140.1mRNA
Cucsa.098140.2Cucsa.098140.2mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38525FAMILY NOT NAMEDcoord: 2..57
score: 4.5
NoneNo IPR availablePANTHERPTHR38525:SF1SUBFAMILY NOT NAMEDcoord: 2..57
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.098140Cla008317Watermelon (97103) v1cgywmB127
Cucsa.098140Csa1G045760Cucumber (Chinese Long) v2cgycuB106
Cucsa.098140MELO3C002231Melon (DHL92) v3.5.1cgymeB116
Cucsa.098140ClCG01G014170Watermelon (Charleston Gray)cgywcgB125
Cucsa.098140Cp4.1LG20g02130Cucurbita pepo (Zucchini)cgycpeB0203
Cucsa.098140MELO3C002231.2Melon (DHL92) v3.6.1cgymedB113
Cucsa.098140CsaV3_1G008140Cucumber (Chinese Long) v3cgycucB109
Cucsa.098140Cla97C01G013170Watermelon (97103) v2cgywmbB118
Cucsa.098140Bhi08G001194Wax gourdcgywgoB140
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.098140Wax gourdcgywgoB138
Cucsa.098140Wax gourdcgywgoB141
Cucsa.098140Cucumber (Gy14) v1cgycgyB036
Cucsa.098140Cucumber (Gy14) v1cgycgyB038
Cucsa.098140Cucumber (Gy14) v1cgycgyB039
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0207
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0208
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0210
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0211
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0212
Cucsa.098140Cucurbita maxima (Rimu)cgycmaB0213
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0204
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0201
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0202
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0203
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0205
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0206
Cucsa.098140Cucurbita moschata (Rifu)cgycmoB0207
Cucsa.098140Wild cucumber (PI 183967)cgycpiB107
Cucsa.098140Wild cucumber (PI 183967)cgycpiB108
Cucsa.098140Wild cucumber (PI 183967)cgycpiB109
Cucsa.098140Wild cucumber (PI 183967)cgycpiB110
Cucsa.098140Cucumber (Chinese Long) v2cgycuB107
Cucsa.098140Cucumber (Chinese Long) v2cgycuB108
Cucsa.098140Cucumber (Chinese Long) v2cgycuB109
Cucsa.098140Melon (DHL92) v3.5.1cgymeB114
Cucsa.098140Melon (DHL92) v3.5.1cgymeB115
Cucsa.098140Melon (DHL92) v3.5.1cgymeB117
Cucsa.098140Melon (DHL92) v3.5.1cgymeB118
Cucsa.098140Watermelon (Charleston Gray)cgywcgB122
Cucsa.098140Watermelon (Charleston Gray)cgywcgB123
Cucsa.098140Watermelon (Charleston Gray)cgywcgB127
Cucsa.098140Watermelon (Charleston Gray)cgywcgB128
Cucsa.098140Watermelon (97103) v1cgywmB123
Cucsa.098140Watermelon (97103) v1cgywmB124
Cucsa.098140Watermelon (97103) v1cgywmB126
Cucsa.098140Watermelon (97103) v1cgywmB129
Cucsa.098140Cucurbita pepo (Zucchini)cgycpeB0201
Cucsa.098140Cucurbita pepo (Zucchini)cgycpeB0202
Cucsa.098140Cucurbita pepo (Zucchini)cgycpeB0204
Cucsa.098140Cucurbita pepo (Zucchini)cgycpeB0205
Cucsa.098140Bottle gourd (USVL1VR-Ls)cgylsiB118
Cucsa.098140Bottle gourd (USVL1VR-Ls)cgylsiB117
Cucsa.098140Bottle gourd (USVL1VR-Ls)cgylsiB119
Cucsa.098140Bottle gourd (USVL1VR-Ls)cgylsiB120
Cucsa.098140Melon (DHL92) v3.6.1cgymedB112
Cucsa.098140Melon (DHL92) v3.6.1cgymedB114
Cucsa.098140Silver-seed gourdcarcgyB0304
Cucsa.098140Silver-seed gourdcarcgyB0421
Cucsa.098140Silver-seed gourdcarcgyB0501
Cucsa.098140Silver-seed gourdcarcgyB0567
Cucsa.098140Silver-seed gourdcarcgyB0687
Cucsa.098140Silver-seed gourdcarcgyB1120
Cucsa.098140Cucumber (Chinese Long) v3cgycucB110
Cucsa.098140Cucumber (Chinese Long) v3cgycucB111
Cucsa.098140Cucumber (Chinese Long) v3cgycucB112
Cucsa.098140Cucumber (Chinese Long) v3cgycucB113
Cucsa.098140Watermelon (97103) v2cgywmbB119
Cucsa.098140Watermelon (97103) v2cgywmbB121
Cucsa.098140Watermelon (97103) v2cgywmbB122
Cucsa.098140Watermelon (97103) v2cgywmbB124