Cucsa.088710 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.088710
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Fanconi anemia group M
Location	scaffold00888 : 987547 .. 988699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGTAAATGCCGTTCCCGTCCTTCCTCTTTCTTGTTAACTTACCTCATATGTCTGAGTCCTTTGACCTTTCTCTCCCATCCCATTTTCAGGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGGTCGTATTTGAATTCCGGACTAATTTTGATTTCCATTGTTTTGGGATTGTTATCTACGGACTCAATTTCTTCTATTCTCACCATGATCTTCTGTGAAACGTACTCCTCACTTACCCCAAGTAACTAGAACATGTAAAATACAAAAGATAACCTAAATTTGTCAACTGACTGTTTAGATCAACTACAAGCTTCTTCAGGCGGCATATGTTTTACTGCAAGAGTTGTGCTCCTATTTTGGAATGCAACGAATCTAATTTACTTCCTCAAACCATATAGTTTTTGGTAGCCTTTCTTTTGTTTCAACTCTAAGTTTGTTTAACATGCCAATATATTCCTTGGAATTTCTAGAGTTCACTGTTTGATATGTAGGTTATAAATTTCATGAAGTCAGAAGATAAGGAGATTTGTTTCGTATTATGATACAATATTTTGCATCATTGACTGCTTGATGGATTATTCCTATTCTTAGAAGTTAGGTGTTTATAGAAATTATAATCTGATGTGATGTCAGTTAAATCATGTAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG

mRNA sequence

ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTcgacgacaacgacgacgacgacGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG

Coding sequence (CDS)

ATGGCGTTTAGGACGTTTCCGATGGCAACAAGTAGTCGAGAATTCACTGTCGACGACAACGACGACGACGACGACTTCGACTGGGAAGCAGCCGTCAAAGAAATTGACGTGGCCAGCCTATCAGGAATTCACTCTGCTTCATCACATTCACTTCATCCTTCCCTAACGGAATCCTCCGACGCCGCTGCAGAAACTCCAGCTTCATTTCCACTTTCCGAGGAGAATGAAAAACGCGGAACTTCTCGCCAGTCTACACTTCACAGATTTATCGTGAATGCCAAGTTTCGAAAGAAAACAATGGACGTCGAAAAACCGGTTCAAGATCCCGGCCTTGTTGAAGACTCGGTTGGTCTTGTTGACATAGATGAGGAGGCAGCTAAGACCTGGATATATCCAGTTAATGTTCCTCTTCGGGATTATCAGCTGGCTATTACAAAGACAGCACTATTTTCAAATACATTGGTGGCTTTGCCTACAGGACTTGGAAAGACTCTCATTGCTGCAGTTGTTATGTATAACTACTTCAGATGGTTTCCTGAGG

Protein sequence

MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPEX

Homology

[Close]

BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_SCHPO (ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fml1 PE=1 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-18
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 120 DIDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP 179
           ++DE AA+ W+YP+NV  RDYQ  I + ALF N LVALPTGLGKT IAAVVM NY RWFP
Sbjct: 56  ELDESAAQQWVYPINVSFRDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNYLRWFP 115

Query: 180 E 181
           +
Sbjct: 116 K 116

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BLAST of Cucsa.088710 vs. Swiss-Prot
Match: FANCM_MOUSE (Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP 180
           A   WIYP N P+RDYQL I+++ALF NTLV LPTGLGKT IAAVVMYN++RWFP
Sbjct: 67  AGALWIYPTNCPVRDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFP 121

[Close]

BLAST of Cucsa.088710 vs. Swiss-Prot
Match: FANCM_HUMAN (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-17
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 125 AAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP 180
           A   WIYP N P+RDYQL I++ ALF NTLV LPTGLGKT IAAVVMYN++RWFP
Sbjct: 79  AGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFP 133

[Close]

BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_MAGO7 (ATP-dependent DNA helicase MPH1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MPH1 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.5e-17
Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 1


Query: 19  DNDDDDDFDWEAAVKEIDVASLSGIHSA--------SSHSLHPSL--------TESSDAA 78
           D D  DD   +  +  +D  + SG+HS         S+ + H S         +++ D +
Sbjct: 4   DYDSFDDDVADEVLMALDKPATSGLHSREQEQQRDISNATPHTSTDLELEDFGSDAFDYS 63

