Cucsa.093860 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.093860
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionUnknown protein
Locationscaffold00919 : 134241 .. 134583 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGGATTATAAATACGAAATTACCGCTAACGATTGGAGATCAGAAGCGATTAATCGCCATTTTCTTTCTTCTTCTTCTTCTTCATCATCTCTCTCTCTCTCTCTGCTTAGGTGCAGTTTTTtCTGGTTCTTtGTTTTTtCTCCATCTCTCTCTCTCTTTAAGCCTGAATTGTATGGCCGCTAATTCGAGGAGCGTAGGAGCGATCGCCGGCTTGGGGAAACGAATCACTGACCAGATCTGGACCTGTGATCCACTTCGTAACTCTGTGATCTCTTCCTCTGCTCCGAAGTTCAGGTTCTTCTTCTTCTTTTTCTTTGATTTCTTCTTGTGCGAATGTTCATGA

mRNA sequence

GTGGATTATAAATACGAAATTACCGCTAACGATTGGAGATCAGAAGCGATTAATCGCCAttttctttcttcttcttcttcttcatcatctctctctctctctCTGCTTAGGTGCAGTTTTTTCTGGTTCTTTGTTTTTTCTCCATCTCTCTCTCTCTTTAAGCCTGAATTGTATGGCCGCTAATTCGAGGAGCGTAGGAGCGATCGCCGGCTTGGGGAAACGAATCACTGACCAGATCTGGACCTGTGATCCACTTCGTAACTCTGTGATCTCTTCCTCTGCTCCGAAGTTCAGGTTCTTCTTCTTCTTTTTCTTTGATTTCTTCTTGTGCGAATGTTCATGA

Coding sequence (CDS)

GTGGATTATAAATACGAAATTACCGCTAACGATTGGAGATCAGAAGCGATTAATCGCCATTTTCTTTCTTCTTCTTCTTCTTCATCATCTCTCTCTCTCTCTCTGCTTAGGTGCAGTTTTTtCTGGTTCTTtGTTTTTtCTCCATCTCTCTCTCTCTTTAAGCCTGAATTGTATGGCCGCTAATTCGAGGAGCGTAGGAGCGATCGCCGGCTTGGGGAAACGAATCACTGACCAGATCTGGACCTGTGATCCACTTCGTAACTCTGTGATCTCTTCCTCTGCTCCGAAGTTCAGGTTCTTCTTCTTCTTTTTCTTTGATTTCTTCTTGTGCGAATGTTCATGA

Protein sequence

WIINTKLPLTIGDQKRLIAIFFLLLLLHHLSLSLCLGAVFSGSLFFLHLSLSLSLNCMAANSRSVGAIAGLGKRITDQIWTCDPLRNSVISSSAPKFRFFFFFFFDFFLCECS*
Homology
[Close]
BLAST of Cucsa.093860 vs. NCBI nr
Match: gi|449458301|ref|XP_004146886.1| (PREDICTED: uncharacterized protein LOC101221715 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 1 

Query: 58 MAANSRSVGAIAGLGKRITDQIWTCDPLRNSVISSSAPKFR 99
          MAANSRSVGAIAGLGKRITDQIWTCDPLRNSVISSSAPKFR
Sbjct: 1  MAANSRSVGAIAGLGKRITDQIWTCDPLRNSVISSSAPKFR 41

[Close]
BLAST of Cucsa.093860 vs. NCBI nr
Match: gi|659107731|ref|XP_008453829.1| (PREDICTED: uncharacterized protein LOC103494437 isoform X1 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 58 MAANSRSVGAIAGLGKRITDQIWT-CDPLRNSVISSSAPKFR 99
          MAANSRS GAIAGLGKRITDQIWT  D LRNSVISSSAPKFR
Sbjct: 1  MAANSRSAGAIAGLGKRITDQIWTSSDSLRNSVISSSAPKFR 42

[Close]
BLAST of Cucsa.093860 vs. NCBI nr
Match: gi|659107733|ref|XP_008453830.1| (PREDICTED: uncharacterized protein LOC103494437 isoform X2 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 58 MAANSRSVGAIAGLGKRITDQIWT-CDPLRNSVISSSAPKFR 99
          MAANSRS GAIAGLGKRITDQIWT  D LRNSVISSSAPKFR
Sbjct: 1  MAANSRSAGAIAGLGKRITDQIWTSSDSLRNSVISSSAPKFR 42

The following BLAST results are available for this feature:
BLAST of Cucsa.093860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458301|ref|XP_004146886.1|1.1e-13100.00PREDICTED: uncharacterized protein LOC101221715 [Cucumis sativus][more]
gi|659107731|ref|XP_008453829.1|9.8e-1090.48PREDICTED: uncharacterized protein LOC103494437 isoform X1 [Cucumis melo][more]
gi|659107733|ref|XP_008453830.1|9.8e-1090.48PREDICTED: uncharacterized protein LOC103494437 isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.093860.1Cucsa.093860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.093860Cla010687Watermelon (97103) v1cgywmB117
Cucsa.093860MELO3C017620Melon (DHL92) v3.5.1cgymeB111
Cucsa.093860ClCG07G017270Watermelon (Charleston Gray)cgywcgB119
Cucsa.093860CmaCh16G002350Cucurbita maxima (Rimu)cgycmaB0196
Cucsa.093860CmoCh16G002530Cucurbita moschata (Rifu)cgycmoB0189
Cucsa.093860Lsi07G001430Bottle gourd (USVL1VR-Ls)cgylsiB115
Cucsa.093860Cp4.1LG14g05110Cucurbita pepo (Zucchini)cgycpeB0187
Cucsa.093860MELO3C017620.2Melon (DHL92) v3.6.1cgymedB109
Cucsa.093860CsaV3_4G004470Cucumber (Chinese Long) v3cgycucB102
Cucsa.093860Cla97C07G144280Watermelon (97103) v2cgywmbB112
Cucsa.093860Bhi01G001980Wax gourdcgywgoB126
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.093860Cucurbita maxima (Rimu)cgycmaB0203
Cucsa.093860Cucurbita moschata (Rifu)cgycmoB0195
Cucsa.093860Cucurbita moschata (Rifu)cgycmoB0197
Cucsa.093860Wild cucumber (PI 183967)cgycpiB103
Cucsa.093860Wild cucumber (PI 183967)cgycpiB104
Cucsa.093860Cucumber (Chinese Long) v2cgycuB102
Cucsa.093860Cucumber (Chinese Long) v2cgycuB103
Cucsa.093860Watermelon (Charleston Gray)cgywcgB115
Cucsa.093860Cucurbita pepo (Zucchini)cgycpeB0191
Cucsa.093860Cucurbita pepo (Zucchini)cgycpeB0199
Cucsa.093860Bottle gourd (USVL1VR-Ls)cgylsiB108
Cucsa.093860Silver-seed gourdcarcgyB0431
Cucsa.093860Silver-seed gourdcarcgyB0793
Cucsa.093860Silver-seed gourdcarcgyB0992
Cucsa.093860Cucumber (Chinese Long) v3cgycucB106
Cucsa.093860Watermelon (97103) v2cgywmbB107