Query: 79  AETPASFPLSEENEKRGTSRQSTL-HRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDI 138
            E   + P+     +  T +Q+TL  R    A     T      V    L  +      +
Sbjct: 64  PERERAKPIQTARNQARTFQQTTLLGRIASQAPEPLGTQPRNSRVFRADLPPEVPTHHAL 123

Query: 139 DEEAAKTWIYPVNV-PLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRW 178
           D EA KTW+YP N+ P+RDYQ +I K  LF+NTLVALPTGLGKT IAA V+ N+FRW
Sbjct: 124 DPEALKTWVYPTNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFRW 180

[Close]

BLAST of Cucsa.088710 vs. Swiss-Prot
Match: MPH1_NEUCR (ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=mph1 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.8e-16
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 120 DIDEEAAKTWIYPVNV-PLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRW 178
           +ID E  KTW+YP+N+ P+RDYQ +I K  LF+NTLVALPTGLGKT IAA +M NY RW
Sbjct: 137 EIDIEEMKTWVYPMNLGPIRDYQFSIVKNGLFNNTLVALPTGLGKTFIAATIMLNYIRW 195

[Close]

BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A0A0LPX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395690 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-96
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

[Close]

BLAST of Cucsa.088710 vs. TrEMBL
Match: B9SLE2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0685890 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 96/179 (53.63%), Postives = 118/179 (65.92%), Query Frame = 1


Query: 10  TSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASF 69
           TS+    ++D++DDD+FDWEAAV+EIDVA                     +A  +T  S 
Sbjct: 2   TSTSPLRINDDEDDDEFDWEAAVREIDVAC-------------------ENANLQTEPSS 61

Query: 70  PLSEEN------EKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGL--VDI 129
             SE N      +K G  +QSTL RFI       KT+  + P  +P +++D  G+  ++I
Sbjct: 62  SRSENNLSNVILKKPGACKQSTLERFI------GKTVRPDPPPGNPTVIDDENGVSCIEI 121

Query: 130 DEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 181
           D EAAKTWIYPVNVP+RDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+
Sbjct: 122 DAEAAKTWIYPVNVPVRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPD 155

[Close]

BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A061FRW8_THECC (DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_036398 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.5e-38
Identity = 101/177 (57.06%), Postives = 118/177 (66.67%), Query Frame = 1


Query: 8   MATSSREFTVDDNDDDDD--FDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAET 67
           MA+S     +DDNDDD D  FDWEAAV+EID A  +   S+++ S H        A A  
Sbjct: 1   MASSIPLQIIDDNDDDGDQEFDWEAAVREIDKACENTKPSSNNSSSH-------FAPAHP 60

Query: 68  PASFPLSEENEKR--GTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDE 127
           P    +S++N     GT+RQSTL RFI     R  + D  + ++     ED V  V ID 
Sbjct: 61  PPLAQMSKKNTAAAAGTARQSTLDRFIGKVGPRPPS-DNHRTIEVEVEGEDRVASVGIDI 120

Query: 128 EAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 181
           EAAKTWIYPVNVPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVV+YNYFRWFP+
Sbjct: 121 EAAKTWIYPVNVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVIYNYFRWFPD 169

[Close]

BLAST of Cucsa.088710 vs. TrEMBL
Match: M4F023_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.1e-37
Identity = 91/170 (53.53%), Postives = 107/170 (62.94%), Query Frame = 1


Query: 14  EFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSE 73
           EF ++  +++D FDWEAAV+EID+A L  ++ +SS                  +S P + 
Sbjct: 4   EFPIELVEEEDGFDWEAAVREIDLACLKSVNPSSS------------------SSTPFTN 63

Query: 74  ENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGL---VEDSVGLVDIDEEAAKTWI 133
            N  +   RQSTL RFI  A  +    D    V DP       D+   V ID E AKTWI
Sbjct: 64  GNGTKPAKRQSTLDRFIARADNKPPPPD-PPVVSDPSFECGTNDNTPSVGIDPETAKTWI 123

Query: 134 YPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 181
           YPVNVPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+
Sbjct: 124 YPVNVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQ 154

[Close]

BLAST of Cucsa.088710 vs. TrEMBL
Match: A0A078K3I2_BRANA (BnaAnng41230D protein (Fragment) OS=Brassica napus GN=BnaAnng41230D PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.0e-37
Identity = 91/170 (53.53%), Postives = 105/170 (61.76%), Query Frame = 1


Query: 14  EFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSE 73
           EF ++  +++D FDWEAAV+EID+A L  ++ +SS S H                   + 
Sbjct: 4   EFPIELVEEEDGFDWEAAVREIDLACLKSVNPSSSSSTH------------------FTN 63

Query: 74  ENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGL---VEDSVGLVDIDEEAAKTWI 133
            N  +   RQSTL RFI  A   K        V DP       D+   V ID E AKTWI
Sbjct: 64  GNGTKPAKRQSTLDRFIARAD-HKPPPPYPPVVSDPSFECGTNDNTPSVGIDPETAKTWI 123

Query: 134 YPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 181
           YPVNVPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+
Sbjct: 124 YPVNVPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQ 154

[Close]

BLAST of Cucsa.088710 vs. TAIR10
Match: AT1G35530.2 (AT1G35530.2 DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-38
Identity = 91/166 (54.82%), Postives = 112/166 (67.47%), Query Frame = 1


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETP-ASFPLSEEN 76
           ++  ++D +FDWEAAVKEID+A L   +++SS S H            TP A+ P++   
Sbjct: 7   IETIEEDGEFDWEAAVKEIDLACLKTTNASSSSSSH-----------FTPLANPPITANL 66

Query: 77  EKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVE-DSVGLVDIDEEAAKTWIYPVN 136
            K    RQSTL +FI   + + +   V   V + G+ + D+  LV ID EAAKTWIYP  
Sbjct: 67  TKPPAKRQSTLDKFIGRTEHKPENHQV---VSECGVNDNDNSPLVGIDPEAAKTWIYPGF 126

Query: 137 VPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 181
           VPLRDYQ AITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFP+
Sbjct: 127 VPLRDYQFAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQ 158

[Close]

BLAST of Cucsa.088710 vs. TAIR10
Match: AT1G36020.1 (AT1G36020.1 BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT1G35530.1))

HSP 1 Score: 58.9 bits (141), Expect = 3.7e-09
Identity = 41/115 (35.65%), Postives = 58/115 (50.43%), Query Frame = 1


Query: 17  VDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSDAAAETPASFPLSEENE 76
           ++  ++D +FDWEAAVKEID+A L       + + HP                P++E   
Sbjct: 17  IETIEEDGEFDWEAAVKEIDLACL------KTTNAHP----------------PITENLT 76

Query: 77  KRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVDIDEEAAKTWIY 132
           K    RQSTL +FI   + + +   V    +  G   D+  LV+ID EAAKTWIY
Sbjct: 77  KPPAKRQSTLDKFIGRTEPKPENHQVVS--ECGGNDNDNSLLVEIDPEAAKTWIY 107

[Close]

BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|778672811|ref|XP_011649876.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

[Close]

BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|700207935|gb|KGN63054.1| (hypothetical protein Csa_2G395690 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

[Close]

BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|778672808|ref|XP_011649875.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.2e-96
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFRTFPMATS+REFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRTFPMATSNREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

[Close]

BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|659081087|ref|XP_008441145.1| (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFR  PMA S+REFTVDDNDDDDDFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           A AETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

[Close]

BLAST of Cucsa.088710 vs. NCBI nr
Match: gi|659081089|ref|XP_008441146.1| (PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 172/180 (95.56%), Postives = 175/180 (97.22%), Query Frame = 1


Query: 1   MAFRTFPMATSSREFTVDDNDDDDDFDWEAAVKEIDVASLSGIHSASSHSLHPSLTESSD 60
           MAFR  PMA S+REFTVDDNDDDDDFDWEAAVKEIDVA LSGIHSASSHSLHPSLTESSD
Sbjct: 1   MAFRMCPMAASNREFTVDDNDDDDDFDWEAAVKEIDVACLSGIHSASSHSLHPSLTESSD 60

Query: 61  AAAETPASFPLSEENEKRGTSRQSTLHRFIVNAKFRKKTMDVEKPVQDPGLVEDSVGLVD 120
           A AETPASFPLSEENEKRGTSRQSTLHRFI+NAKF+KKTMDVEKPVQDPGLVEDSVGLVD
Sbjct: 61  ATAETPASFPLSEENEKRGTSRQSTLHRFIMNAKFQKKTMDVEKPVQDPGLVEDSVGLVD 120

Query: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180
           IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE
Sbjct: 121 IDEEAAKTWIYPVNVPLRDYQLAITKTALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPE 180

The following BLAST results are available for this feature:

BLAST of Cucsa.088710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MPH1_SCHPO	4.1e-18	67.21	ATP-dependent DNA helicase fml1 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
FANCM_MOUSE	1.6e-17	72.73	Fanconi anemia group M protein homolog OS=Mus musculus GN=Fancm PE=1 SV=3	[more]
FANCM_HUMAN	2.0e-17	72.73	Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2	[more]
MPH1_MAGO7	3.5e-17	35.59	ATP-dependent DNA helicase MPH1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4...	[more]
MPH1_NEUCR	3.8e-16	66.10	ATP-dependent DNA helicase mph1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR2...	[more]

BLAST of Cucsa.088710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPX7_CUCSA	1.5e-96	99.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G395690 PE=4 SV=1	[more]
B9SLE2_RICCO	2.2e-39	53.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0685890 PE=4 SV=1	[more]
A0A061FRW8_THECC	2.5e-38	57.06	DEAD/DEAH box RNA helicase family protein, putative isoform 1 OS=Theobroma cacao...	[more]
M4F023_BRARP	6.1e-37	53.53	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078K3I2_BRANA	8.0e-37	53.53	BnaAnng41230D protein (Fragment) OS=Brassica napus GN=BnaAnng41230D PE=4 SV=1	[more]

BLAST of Cucsa.088710 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35530.2	2.9e-38	54.82	DEAD/DEAH box RNA helicase family protein	[more]
AT1G36020.1	3.7e-09	35.65	BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helica...	[more]

BLAST of Cucsa.088710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778672811\|ref\|XP_011649876.1\|	2.2e-96	99.44	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis sativus]	[more]
gi\|700207935\|gb\|KGN63054.1\|	2.2e-96	99.44	hypothetical protein Csa_2G395690 [Cucumis sativus]	[more]
gi\|778672808\|ref\|XP_011649875.1\|	2.2e-96	99.44	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis sativus]	[more]
gi\|659081087\|ref\|XP_008441145.1\|	2.5e-92	95.56	PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]	[more]
gi\|659081089\|ref\|XP_008441146.1\|	2.5e-92	95.56	PREDICTED: Fanconi anemia group M protein isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.088710.1	Cucsa.088710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 122..176 score: 1.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 119..179 score: 2.4
None	No IPR available	PANTHER	PTHR14025	FAMILY NOT NAMED	coord: 112..180 score: 1.7
None	No IPR available	PANTHER	PTHR14025:SF20	FANCONI ANEMIA GROUP M PROTEIN	coord: 112..180 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.088710	Cla011970	Watermelon (97103) v1	cgywmB103
Cucsa.088710	Csa2G395690	Cucumber (Chinese Long) v2	cgycuB090
Cucsa.088710	MELO3C008074	Melon (DHL92) v3.5.1	cgymeB100
Cucsa.088710	ClCG11G008690	Watermelon (Charleston Gray)	cgywcgB099
Cucsa.088710	CSPI02G24500	Wild cucumber (PI 183967)	cgycpiB093
Cucsa.088710	CmaCh15G000060	Cucurbita maxima (Rimu)	cgycmaB0168
Cucsa.088710	CmoCh15G000050	Cucurbita moschata (Rifu)	cgycmoB0163
Cucsa.088710	Lsi11G010060	Bottle gourd (USVL1VR-Ls)	cgylsiB097
Cucsa.088710	Cp4.1LG13g11690	Cucurbita pepo (Zucchini)	cgycpeB0162
Cucsa.088710	MELO3C008073.2	Melon (DHL92) v3.6.1	cgymedB099
Cucsa.088710	CsaV3_2G033030	Cucumber (Chinese Long) v3	cgycucB092
Cucsa.088710	Cla97C11G214970	Watermelon (97103) v2	cgywmbB097
Cucsa.088710	Bhi04G002085	Wax gourd	cgywgoB112

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.088710	Watermelon (97103) v2	cgywmbB095
Cucsa.088710	Watermelon (Charleston Gray)	cgywcgB097